Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:03:45 (26900): wrapper (7.7.26015): starting
09:03:45 (26900): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 09:03:45] Arguments: --nthreads 8
[2025-07-24 09:03:45] Threads: 8
[2025-07-24 09:03:45] Checking for CVMFS
[2025-07-24 09:03:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 09:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 09:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 09:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 09:03:45] 2.11.2.0 2846 107717 110620 148700 2 1 12034026 20275200 771 130560 0 26248470 99.935 10402930 10716 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 09:03:45] CVMFS is ok
[2025-07-24 09:03:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 09:03:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 09:03:45] Further information can be found at the LHC@home message board.
[2025-07-24 09:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 09:03:45] Checking for apptainer binary...
[2025-07-24 09:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 09:03:45] Running /usr/bin/apptainer --version
[2025-07-24 09:03:45] apptainer version 1.3.2-1.el7
[2025-07-24 09:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 09:03:46] c-204-10.aglt2.org
[2025-07-24 09:03:46] apptainer works
[2025-07-24 09:03:46] Set ATHENA_PROC_NUMBER=8
[2025-07-24 09:03:46] Set ATHENA_CORE_NUMBER=8
[2025-07-24 09:03:46] Starting ATLAS job with PandaID=6741692030
[2025-07-24 09:03:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:09:47 (9204): wrapper (7.7.26015): starting
11:09:47 (9204): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 11:09:47] Arguments: --nthreads 8
[2025-07-24 11:09:47] Threads: 8
[2025-07-24 11:09:47] This job has been restarted, cleaning up previous attempt
[2025-07-24 11:09:47] Checking for CVMFS
[2025-07-24 11:09:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 11:09:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 11:09:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 11:09:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 11:09:47] 2.11.2.0 2846 107843 109800 148705 0 40 12066153 20275201 189 130560 0 26328271 99.935 10408225 10719 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 11:09:47] CVMFS is ok
[2025-07-24 11:09:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 11:09:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 11:09:47] Further information can be found at the LHC@home message board.
[2025-07-24 11:09:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 11:09:47] Checking for apptainer binary...
[2025-07-24 11:09:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 11:09:47] Running /usr/bin/apptainer --version
[2025-07-24 11:09:47] apptainer version 1.3.2-1.el7
[2025-07-24 11:09:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 11:09:48] c-204-10.aglt2.org
[2025-07-24 11:09:48] apptainer works
[2025-07-24 11:09:48] Set ATHENA_PROC_NUMBER=8
[2025-07-24 11:09:48] Set ATHENA_CORE_NUMBER=8
[2025-07-24 11:09:48] Starting ATLAS job with PandaID=6741692030
[2025-07-24 11:09:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 14:46:29]  *** The last 200 lines of the pilot log: ***
[2025-07-24 14:46:29] 2025-07-24 18:45:57,242 | INFO     | -- intersect: -27652915215.24493
[2025-07-24 14:46:29] 2025-07-24 18:45:57,242 | INFO     | intersect: -27652915215.24493
[2025-07-24 14:46:29] 2025-07-24 18:45:57,243 | INFO     | chi2: 1.3528965070176548
[2025-07-24 14:46:29] 2025-07-24 18:45:57,243 | INFO     | current chi2=1.3528965070176548 (change=-0.0063456002620151854 %)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,243 | INFO     | right removable region: 206
[2025-07-24 14:46:29] 2025-07-24 18:45:57,243 | INFO     | sum of square deviations: 2750295288.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,245 | INFO     | sum of deviations: 12298391718.999996
[2025-07-24 14:46:29] 2025-07-24 18:45:57,245 | INFO     | mean x: 1753376419.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,245 | INFO     | mean y: 2551191.6666666665
[2025-07-24 14:46:29] 2025-07-24 18:45:57,245 | INFO     | -- intersect: -7837956017.070355
[2025-07-24 14:46:29] 2025-07-24 18:45:57,245 | INFO     | intersect: -7837956017.070355
[2025-07-24 14:46:29] 2025-07-24 18:45:57,245 | INFO     | chi2: 0.029688880303465955
