Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:11:21 (4188628): wrapper (7.7.26015): starting
12:11:21 (4188628): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 12:11:21] Arguments: --nthreads 8
[2025-07-24 12:11:21] Threads: 8
[2025-07-24 12:11:21] Checking for CVMFS
[2025-07-24 12:11:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 12:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 12:11:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 12:11:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 12:11:23] 2.12.6.0 1094862 14283 445396 148707 0 940 24725677 32935936 29287 16776704 0 96957825 99.576 105262323 22893 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 12:11:23] CVMFS is ok
[2025-07-24 12:11:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 12:11:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 12:11:23] Further information can be found at the LHC@home message board.
[2025-07-24 12:11:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 12:11:23] Checking for apptainer binary...
[2025-07-24 12:11:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 12:11:23] Running /usr/bin/apptainer --version
[2025-07-24 12:11:23] apptainer version 1.4.1-1.el9
[2025-07-24 12:11:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 12:11:24] lc-12-33.aglt2.org
[2025-07-24 12:11:24] apptainer works
[2025-07-24 12:11:24] Set ATHENA_PROC_NUMBER=8
[2025-07-24 12:11:24] Set ATHENA_CORE_NUMBER=8
[2025-07-24 12:11:24] Starting ATLAS job with PandaID=6744716810
[2025-07-24 12:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:40:12 (4188628): BOINC client no longer exists - exiting
13:40:12 (4188628): timer handler: client dead, exiting
13:49:17 (692451): wrapper (7.7.26015): starting
13:49:17 (692451): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 13:49:17] Arguments: --nthreads 8
[2025-07-24 13:49:17] Threads: 8
[2025-07-24 13:49:17] This job has been restarted, cleaning up previous attempt
[2025-07-24 13:49:17] Checking for CVMFS
[2025-07-24 13:49:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 13:49:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 13:49:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 13:49:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 13:49:18] 2.12.6.0 1094862 14381 426756 148709 2 392 29081543 32935936 27550 16776704 0 97340045 99.573 105989159 22847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 13:49:18] CVMFS is ok
[2025-07-24 13:49:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 13:49:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 13:49:18] Further information can be found at the LHC@home message board.
[2025-07-24 13:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 13:49:18] Checking for apptainer binary...
[2025-07-24 13:49:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 13:49:18] Running /usr/bin/apptainer --version
[2025-07-24 13:49:18] apptainer version 1.4.1-1.el9
[2025-07-24 13:49:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 13:49:19] lc-12-33.aglt2.org
[2025-07-24 13:49:19] apptainer works
[2025-07-24 13:49:19] Set ATHENA_PROC_NUMBER=8
[2025-07-24 13:49:19] Set ATHENA_CORE_NUMBER=8
[2025-07-24 13:49:19] Starting ATLAS job with PandaID=6744716810
[2025-07-24 13:49:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 18:14:07]  *** The last 200 lines of the pilot log: ***
[2025-07-24 18:14:07] 2025-07-24 22:13:33,524 | INFO     | -- intersect: -30417939309.95255
[2025-07-24 18:14:07] 2025-07-24 22:13:33,524 | INFO     | intersect: -30417939309.95255
[2025-07-24 18:14:07] 2025-07-24 22:13:33,525 | INFO     | chi2: 2.0076843628223804
[2025-07-24 18:14:07] 2025-07-24 22:13:33,525 | INFO     | sum of square deviations: 5021534186.355712
[2025-07-24 18:14:07] 2025-07-24 22:13:33,527 | INFO     | sum of deviations: 94586372564.88533
[2025-07-24 18:14:07] 2025-07-24 22:13:33,527 | INFO     | mean x: 1753387142.1620553
[2025-07-24 18:14:07] 2025-07-24 22:13:33,527 | INFO     | mean y: 2119382.7588932808
[2025-07-24 18:14:07] 2025-07-24 22:13:33,527 | INFO     | -- intersect: -33024944324.11589
[2025-07-24 18:14:07] 2025-07-24 22:13:33,527 | INFO     | intersect: -33024944324.11589
[2025-07-24 18:14:07] 2025-07-24 22:13:33,528 | INFO     | chi2: 1.9735740509283644
