Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:21:22 (2559980): wrapper (7.7.26015): starting
11:21:22 (2559980): wrapper: running run_atlas (--nthreads 10)
[2025-07-24 11:21:22] Arguments: --nthreads 10
[2025-07-24 11:21:22] Threads: 10
[2025-07-24 11:21:22] Checking for CVMFS
[2025-07-24 11:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 11:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 11:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 11:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 11:21:23] 2.13.0.0 2209255 14235 264392 148707 2 20 27826947 32935936 7286 16776704 0 47313553 99.511 65201830 30403 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 11:21:23] CVMFS is ok
[2025-07-24 11:21:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 11:21:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 11:21:23] Further information can be found at the LHC@home message board.
[2025-07-24 11:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 11:21:23] Checking for apptainer binary...
[2025-07-24 11:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 11:21:23] Running /usr/bin/apptainer --version
[2025-07-24 11:21:23] apptainer version 1.4.1-1.el9
[2025-07-24 11:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 11:21:23] c-5-6.aglt2.org
[2025-07-24 11:21:23] apptainer works
[2025-07-24 11:21:23] Set ATHENA_PROC_NUMBER=10
[2025-07-24 11:21:23] Set ATHENA_CORE_NUMBER=10
[2025-07-24 11:21:23] Starting ATLAS job with PandaID=6744773514
[2025-07-24 11:21:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 17:43:21]  *** The last 200 lines of the pilot log: ***
[2025-07-24 17:43:21] 2025-07-24 21:42:46,561 | INFO     | PID=2566017 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-24 17:43:21] 2025-07-24 21:42:46,561 | INFO     | .. there are 12 such processes running
[2025-07-24 17:43:21] 2025-07-24 21:42:47,420 | INFO     | monitor loop #1288: job 0:6744773514 is in state 'finished'
[2025-07-24 17:43:21] 2025-07-24 21:42:47,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 17:43:21] 2025-07-24 21:42:47,969 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 17:43:21] 2025-07-24 21:42:47,976 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2659.853175
[2025-07-24 17:43:21] 2025-07-24 21:42:47,983 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744773514/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 17:43:21] 2025-07-24 21:42:47,984 | INFO     | extracted standard info from prmon json
[2025-07-24 17:43:21] 2025-07-24 21:42:47,984 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 17:43:21] 2025-07-24 21:42:47,984 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 17:43:21] 2025-07-24 21:42:47,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 17:43:21] 2025-07-24 21:42:47,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 17:43:21] 2025-07-24 21:42:47,993 | INFO     | fitting pss+swap vs Time
[2025-07-24 17:43:21] 2025-07-24 21:42:47,994 | INFO     | sum of square deviations: 16350760700.400085
[2025-07-24 17:43:21] 2025-07-24 21:42:47,998 | INFO     | sum of deviations: -98259550478.88002
[2025-07-24 17:43:21] 2025-07-24 21:42:47,999 | INFO     | mean x: 1753381931.04
[2025-07-24 17:43:21] 2025-07-24 21:42:47,999 | INFO     | mean y: 2289159.458666667
[2025-07-24 17:43:21] 2025-07-24 21:42:47,999 | INFO     | -- intersect: 10539200775.905071
[2025-07-24 17:43:21] 2025-07-24 21:42:47,999 | INFO     | intersect: 10539200775.905071
[2025-07-24 17:43:21] 2025-07-24 21:42:48,000 | INFO     | chi2: 2.6925708848837058
[2025-07-24 17:43:21] 2025-07-24 21:42:48,000 | INFO     | sum of square deviations: 15705481497.418995
[2025-07-24 17:43:21] 2025-07-24 21:42:48,005 | INFO     | sum of deviations: -77007960023.98654
[2025-07-24 17:43:21] 2025-07-24 21:42:48,005 | INFO     | mean x: 1753381778.554054
[2025-07-24 17:43:21] 2025-07-24 21:42:48,005 | INFO     | mean y: 2294126.224324324