[2025-07-24 14:46:29] 2025-07-24 18:45:57,246 | INFO     | current chi2=0.029688880303465955 (change=97.80539279337907 %)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,246 | INFO     | sum of square deviations: 2555770710.5
[2025-07-24 14:46:29] 2025-07-24 18:45:57,247 | INFO     | sum of deviations: 8002342431.5
[2025-07-24 14:46:29] 2025-07-24 18:45:57,247 | INFO     | mean x: 1753376571.5
[2025-07-24 14:46:29] 2025-07-24 18:45:57,247 | INFO     | mean y: 2554520.668316832
[2025-07-24 14:46:29] 2025-07-24 18:45:57,247 | INFO     | -- intersect: -5487421430.174103
[2025-07-24 14:46:29] 2025-07-24 18:45:57,248 | INFO     | intersect: -5487421430.174103
[2025-07-24 14:46:29] 2025-07-24 18:45:57,248 | INFO     | chi2: 0.0017117077770004742
[2025-07-24 14:46:29] 2025-07-24 18:45:57,248 | INFO     | current chi2=0.0017117077770004742 (change=94.23451555092616 %)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,248 | INFO     | sum of square deviations: 2370641658.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,249 | INFO     | sum of deviations: 6674714916.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,250 | INFO     | mean x: 1753376724.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,250 | INFO     | mean y: 2555618.9187817257
[2025-07-24 14:46:29] 2025-07-24 18:45:57,250 | INFO     | -- intersect: -4934204744.485756
[2025-07-24 14:46:29] 2025-07-24 18:45:57,250 | INFO     | intersect: -4934204744.485756
[2025-07-24 14:46:29] 2025-07-24 18:45:57,250 | INFO     | chi2: 0.0008622812510103631
[2025-07-24 14:46:29] 2025-07-24 18:45:57,250 | INFO     | current chi2=0.0008622812510103631 (change=49.624505853365406 %)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,251 | INFO     | sum of square deviations: 2194675568.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,252 | INFO     | sum of deviations: 5598199268.499999
[2025-07-24 14:46:29] 2025-07-24 18:45:57,252 | INFO     | mean x: 1753376876.5
[2025-07-24 14:46:29] 2025-07-24 18:45:57,252 | INFO     | mean y: 2556549.4114583335
[2025-07-24 14:46:29] 2025-07-24 18:45:57,252 | INFO     | -- intersect: -4469973828.448525
[2025-07-24 14:46:29] 2025-07-24 18:45:57,252 | INFO     | intersect: -4469973828.448525
[2025-07-24 14:46:29] 2025-07-24 18:45:57,253 | INFO     | chi2: 0.0005063706959646154
[2025-07-24 14:46:29] 2025-07-24 18:45:57,253 | INFO     | current chi2=0.0005063706959646154 (change=41.27546025484327 %)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,253 | INFO     | sum of square deviations: 2027639878.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,254 | INFO     | sum of deviations: 4841237489.000002
[2025-07-24 14:46:29] 2025-07-24 18:45:57,254 | INFO     | mean x: 1753377029.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,254 | INFO     | mean y: 2557240.229946524
[2025-07-24 14:46:29] 2025-07-24 18:45:57,255 | INFO     | -- intersect: -4183844249.1307015
[2025-07-24 14:46:29] 2025-07-24 18:45:57,255 | INFO     | intersect: -4183844249.1307015
[2025-07-24 14:46:29] 2025-07-24 18:45:57,255 | INFO     | chi2: 0.0003963903876810395
[2025-07-24 14:46:29] 2025-07-24 18:45:57,255 | INFO     | current chi2=0.0003963903876810395 (change=21.719327196465805 %)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,255 | INFO     | left removable region: 50
[2025-07-24 14:46:29] 2025-07-24 18:45:57,255 | INFO     | sum of square deviations: 1177156955.0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,256 | INFO     | sum of deviations: 2098399420.4999995
[2025-07-24 14:46:29] 2025-07-24 18:45:57,256 | INFO     | mean x: 1753377608.5
[2025-07-24 14:46:29] 2025-07-24 18:45:57,257 | INFO     | mean y: 2559533.955128205
[2025-07-24 14:46:29] 2025-07-24 18:45:57,257 | INFO     | -- intersect: -3123010545.6899223
[2025-07-24 14:46:29] 2025-07-24 18:45:57,257 | INFO     | intersect: -3123010545.6899223
[2025-07-24 14:46:29] 2025-07-24 18:45:57,257 | INFO     | chi2: 8.787290957134897e-05
[2025-07-24 14:46:29] 2025-07-24 18:45:57,257 | INFO     | -- intersect: -3123010545.6899223
[2025-07-24 14:46:29] 2025-07-24 18:45:57,257 | INFO     | current memory leak: 1.78 B/s (using 156 data points, chi2=0.00)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,258 | INFO     | could have reported an average CPU frequency of 2068 MHz (11 samples)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,258 | INFO     | ..............................