[2025-07-24 18:14:07] 2025-07-24 22:13:33,528 | INFO     | current chi2=1.9735740509283644 (change=1.6989877754521199 %)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,528 | INFO     | right removable region: 252
[2025-07-24 18:14:07] 2025-07-24 22:13:33,528 | INFO     | sum of square deviations: 5021509176.355712
[2025-07-24 18:14:07] 2025-07-24 22:13:33,531 | INFO     | sum of deviations: 48312959953.679886
[2025-07-24 18:14:07] 2025-07-24 22:13:33,531 | INFO     | mean x: 1753387447.1620553
[2025-07-24 18:14:07] 2025-07-24 22:13:33,531 | INFO     | mean y: 2140308.1541501977
[2025-07-24 18:14:07] 2025-07-24 22:13:33,531 | INFO     | -- intersect: -16867556538.542326
[2025-07-24 18:14:07] 2025-07-24 22:13:33,531 | INFO     | intersect: -16867556538.542326
[2025-07-24 18:14:07] 2025-07-24 22:13:33,531 | INFO     | chi2: 0.28804189705914324
[2025-07-24 18:14:07] 2025-07-24 22:13:33,532 | INFO     | current chi2=0.28804189705914324 (change=85.65302881304424 %)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,532 | INFO     | sum of square deviations: 4729636619.548383
[2025-07-24 18:14:07] 2025-07-24 22:13:33,534 | INFO     | sum of deviations: 34263540430.193558
[2025-07-24 18:14:07] 2025-07-24 22:13:33,535 | INFO     | mean x: 1753387599.6612904
[2025-07-24 18:14:07] 2025-07-24 22:13:33,535 | INFO     | mean y: 2147642.39516129
[2025-07-24 18:14:07] 2025-07-24 22:13:33,535 | INFO     | -- intersect: -12700153135.31897
[2025-07-24 18:14:07] 2025-07-24 22:13:33,535 | INFO     | intersect: -12700153135.31897
[2025-07-24 18:14:07] 2025-07-24 22:13:33,535 | INFO     | chi2: 0.17793359364872358
[2025-07-24 18:14:07] 2025-07-24 22:13:33,536 | INFO     | current chi2=0.17793359364872358 (change=38.22648876243559 %)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,536 | INFO     | sum of square deviations: 4449344788.666669
[2025-07-24 18:14:07] 2025-07-24 22:13:33,538 | INFO     | sum of deviations: 27726843970.592594
[2025-07-24 18:14:07] 2025-07-24 22:13:33,538 | INFO     | mean x: 1753387752.148148
[2025-07-24 18:14:07] 2025-07-24 22:13:33,538 | INFO     | mean y: 2151172.8724279837
[2025-07-24 18:14:07] 2025-07-24 22:13:33,538 | INFO     | -- intersect: -10924380919.581675
[2025-07-24 18:14:07] 2025-07-24 22:13:33,538 | INFO     | intersect: -10924380919.581675
[2025-07-24 18:14:07] 2025-07-24 22:13:33,538 | INFO     | chi2: 0.13283132899058178
[2025-07-24 18:14:07] 2025-07-24 22:13:33,539 | INFO     | current chi2=0.13283132899058178 (change=25.347807422572867 %)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,539 | INFO     | sum of square deviations: 4180311272.352934
[2025-07-24 18:14:07] 2025-07-24 22:13:33,540 | INFO     | sum of deviations: 25356339132.470577
[2025-07-24 18:14:07] 2025-07-24 22:13:33,541 | INFO     | mean x: 1753387904.6470587
[2025-07-24 18:14:07] 2025-07-24 22:13:33,541 | INFO     | mean y: 2152518.029411765
[2025-07-24 18:14:07] 2025-07-24 22:13:33,541 | INFO     | -- intersect: -10633299113.298103
[2025-07-24 18:14:07] 2025-07-24 22:13:33,541 | INFO     | intersect: -10633299113.298103
[2025-07-24 18:14:07] 2025-07-24 22:13:33,541 | INFO     | chi2: 0.13200845993861576
[2025-07-24 18:14:07] 2025-07-24 22:13:33,541 | INFO     | current chi2=0.13200845993861576 (change=0.6194841670404149 %)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,542 | INFO     | left removable region: 40
[2025-07-24 18:14:07] 2025-07-24 22:13:33,542 | INFO     | sum of square deviations: 2954500197.5471635
[2025-07-24 18:14:07] 2025-07-24 22:13:33,543 | INFO     | sum of deviations: 21782748630.490566
[2025-07-24 18:14:07] 2025-07-24 22:13:33,543 | INFO     | mean x: 1753388331.6603773
[2025-07-24 18:14:07] 2025-07-24 22:13:33,543 | INFO     | mean y: 2160170.117924528
[2025-07-24 18:14:07] 2025-07-24 22:13:33,543 | INFO     | -- intersect: -12925108310.656488
[2025-07-24 18:14:07] 2025-07-24 22:13:33,544 | INFO     | intersect: -12925108310.656488
[2025-07-24 18:14:07] 2025-07-24 22:13:33,544 | INFO     | chi2: 0.09301997625191102
[2025-07-24 18:14:07] 2025-07-24 22:13:33,544 | INFO     | -- intersect: -12925108310.656488
[2025-07-24 18:14:07] 2025-07-24 22:13:33,544 | INFO     | current memory leak: 7.37 B/s (using 212 data points, chi2=0.09)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | could have reported an average CPU frequency of 2535 MHz (12 samples)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | ..............................