[2025-07-24 17:43:21] 2025-07-24 21:42:48,006 | INFO     | -- intersect: 8599569792.803959
[2025-07-24 17:43:21] 2025-07-24 21:42:48,006 | INFO     | intersect: 8599569792.803959
[2025-07-24 17:43:21] 2025-07-24 21:42:48,006 | INFO     | chi2: 2.0242954461574225
[2025-07-24 17:43:21] 2025-07-24 21:42:48,006 | INFO     | current chi2=2.0242954461574225 (change=24.819232892921463 %)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,007 | INFO     | right removable region: 369
[2025-07-24 17:43:21] 2025-07-24 21:42:48,007 | INFO     | sum of square deviations: 15705243597.41898
[2025-07-24 17:43:21] 2025-07-24 21:42:48,012 | INFO     | sum of deviations: -146937997144.41888
[2025-07-24 17:43:21] 2025-07-24 21:42:48,012 | INFO     | mean x: 1753382083.554054
[2025-07-24 17:43:21] 2025-07-24 21:42:48,012 | INFO     | mean y: 2300583.6459459458
[2025-07-24 17:43:21] 2025-07-24 21:42:48,012 | INFO     | -- intersect: 16406914112.128975
[2025-07-24 17:43:21] 2025-07-24 21:42:48,012 | INFO     | intersect: 16406914112.128975
[2025-07-24 17:43:21] 2025-07-24 21:42:48,013 | INFO     | chi2: 1.3084825437049745
[2025-07-24 17:43:21] 2025-07-24 21:42:48,013 | INFO     | current chi2=1.3084825437049745 (change=51.403970419093014 %)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,014 | INFO     | sum of square deviations: 15077094109.112335
[2025-07-24 17:43:21] 2025-07-24 21:42:48,018 | INFO     | sum of deviations: -137206888579.24113
[2025-07-24 17:43:21] 2025-07-24 21:42:48,018 | INFO     | mean x: 1753382236.049315
[2025-07-24 17:43:21] 2025-07-24 21:42:48,019 | INFO     | mean y: 2298222.2356164386
[2025-07-24 17:43:21] 2025-07-24 21:42:48,019 | INFO     | -- intersect: 15958696673.913317
[2025-07-24 17:43:21] 2025-07-24 21:42:48,019 | INFO     | intersect: 15958696673.913317
[2025-07-24 17:43:21] 2025-07-24 21:42:48,019 | INFO     | chi2: 1.3027447779586745
[2025-07-24 17:43:21] 2025-07-24 21:42:48,020 | INFO     | current chi2=1.3027447779586745 (change=0.43850533382382895 %)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,020 | INFO     | left removable region: 20
[2025-07-24 17:43:21] 2025-07-24 21:42:48,020 | INFO     | sum of square deviations: 13180177193.438364
[2025-07-24 17:43:21] 2025-07-24 21:42:48,024 | INFO     | sum of deviations: -93722320753.88542
[2025-07-24 17:43:21] 2025-07-24 21:42:48,025 | INFO     | mean x: 1753382358.0401146
[2025-07-24 17:43:21] 2025-07-24 21:42:48,025 | INFO     | mean y: 2297707.134670487
[2025-07-24 17:43:21] 2025-07-24 21:42:48,025 | INFO     | -- intersect: 12470344331.443361
[2025-07-24 17:43:21] 2025-07-24 21:42:48,025 | INFO     | intersect: 12470344331.443361
[2025-07-24 17:43:21] 2025-07-24 21:42:48,026 | INFO     | chi2: 0.5904307332918883
[2025-07-24 17:43:21] 2025-07-24 21:42:48,026 | INFO     | -- intersect: 12470344331.443361
[2025-07-24 17:43:21] 2025-07-24 21:42:48,026 | INFO     | current memory leak: -7.11 B/s (using 349 data points, chi2=0.59)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,027 | INFO     | could have reported an average CPU frequency of 2613 MHz (16 samples)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,027 | INFO     | ..............................
[2025-07-24 17:43:21] 2025-07-24 21:42:48,027 | INFO     | . Timing measurements:
[2025-07-24 17:43:21] 2025-07-24 21:42:48,027 | INFO     | . get job = 0 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | . initial setup = 3 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | . payload setup = 7 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | . stage-in = 0 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | . payload execution = 22837 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | . stage-out = 2 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | . log creation = 0 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,028 | INFO     | ..............................