[2025-07-24 14:46:29] 2025-07-24 18:45:57,258 | INFO     | . Timing measurements:
[2025-07-24 14:46:29] 2025-07-24 18:45:57,258 | INFO     | . get job = 0 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,258 | INFO     | . initial setup = 1 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,258 | INFO     | . payload setup = 9 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,259 | INFO     | . stage-in = 0 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,259 | INFO     | . payload execution = 12919 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,259 | INFO     | . stage-out = 2 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,259 | INFO     | . log creation = 0 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,259 | INFO     | ..............................
[2025-07-24 14:46:29] 2025-07-24 18:45:57,353 | INFO     | 
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | job summary report
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | --------------------------------------------------
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | PanDA job id: 6741692030
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | task id: 45697532
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | errors: (none)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | pilot state: finished 
[2025-07-24 14:46:29] 2025-07-24 18:45:57,354 | INFO     | transexitcode: 0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | exeerrorcode: 0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | exeerrordiag: 
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | exitcode: 0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | exitmsg: OK
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | cpuconsumptiontime: 87656 s
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | nevents: 400
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | neventsw: 0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,355 | INFO     | pid: 19537
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | pgrp: 19537
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | corecount: 8
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | event service: False
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | sizes: {0: 2397523, 5: 2397785, 11: 2397841, 12929: 2427920, 12930: 2427919, 12933: 2437168, 12940: 2437306}
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | --------------------------------------------------
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | 
[2025-07-24 14:46:29] 2025-07-24 18:45:57,356 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-24 14:46:29] 2025-07-24 18:45:57,382 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,382 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,382 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 14:46:29] 2025-07-24 18:45:57,385 | INFO     | job 6741692030 has completed (purged errors)
[2025-07-24 14:46:29] 2025-07-24 18:45:57,386 | INFO     | overall cleanup function is called
[2025-07-24 14:46:29] 2025-07-24 18:45:58,394 | INFO     | --- collectZombieJob: --- 10, [19537]
[2025-07-24 14:46:29] 2025-07-24 18:45:58,394 | INFO     | zombie collector waiting for pid 19537
[2025-07-24 14:46:29] 2025-07-24 18:45:58,394 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 14:46:29] 2025-07-24 18:45:58,394 | INFO     | collected zombie processes
[2025-07-24 14:46:29] 2025-07-24 18:45:58,394 | INFO     | will attempt to kill all subprocesses of pid=19537
[2025-07-24 14:46:29] 2025-07-24 18:45:58,487 | INFO     | process IDs to be killed: [19537] (in reverse order)
[2025-07-24 14:46:29] 2025-07-24 18:45:58,543 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 14:46:29] 2025-07-24 18:45:58,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 14:46:29] 2025-07-24 18:45:58,547 | INFO     | did not find any defunct processes belonging to 19537
[2025-07-24 14:46:29] 2025-07-24 18:45:58,550 | INFO     | did not find any defunct processes belonging to 19537
[2025-07-24 14:46:29] 2025-07-24 18:45:58,551 | INFO     | ready for new job
[2025-07-24 14:46:29] 2025-07-24 18:45:58,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 14:46:29] 2025-07-24 18:45:58,553 | INFO     | ***************************************
[2025-07-24 14:46:29] 2025-07-24 18:45:58,553 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 14:46:29] 2025-07-24 18:45:58,553 | INFO     | ***************************************
[2025-07-24 14:46:29] 2025-07-24 18:45:58,553 | INFO     | 
[2025-07-24 14:46:29] 2025-07-24 18:45:58,554 | INFO     | architecture information:
[2025-07-24 14:46:29] 2025-07-24 18:45:58,554 | INFO     | executing command: cat /etc/os-release
[2025-07-24 14:46:29] 2025-07-24 18:45:58,572 | INFO     | cat /etc/os-release:
[2025-07-24 14:46:29] NAME="CentOS Linux"
[2025-07-24 14:46:29] VERSION="7 (Core)"