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . Timing measurements:
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . get job = 0 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . initial setup = 2 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . payload setup = 23 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . stage-in = 0 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . payload execution = 15753 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,545 | INFO     | . stage-out = 3 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,546 | INFO     | . log creation = 0 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,546 | INFO     | ..............................
[2025-07-24 18:14:07] 2025-07-24 22:13:33,644 | INFO     | 
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | job summary report
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | --------------------------------------------------
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | PanDA job id: 6744716810
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | task id: 45743349
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | errors: (none)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | pilot state: finished 
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | transexitcode: 0
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | exeerrorcode: 0
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | exeerrordiag: 
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | exitcode: 0
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | exitmsg: OK
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | cpuconsumptiontime: 52366 s
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | nevents: 400
[2025-07-24 18:14:07] 2025-07-24 22:13:33,645 | INFO     | neventsw: 0
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | pid: 726263
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | pgrp: 726263
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | corecount: 8
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | event service: False
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | sizes: {0: 2397229, 1: 2397313, 2: 2397512, 12: 2397774, 13: 2397802, 15780: 2429001, 15781: 2429128, 15784: 2438182, 15786: 2438238, 15800: 2438432}
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | --------------------------------------------------
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | 
[2025-07-24 18:14:07] 2025-07-24 22:13:33,646 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-24 18:14:07] 2025-07-24 22:13:33,672 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,673 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,673 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,673 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | job 6744716810 has completed (purged errors)
[2025-07-24 18:14:07] 2025-07-24 22:13:33,675 | INFO     | overall cleanup function is called
[2025-07-24 18:14:07] 2025-07-24 22:13:34,684 | INFO     | --- collectZombieJob: --- 10, [726263]
[2025-07-24 18:14:07] 2025-07-24 22:13:34,687 | INFO     | zombie collector waiting for pid 726263
[2025-07-24 18:14:07] 2025-07-24 22:13:34,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 18:14:07] 2025-07-24 22:13:34,688 | INFO     | collected zombie processes
[2025-07-24 18:14:07] 2025-07-24 22:13:34,688 | INFO     | will attempt to kill all subprocesses of pid=726263
[2025-07-24 18:14:07] 2025-07-24 22:13:35,483 | INFO     | process IDs to be killed: [726263] (in reverse order)
[2025-07-24 18:14:07] 2025-07-24 22:13:35,700 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 18:14:07] 2025-07-24 22:13:35,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 18:14:07] 2025-07-24 22:13:35,732 | INFO     | did not find any defunct processes belonging to 726263
[2025-07-24 18:14:07] 2025-07-24 22:13:35,758 | INFO     | did not find any defunct processes belonging to 726263
[2025-07-24 18:14:07] 2025-07-24 22:13:35,758 | INFO     | ready for new job
[2025-07-24 18:14:07] 2025-07-24 22:13:35,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 18:14:07] 2025-07-24 22:13:35,760 | INFO     | ***************************************
[2025-07-24 18:14:07] 2025-07-24 22:13:35,761 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 18:14:07] 2025-07-24 22:13:35,762 | INFO     | ***************************************
[2025-07-24 18:14:07] 2025-07-24 22:13:35,762 | INFO     | 
[2025-07-24 18:14:07] 2025-07-24 22:13:35,783 | INFO     | architecture information:
[2025-07-24 18:14:07] 2025-07-24 22:13:35,783 | INFO     | executing command: cat /etc/os-release
[2025-07-24 18:14:07] 2025-07-24 22:13:35,803 | INFO     | cat /etc/os-release:
[2025-07-24 18:14:07] NAME="CentOS Linux"
[2025-07-24 18:14:07] VERSION="7 (Core)"
[2025-07-24 18:14:07] ID="centos"
[2025-07-24 18:14:07] ID_LIKE="rhel fedora"