[2025-07-24 17:43:21] 2025-07-24 21:42:48,148 | INFO     | 
[2025-07-24 17:43:21] 2025-07-24 21:42:48,151 | INFO     | job summary report
[2025-07-24 17:43:21] 2025-07-24 21:42:48,151 | INFO     | --------------------------------------------------
[2025-07-24 17:43:21] 2025-07-24 21:42:48,151 | INFO     | PanDA job id: 6744773514
[2025-07-24 17:43:21] 2025-07-24 21:42:48,151 | INFO     | task id: 45743349
[2025-07-24 17:43:21] 2025-07-24 21:42:48,151 | INFO     | errors: (none)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | pilot state: finished 
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | transexitcode: 0
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | exeerrorcode: 0
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | exeerrordiag: 
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | exitcode: 0
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | exitmsg: OK
[2025-07-24 17:43:21] 2025-07-24 21:42:48,152 | INFO     | cpuconsumptiontime: 61153 s
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | nevents: 400
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | neventsw: 0
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | pid: 2575534
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | pgrp: 2575534
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | corecount: 10
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | event service: False
[2025-07-24 17:43:21] 2025-07-24 21:42:48,153 | INFO     | sizes: {0: 2397458, 4: 2397720, 11: 2397748, 22848: 2432205, 22852: 2441263, 22857: 2441401}
[2025-07-24 17:43:21] 2025-07-24 21:42:48,154 | INFO     | --------------------------------------------------
[2025-07-24 17:43:21] 2025-07-24 21:42:48,154 | INFO     | 
[2025-07-24 17:43:21] 2025-07-24 21:42:48,154 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-24 17:43:21] 2025-07-24 21:42:48,176 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,176 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,179 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,179 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 17:43:21] 2025-07-24 21:42:48,179 | INFO     | job 6744773514 has completed (purged errors)
[2025-07-24 17:43:21] 2025-07-24 21:42:48,179 | INFO     | overall cleanup function is called
[2025-07-24 17:43:21] 2025-07-24 21:42:49,188 | INFO     | --- collectZombieJob: --- 10, [2575534]
[2025-07-24 17:43:21] 2025-07-24 21:42:49,188 | INFO     | zombie collector waiting for pid 2575534
[2025-07-24 17:43:21] 2025-07-24 21:42:49,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 17:43:21] 2025-07-24 21:42:49,188 | INFO     | collected zombie processes
[2025-07-24 17:43:21] 2025-07-24 21:42:49,189 | INFO     | will attempt to kill all subprocesses of pid=2575534
[2025-07-24 17:43:21] 2025-07-24 21:42:49,501 | INFO     | process IDs to be killed: [2575534] (in reverse order)
[2025-07-24 17:43:21] 2025-07-24 21:42:49,560 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 17:43:21] 2025-07-24 21:42:49,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 17:43:21] 2025-07-24 21:42:49,573 | INFO     | did not find any defunct processes belonging to 2575534
[2025-07-24 17:43:21] 2025-07-24 21:42:49,584 | INFO     | did not find any defunct processes belonging to 2575534
[2025-07-24 17:43:21] 2025-07-24 21:42:49,585 | INFO     | ready for new job
[2025-07-24 17:43:21] 2025-07-24 21:42:49,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 17:43:21] 2025-07-24 21:42:49,588 | INFO     | ***************************************
[2025-07-24 17:43:21] 2025-07-24 21:42:49,588 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 17:43:21] 2025-07-24 21:42:49,588 | INFO     | ***************************************
[2025-07-24 17:43:21] 2025-07-24 21:42:49,588 | INFO     | 
[2025-07-24 17:43:21] 2025-07-24 21:42:49,601 | INFO     | architecture information:
[2025-07-24 17:43:21] 2025-07-24 21:42:49,602 | INFO     | executing command: cat /etc/os-release
[2025-07-24 17:43:21] 2025-07-24 21:42:49,615 | INFO     | cat /etc/os-release:
[2025-07-24 17:43:21] NAME="CentOS Linux"
[2025-07-24 17:43:21] VERSION="7 (Core)"
[2025-07-24 17:43:21] ID="centos"
[2025-07-24 17:43:21] ID_LIKE="rhel fedora"
[2025-07-24 17:43:21] VERSION_ID="7"
[2025-07-24 17:43:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 17:43:21] ANSI_COLOR="0;31"
[2025-07-24 17:43:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 17:43:21] HOME_URL="https://www.centos.org/"
[2025-07-24 17:43:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 17:43:21] 
