Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:49:37 (6228): wrapper (7.7.26015): starting
08:49:37 (6228): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 08:49:37] Arguments: --nthreads 12
[2025-07-24 08:49:37] Threads: 12
[2025-07-24 08:49:37] Checking for CVMFS
[2025-07-24 08:49:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 08:49:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 08:49:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 08:49:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 08:49:38] 2.11.2.0 2914 107703 95040 148699 2 1 14201448 20275200 1 130560 0 33776166 99.966 9573051 10530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 08:49:38] CVMFS is ok
[2025-07-24 08:49:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 08:49:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 08:49:38] Further information can be found at the LHC@home message board.
[2025-07-24 08:49:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 08:49:38] Checking for apptainer binary...
[2025-07-24 08:49:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 08:49:38] Running /usr/bin/apptainer --version
[2025-07-24 08:49:38] apptainer version 1.3.2-1.el7
[2025-07-24 08:49:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 08:49:39] c-205-5.aglt2.org
[2025-07-24 08:49:39] apptainer works
[2025-07-24 08:49:39] Set ATHENA_PROC_NUMBER=12
[2025-07-24 08:49:39] Set ATHENA_CORE_NUMBER=12
[2025-07-24 08:49:39] Starting ATLAS job with PandaID=6743008252
[2025-07-24 08:49:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 10:44:49]  *** The last 200 lines of the pilot log: ***
[2025-07-24 10:44:49] 2025-07-24 14:44:17,463 | INFO     | -- intersect: -85308019615.99846
[2025-07-24 10:44:49] 2025-07-24 14:44:17,463 | INFO     | intersect: -85308019615.99846
[2025-07-24 10:44:49] 2025-07-24 14:44:17,463 | INFO     | chi2: 1.4069079457428733
[2025-07-24 10:44:49] 2025-07-24 14:44:17,463 | INFO     | sum of square deviations: 379832238.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,464 | INFO     | sum of deviations: 20037412675.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,464 | INFO     | mean x: 1753364657.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,464 | INFO     | mean y: 2708706.691588785
[2025-07-24 10:44:49] 2025-07-24 14:44:17,464 | INFO     | -- intersect: -92493103094.48793
[2025-07-24 10:44:49] 2025-07-24 14:44:17,464 | INFO     | intersect: -92493103094.48793
[2025-07-24 10:44:49] 2025-07-24 14:44:17,465 | INFO     | chi2: 1.4081835934199802
[2025-07-24 10:44:49] 2025-07-24 14:44:17,465 | INFO     | current chi2=1.4081835934199802 (change=-0.09067030156215423 %)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,465 | INFO     | right removable region: 106
[2025-07-24 10:44:49] 2025-07-24 14:44:17,465 | INFO     | sum of square deviations: 379832238.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,466 | INFO     | sum of deviations: 2540797620.0000005
[2025-07-24 10:44:49] 2025-07-24 14:44:17,466 | INFO     | mean x: 1753364962.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,466 | INFO     | mean y: 2761936.140186916
[2025-07-24 10:44:49] 2025-07-24 14:44:17,466 | INFO     | -- intersect: -11725956894.832216
[2025-07-24 10:44:49] 2025-07-24 14:44:17,466 | INFO     | intersect: -11725956894.832216
[2025-07-24 10:44:49] 2025-07-24 14:44:17,467 | INFO     | chi2: 0.018153626446045474
[2025-07-24 10:44:49] 2025-07-24 14:44:17,467 | INFO     | current chi2=0.018153626446045474 (change=98.70967915840008 %)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,467 | INFO     | sum of square deviations: 329031285.5
[2025-07-24 10:44:49] 2025-07-24 14:44:17,468 | INFO     | sum of deviations: 498739415.99999994
[2025-07-24 10:44:49] 2025-07-24 14:44:17,468 | INFO     | mean x: 1753365114.5
[2025-07-24 10:44:49] 2025-07-24 14:44:17,468 | INFO     | mean y: 2767945.2352941176
[2025-07-24 10:44:49] 2025-07-24 14:44:17,468 | INFO     | -- intersect: -2654949821.3644505
[2025-07-24 10:44:49] 2025-07-24 14:44:17,469 | INFO     | sufficient remaining disk space (29006757888 B)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,469 | INFO     | intersect: -2654949821.3644505
[2025-07-24 10:44:49] 2025-07-24 14:44:17,469 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,469 | INFO     | chi2: 0.0014633040929593838
[2025-07-24 10:44:49] 2025-07-24 14:44:17,469 | INFO     | current chi2=0.0014633040929593838 (change=91.93932905191984 %)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,470 | INFO     | sum of square deviations: 282974608.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,470 | INFO     | sum of deviations: 599489943.9999998
[2025-07-24 10:44:49] 2025-07-24 14:44:17,470 | INFO     | mean x: 1753365267.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,470 | INFO     | mean y: 2767597.3298969073
[2025-07-24 10:44:49] 2025-07-24 14:44:17,470 | INFO     | -- intersect: -3711787758.5533934
[2025-07-24 10:44:49] 2025-07-24 14:44:17,471 | INFO     | intersect: -3711787758.5533934