[2025-07-24 18:14:07] VERSION_ID="7"
[2025-07-24 18:14:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 18:14:07] ANSI_COLOR="0;31"
[2025-07-24 18:14:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 18:14:07] HOME_URL="https://www.centos.org/"
[2025-07-24 18:14:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 18:14:07] 
[2025-07-24 18:14:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 18:14:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 18:14:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 18:14:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 18:14:07] 
[2025-07-24 18:14:07] 2025-07-24 22:13:35,805 | INFO     | ***************************************
[2025-07-24 18:14:07] 2025-07-24 22:13:36,307 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-24 18:14:07] 2025-07-24 22:13:36,357 | INFO     | sufficient remaining disk space (75498520576 B)
[2025-07-24 18:14:07] 2025-07-24 22:13:36,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 18:14:07] 2025-07-24 22:13:36,357 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 18:14:07] 2025-07-24 22:13:36,358 | INFO     | update_server=False
[2025-07-24 18:14:07] 2025-07-24 22:13:36,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 18:14:07] 2025-07-24 22:13:36,450 | INFO     | all job control threads have been joined
[2025-07-24 18:14:07] 2025-07-24 22:13:36,989 | INFO     | all data control threads have been joined
[2025-07-24 18:14:07] 2025-07-24 22:13:37,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 18:14:07] 2025-07-24 22:13:37,351 | INFO     | aborting loop
[2025-07-24 18:14:07] 2025-07-24 22:13:37,356 | INFO     | all payload control threads have been joined
[2025-07-24 18:14:07] 2025-07-24 22:13:37,371 | INFO     | [job] retrieve thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:37,455 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:37,457 | INFO     | [job] control thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:37,667 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 18:14:07] 2025-07-24 22:13:37,722 | INFO     | [payload] validate_post thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:37,783 | INFO     | [payload] failed_post thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:37,858 | INFO     | [job] validate thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:37,996 | INFO     | [data] control thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,356 | INFO     | [job] job monitor thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,357 | INFO     | [data] copytool_in thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,358 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,361 | INFO     | [payload] control thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,562 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,657 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:38,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 18:14:07] 2025-07-24 22:13:38,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 18:14:07] 2025-07-24 22:13:39,667 | INFO     | [job] queue monitor thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:39,683 | INFO     | [data] copytool_out thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:42,731 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 18:14:07] 2025-07-24 22:13:43,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284327130944)>', '<ExcThread(monitor, started 140283656251136)>']
[2025-07-24 18:14:07] 2025-07-24 22:13:48,748 | INFO     | all workflow threads have been joined
[2025-07-24 18:14:07] 2025-07-24 22:13:48,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 18:14:07] 2025-07-24 22:13:48,749 | INFO     | traces error code: 0
[2025-07-24 18:14:07] 2025-07-24 22:13:48,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 18:14:07] 2025-07-24 22:14:06,748 | INFO     | PID=704265 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-24 18:14:07] 2025-07-24 22:14:06,748 | INFO     | .. there are 58 such processes running
[2025-07-24 18:14:07] 2025-07-24 22:14:06,749 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 18:14:07] 2025-07-24 22:14:06,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 18:14:07] 2025-07-24 22:14:06,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 18:14:07] 2025-07-24 22:14:06,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 18:14:07] 2025-07-24 22:14:06,749 | CRITICAL | thread 'MainThread' is not alive
[2025-07-24 18:14:07] 2025-07-24 22:14:06,749 | INFO     | [monitor] control thread has ended
[2025-07-24 18:14:07] 2025-07-24 22:14:07,082 [wrapper] ==== pilot stdout END ====
[2025-07-24 18:14:07] 2025-07-24 22:14:07,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 18:14:07] 2025-07-24 22:14:07,106 [wrapper] pilotpid: 704265
[2025-07-24 18:14:07] 2025-07-24 22:14:07,108 [wrapper] Pilot exit status: 0