[2025-07-24 17:43:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 17:43:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 17:43:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 17:43:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 17:43:21] 
[2025-07-24 17:43:21] 2025-07-24 21:42:49,615 | INFO     | ***************************************
[2025-07-24 17:43:21] 2025-07-24 21:42:50,119 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-24 17:43:21] 2025-07-24 21:42:50,137 | INFO     | sufficient remaining disk space (76667682816 B)
[2025-07-24 17:43:21] 2025-07-24 21:42:50,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 17:43:21] 2025-07-24 21:42:50,138 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 17:43:21] 2025-07-24 21:42:50,138 | INFO     | update_server=False
[2025-07-24 17:43:21] 2025-07-24 21:42:50,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 17:43:21] 2025-07-24 21:42:50,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 17:43:21] 2025-07-24 21:42:50,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 17:43:21] 2025-07-24 21:42:50,273 | INFO     | all payload control threads have been joined
[2025-07-24 17:43:21] 2025-07-24 21:42:50,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 17:43:21] 2025-07-24 21:42:50,928 | INFO     | aborting loop
[2025-07-24 17:43:21] 2025-07-24 21:42:50,958 | INFO     | all data control threads have been joined
[2025-07-24 17:43:21] 2025-07-24 21:42:51,143 | INFO     | [job] retrieve thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,144 | INFO     | [job] queue monitor thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,150 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,279 | INFO     | [payload] control thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,315 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 17:43:21] 2025-07-24 21:42:51,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,667 | INFO     | [payload] failed_post thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,740 | INFO     | all job control threads have been joined
[2025-07-24 17:43:21] 2025-07-24 21:42:51,744 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,864 | INFO     | [data] copytool_in thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,899 | INFO     | [job] validate thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,933 | INFO     | [job] job monitor thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:51,963 | INFO     | [data] control thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:52,020 | INFO     | [payload] validate_post thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:52,586 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:52,745 | INFO     | [job] control thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:53,320 | INFO     | [data] copytool_out thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:54,144 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 17:43:21] 2025-07-24 21:42:54,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369574168384)>', '<ExcThread(monitor, started 140368758683392)>']
[2025-07-24 17:43:21] 2025-07-24 21:42:59,364 | INFO     | all workflow threads have been joined
[2025-07-24 17:43:21] 2025-07-24 21:42:59,364 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 17:43:21] 2025-07-24 21:42:59,364 | INFO     | traces error code: 0
[2025-07-24 17:43:21] 2025-07-24 21:42:59,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 17:43:21] 2025-07-24 21:43:20,981 | INFO     | PID=2566017 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 17:43:21] 2025-07-24 21:43:20,982 | INFO     | .. there are 12 such processes running
[2025-07-24 17:43:21] 2025-07-24 21:43:20,983 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 17:43:21] 2025-07-24 21:43:20,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 17:43:21] 2025-07-24 21:43:20,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 17:43:21] 2025-07-24 21:43:20,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 17:43:21] 2025-07-24 21:43:20,983 | INFO     | [monitor] control thread has ended
[2025-07-24 17:43:21] 2025-07-24 21:43:21,114 [wrapper] ==== pilot stdout END ====
[2025-07-24 17:43:21] 2025-07-24 21:43:21,117 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 17:43:21] 2025-07-24 21:43:21,120 [wrapper] pilotpid: 2566017
[2025-07-24 17:43:21] 2025-07-24 21:43:21,122 [wrapper] Pilot exit status: 0
[2025-07-24 17:43:21] 2025-07-24 21:43:21,133 [wrapper] pandaids: 6744773514
[2025-07-24 17:43:21] 2025-07-24 21:43:21,175 [wrapper] cleanup supervisor_pilot 3371440 2566018
[2025-07-24 17:43:21] 2025-07-24 21:43:21,179 [wrapper] Test setup, not cleaning