[2025-07-24 14:46:29] ID="centos"
[2025-07-24 14:46:29] ID_LIKE="rhel fedora"
[2025-07-24 14:46:29] VERSION_ID="7"
[2025-07-24 14:46:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 14:46:29] ANSI_COLOR="0;31"
[2025-07-24 14:46:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 14:46:29] HOME_URL="https://www.centos.org/"
[2025-07-24 14:46:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 14:46:29] 
[2025-07-24 14:46:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 14:46:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 14:46:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 14:46:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 14:46:29] 
[2025-07-24 14:46:29] 2025-07-24 18:45:58,573 | INFO     | ***************************************
[2025-07-24 14:46:29] 2025-07-24 18:45:59,076 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-24 14:46:29] 2025-07-24 18:45:59,093 | INFO     | sufficient remaining disk space (18296602624 B)
[2025-07-24 14:46:29] 2025-07-24 18:45:59,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 14:46:29] 2025-07-24 18:45:59,094 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 14:46:29] 2025-07-24 18:45:59,094 | INFO     | update_server=False
[2025-07-24 14:46:29] 2025-07-24 18:45:59,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 14:46:29] 2025-07-24 18:45:59,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 14:46:29] 2025-07-24 18:45:59,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 14:46:29] 2025-07-24 18:45:59,277 | INFO     | all data control threads have been joined
[2025-07-24 14:46:29] 2025-07-24 18:45:59,540 | INFO     | all payload control threads have been joined
[2025-07-24 14:46:29] 2025-07-24 18:45:59,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 14:46:29] 2025-07-24 18:45:59,870 | INFO     | aborting loop
[2025-07-24 14:46:29] 2025-07-24 18:46:00,096 | INFO     | [job] queue monitor thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,100 | INFO     | [job] retrieve thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,158 | INFO     | all job control threads have been joined
[2025-07-24 14:46:29] 2025-07-24 18:46:00,207 | INFO     | [data] copytool_in thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,282 | INFO     | [data] control thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,429 | INFO     | [payload] validate_post thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,465 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,468 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,542 | INFO     | [payload] control thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,738 | INFO     | [job] validate thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 14:46:29] 2025-07-24 18:46:00,860 | INFO     | [payload] failed_post thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:00,875 | INFO     | [job] job monitor thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:01,101 | INFO     | [data] copytool_out thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:01,163 | INFO     | [job] control thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:01,198 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:04,800 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:09,194 | INFO     | job.realtimelogging is not enabled
[2025-07-24 14:46:29] 2025-07-24 18:46:10,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 14:46:29] 2025-07-24 18:46:10,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140263840495424)>', '<ExcThread(monitor, started 140263380981504)>']
[2025-07-24 14:46:29] 2025-07-24 18:46:15,995 | INFO     | all workflow threads have been joined
[2025-07-24 14:46:29] 2025-07-24 18:46:15,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 14:46:29] 2025-07-24 18:46:15,995 | INFO     | traces error code: 0
[2025-07-24 14:46:29] 2025-07-24 18:46:15,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 14:46:29] 2025-07-24 18:46:29,400 | INFO     | PID=12980 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 14:46:29] 2025-07-24 18:46:29,401 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 14:46:29] 2025-07-24 18:46:29,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 14:46:29] 2025-07-24 18:46:29,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 14:46:29] 2025-07-24 18:46:29,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 14:46:29] 2025-07-24 18:46:29,402 | INFO     | [monitor] control thread has ended
[2025-07-24 14:46:29] 2025-07-24 18:46:29,511 [wrapper] ==== pilot stdout END ====
[2025-07-24 14:46:29] 2025-07-24 18:46:29,515 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 14:46:29] 2025-07-24 18:46:29,520 [wrapper] pilotpid: 12980
[2025-07-24 14:46:29] 2025-07-24 18:46:29,524 [wrapper] Pilot exit status: 0
[2025-07-24 14:46:29] 2025-07-24 18:46:29,541 [wrapper] pandaids: 6741692030 6741692030