[2025-07-24 18:14:07] 2025-07-24 22:14:07,122 [wrapper] pandaids: 6744716810 6744716810
[2025-07-24 18:14:07] 2025-07-24 22:14:07,254 [wrapper] cleanup supervisor_pilot 3508807 704266
[2025-07-24 18:14:07] 2025-07-24 22:14:07,275 [wrapper] Test setup, not cleaning
[2025-07-24 18:14:07] 2025-07-24 22:14:07,286 [wrapper] apfmon messages muted
[2025-07-24 18:14:07] 2025-07-24 22:14:07,290 [wrapper] ==== wrapper stdout END ====
[2025-07-24 18:14:07] 2025-07-24 22:14:07,300 [wrapper] ==== wrapper stderr END ====
[2025-07-24 18:14:07]  *** Error codes and diagnostics ***
[2025-07-24 18:14:07]     "exeErrorCode": 0,
[2025-07-24 18:14:07]     "exeErrorDiag": "",
[2025-07-24 18:14:07]     "pilotErrorCode": 0,
[2025-07-24 18:14:07]     "pilotErrorDiag": "",
[2025-07-24 18:14:07]  *** Listing of results directory ***
[2025-07-24 18:14:07] total 663580
[2025-07-24 18:14:07] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 09:27 pilot3.tar.gz
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 10:20 queuedata.json
[2025-07-24 18:14:07] -rwx------. 1 boincer umatlas     36292 Jul 24 10:21 runpilot2-wrapper.sh
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas       100 Jul 24 12:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 18:14:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 12:11 run_atlas
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas       105 Jul 24 12:11 job.xml
[2025-07-24 18:14:07] -rw-r--r--. 3 boincer umatlas 231045816 Jul 24 12:11 EVNT.45743347._000002.pool.root.1
[2025-07-24 18:14:07] -rw-r--r--. 3 boincer umatlas 231045816 Jul 24 12:11 ATLAS.root_0
[2025-07-24 18:14:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 12:11 start_atlas.sh
[2025-07-24 18:14:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 12:11 shared
[2025-07-24 18:14:07] -rw-r--r--. 2 boincer umatlas    542870 Jul 24 12:11 input.tar.gz
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas         0 Jul 24 12:11 boinc_lockfile
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas      2554 Jul 24 13:49 pandaJob.out
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas    979677 Jul 24 13:49 agis_schedconf.cvmfs.json
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas 210278223 Jul 24 18:12 HITS.45743349._000027.pool.root.1
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas       531 Jul 24 18:12 boinc_task_state.xml
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas      6878 Jul 24 18:12 init_data.xml
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas        96 Jul 24 18:13 pilot_heartbeat.json
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas      1046 Jul 24 18:13 memory_monitor_summary.json
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas   1593052 Jul 24 18:13 agis_ddmendpoints.agis.ALL.json
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas    388591 Jul 24 18:13 log.45743349._000027.job.log.tgz.1
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas      7821 Jul 24 18:13 heartbeat.json
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 24 18:13 boinc_mmap_file
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas        28 Jul 24 18:13 wrapper_checkpoint.txt
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas       892 Jul 24 18:14 pilotlog.txt
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas   1241659 Jul 24 18:14 log.45743349._000027.job.log.1
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas       357 Jul 24 18:14 output.list
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas       620 Jul 24 18:14 runtime_log
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas   1648640 Jul 24 18:14 result.tar.gz
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas       781 Jul 24 18:14 zsRMDm1zBz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFGMLDmKWnaFm.diag
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas      8746 Jul 24 18:14 runtime_log.err
[2025-07-24 18:14:07] -rw-r--r--. 1 boincer umatlas     23305 Jul 24 18:14 stderr.txt
[2025-07-24 18:14:07] HITS file was successfully produced:
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas 210278223 Jul 24 18:12 shared/HITS.pool.root.1
[2025-07-24 18:14:07]  *** Contents of shared directory: ***
[2025-07-24 18:14:07] total 433148
[2025-07-24 18:14:07] -rw-r--r--. 3 boincer umatlas 231045816 Jul 24 12:11 ATLAS.root_0
[2025-07-24 18:14:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 12:11 start_atlas.sh
[2025-07-24 18:14:07] -rw-r--r--. 2 boincer umatlas    542870 Jul 24 12:11 input.tar.gz
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas 210278223 Jul 24 18:12 HITS.pool.root.1
[2025-07-24 18:14:07] -rw-------. 1 boincer umatlas   1648640 Jul 24 18:14 result.tar.gz
18:14:08 (692451): run_atlas exited; CPU time 53325.395936
18:14:08 (692451): called boinc_finish(0)

</stderr_txt>
]]>

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