[2025-07-24 17:43:21] 2025-07-24 21:43:21,182 [wrapper] apfmon messages muted
[2025-07-24 17:43:21] 2025-07-24 21:43:21,186 [wrapper] ==== wrapper stdout END ====
[2025-07-24 17:43:21] 2025-07-24 21:43:21,190 [wrapper] ==== wrapper stderr END ====
[2025-07-24 17:43:21]  *** Error codes and diagnostics ***
[2025-07-24 17:43:21]     "exeErrorCode": 0,
[2025-07-24 17:43:21]     "exeErrorDiag": "",
[2025-07-24 17:43:21]     "pilotErrorCode": 0,
[2025-07-24 17:43:21]     "pilotErrorDiag": "",
[2025-07-24 17:43:21]  *** Listing of results directory ***
[2025-07-24 17:43:21] total 355652
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 11:17 pilot3.tar.gz
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 11:18 queuedata.json
[2025-07-24 17:43:21] -rwx------. 1 boincer umatlas     36292 Jul 24 11:19 runpilot2-wrapper.sh
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas       100 Jul 24 11:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 17:43:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 11:21 run_atlas
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas       105 Jul 24 11:21 job.xml
[2025-07-24 17:43:21] -rw-r--r--. 2 boincer umatlas 145767681 Jul 24 11:21 EVNT.45743347._000138.pool.root.1
[2025-07-24 17:43:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 11:21 start_atlas.sh
[2025-07-24 17:43:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 11:21 shared
[2025-07-24 17:43:21] -rw-r--r--. 2 boincer umatlas    542878 Jul 24 11:21 input.tar.gz
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas         0 Jul 24 11:21 boinc_lockfile
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas      2557 Jul 24 11:21 pandaJob.out
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas    979677 Jul 24 11:21 agis_schedconf.cvmfs.json
[2025-07-24 17:43:21] drwx------. 4 boincer umatlas      4096 Jul 24 11:21 pilot3
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas      6655 Jul 24 17:40 init_data.xml
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas 210059149 Jul 24 17:42 HITS.45743349._002357.pool.root.1
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas       531 Jul 24 17:42 boinc_task_state.xml
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas      1046 Jul 24 17:42 memory_monitor_summary.json
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas   1593052 Jul 24 17:42 agis_ddmendpoints.agis.ALL.json
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas    477314 Jul 24 17:42 log.45743349._002357.job.log.tgz.1
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas      7813 Jul 24 17:42 heartbeat.json
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas        28 Jul 24 17:43 wrapper_checkpoint.txt
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas        95 Jul 24 17:43 pilot_heartbeat.json
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas       823 Jul 24 17:43 pilotlog.txt
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas   1762089 Jul 24 17:43 log.45743349._002357.job.log.1
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 24 17:43 boinc_mmap_file
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas       357 Jul 24 17:43 output.list
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas       620 Jul 24 17:43 runtime_log
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas   2263040 Jul 24 17:43 result.tar.gz
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas       654 Jul 24 17:43 UP0LDmsuCz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeMMLDmVl1wPn.diag
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas      8648 Jul 24 17:43 runtime_log.err
[2025-07-24 17:43:21] -rw-r--r--. 1 boincer umatlas     21283 Jul 24 17:43 stderr.txt
[2025-07-24 17:43:21] HITS file was successfully produced:
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas 210059149 Jul 24 17:42 shared/HITS.pool.root.1
[2025-07-24 17:43:21]  *** Contents of shared directory: ***
[2025-07-24 17:43:21] total 350256
[2025-07-24 17:43:21] -rw-r--r--. 2 boincer umatlas 145767681 Jul 24 11:21 ATLAS.root_0
[2025-07-24 17:43:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 11:21 start_atlas.sh
[2025-07-24 17:43:21] -rw-r--r--. 2 boincer umatlas    542878 Jul 24 11:21 input.tar.gz
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas 210059149 Jul 24 17:42 HITS.pool.root.1
[2025-07-24 17:43:21] -rw-------. 1 boincer umatlas   2263040 Jul 24 17:43 result.tar.gz
17:43:22 (2559980): run_atlas exited; CPU time 61804.615171
17:43:22 (2559980): called boinc_finish(0)

</stderr_txt>
]]>

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