[2025-07-24 14:46:29] 2025-07-24 18:46:29,585 [wrapper] cleanup supervisor_pilot  4875 12981
[2025-07-24 14:46:29] 2025-07-24 18:46:29,590 [wrapper] Test setup, not cleaning
[2025-07-24 14:46:29] 2025-07-24 18:46:29,595 [wrapper] apfmon messages muted
[2025-07-24 14:46:29] 2025-07-24 18:46:29,599 [wrapper] ==== wrapper stdout END ====
[2025-07-24 14:46:29] 2025-07-24 18:46:29,604 [wrapper] ==== wrapper stderr END ====
[2025-07-24 14:46:29]  *** Error codes and diagnostics ***
[2025-07-24 14:46:29]     "exeErrorCode": 0,
[2025-07-24 14:46:29]     "exeErrorDiag": "",
[2025-07-24 14:46:29]     "pilotErrorCode": 0,
[2025-07-24 14:46:29]     "pilotErrorDiag": "",
[2025-07-24 14:46:29]  *** Listing of results directory ***
[2025-07-24 14:46:29] total 931556
[2025-07-24 14:46:29] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas    530466 Jul 21 17:11 pilot3.tar.gz
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas      5112 Jul 21 17:11 queuedata.json
[2025-07-24 14:46:29] -rwx------ 1 boincer umatlas     36292 Jul 21 17:13 runpilot2-wrapper.sh
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas       100 Jul 24 09:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 14:46:29] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 09:03 run_atlas
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas       105 Jul 24 09:03 job.xml
[2025-07-24 14:46:29] -rw-r--r-- 3 boincer umatlas 330471581 Jul 24 09:03 EVNT.45697530._000019.pool.root.1
[2025-07-24 14:46:29] -rw-r--r-- 3 boincer umatlas 330471581 Jul 24 09:03 ATLAS.root_0
[2025-07-24 14:46:29] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 09:03 start_atlas.sh
[2025-07-24 14:46:29] drwxrwx--x 2 boincer umatlas      4096 Jul 24 09:03 shared
[2025-07-24 14:46:29] -rw-r--r-- 2 boincer umatlas    542891 Jul 24 09:03 input.tar.gz
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas         0 Jul 24 09:03 boinc_lockfile
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas      2607 Jul 24 11:09 pandaJob.out
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas    979685 Jul 24 11:09 agis_schedconf.cvmfs.json
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas      5826 Jul 24 14:36 init_data.xml
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas 286022540 Jul 24 14:45 HITS.45697532._000951.pool.root.1
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas       532 Jul 24 14:45 boinc_task_state.xml
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas      1064 Jul 24 14:45 memory_monitor_summary.json
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas   1593052 Jul 24 14:45 agis_ddmendpoints.agis.ALL.json
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas    374582 Jul 24 14:45 log.45697532._000951.job.log.tgz.1
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas      7852 Jul 24 14:45 heartbeat.json
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 14:46 boinc_mmap_file
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas        29 Jul 24 14:46 wrapper_checkpoint.txt
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas       745 Jul 24 14:46 pilotlog.txt
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas        96 Jul 24 14:46 pilot_heartbeat.json
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas   1162369 Jul 24 14:46 log.45697532._000951.job.log.1
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas       357 Jul 24 14:46 output.list
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas       620 Jul 24 14:46 runtime_log
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas   1556480 Jul 24 14:46 result.tar.gz
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas      8746 Jul 24 14:46 runtime_log.err
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas       789 Jul 24 14:46 EUrLDmrzCy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlgGLDmRT1oQn.diag
[2025-07-24 14:46:29] -rw-r--r-- 1 boincer umatlas     23078 Jul 24 14:46 stderr.txt
[2025-07-24 14:46:29] HITS file was successfully produced:
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas 286022540 Jul 24 14:45 shared/HITS.pool.root.1
[2025-07-24 14:46:29]  *** Contents of shared directory: ***
[2025-07-24 14:46:29] total 604120
[2025-07-24 14:46:29] -rw-r--r-- 3 boincer umatlas 330471581 Jul 24 09:03 ATLAS.root_0
[2025-07-24 14:46:29] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 09:03 start_atlas.sh
[2025-07-24 14:46:29] -rw-r--r-- 2 boincer umatlas    542891 Jul 24 09:03 input.tar.gz
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas 286022540 Jul 24 14:45 HITS.pool.root.1
[2025-07-24 14:46:29] -rw------- 1 boincer umatlas   1556480 Jul 24 14:46 result.tar.gz
14:46:30 (9204): run_atlas exited; CPU time 87096.012861
14:46:30 (9204): called boinc_finish(0)

</stderr_txt>
]]>

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