[2025-07-24 10:44:49] 2025-07-24 14:44:17,471 | INFO     | chi2: 0.0012968469390340705
[2025-07-24 10:44:49] 2025-07-24 14:44:17,471 | INFO     | current chi2=0.0012968469390340705 (change=11.375431444920697 %)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,471 | INFO     | left removable region: 30
[2025-07-24 10:44:49] 2025-07-24 14:44:17,471 | INFO     | sum of square deviations: 136095575.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,472 | INFO     | sum of deviations: 437583256.0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,472 | INFO     | mean x: 1753365541.5
[2025-07-24 10:44:49] 2025-07-24 14:44:17,472 | INFO     | mean y: 2766987.947368421
[2025-07-24 10:44:49] 2025-07-24 14:44:17,472 | INFO     | -- intersect: -5634766801.139993
[2025-07-24 10:44:49] 2025-07-24 14:44:17,472 | INFO     | intersect: -5634766801.139993
[2025-07-24 10:44:49] 2025-07-24 14:44:17,473 | INFO     | chi2: 9.769090066038516e-05
[2025-07-24 10:44:49] 2025-07-24 14:44:17,473 | INFO     | -- intersect: -5634766801.139993
[2025-07-24 10:44:49] 2025-07-24 14:44:17,473 | INFO     | current memory leak: 3.22 B/s (using 76 data points, chi2=0.00)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,473 | INFO     | could have reported an average CPU frequency of 2134 MHz (7 samples)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,473 | INFO     | ..............................
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . Timing measurements:
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . get job = 0 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . initial setup = 2 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . payload setup = 9 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . stage-in = 0 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . payload execution = 6827 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . stage-out = 0 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,474 | INFO     | . log creation = 0 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,475 | INFO     | ..............................
[2025-07-24 10:44:49] 2025-07-24 14:44:17,559 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6743008252: 4433651 B (within 2537553920 B limit)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,559 | INFO     | 
[2025-07-24 10:44:49] 2025-07-24 14:44:17,559 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6743008252/HITS.45697541._005189.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,560 | INFO     | job summary report
[2025-07-24 10:44:49] 2025-07-24 14:44:17,560 | INFO     | total size of present files: 0 B (workdir size: 4433651 B)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,560 | INFO     | --------------------------------------------------
[2025-07-24 10:44:49] 2025-07-24 14:44:17,560 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6743008252/HITS.45697541._005189.pool.root.1 since it does not exist
[2025-07-24 10:44:49] 2025-07-24 14:44:17,560 | INFO     | PanDA job id: 6743008252
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | task id: 45697541
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | errors: (none)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | pilot state: finished 
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | transexitcode: 0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | exeerrorcode: 0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,561 | INFO     | exeerrordiag: 
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | exitcode: 0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | exitmsg: OK
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | cpuconsumptiontime: 76360 s
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | nevents: 400
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | neventsw: 0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | pid: 18036
[2025-07-24 10:44:49] 2025-07-24 14:44:17,562 | INFO     | pgrp: 18036
[2025-07-24 10:44:49] 2025-07-24 14:44:17,563 | INFO     | corecount: 12
[2025-07-24 10:44:49] 2025-07-24 14:44:17,563 | INFO     | event service: False
[2025-07-24 10:44:49] 2025-07-24 14:44:17,563 | INFO     | sizes: {0: 2397508, 5: 2397770, 11: 2397826, 6840: 2424973, 6841: 2424972, 6842: 2434210, 6848: 2434348}
[2025-07-24 10:44:49] 2025-07-24 14:44:17,563 | INFO     | --------------------------------------------------
[2025-07-24 10:44:49] 2025-07-24 14:44:17,563 | INFO     | 
[2025-07-24 10:44:49] 2025-07-24 14:44:17,564 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-24 10:44:49] 2025-07-24 14:44:17,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,589 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,589 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,590 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,590 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,590 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,593 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 10:44:49] 2025-07-24 14:44:17,593 | INFO     | job 6743008252 has completed (purged errors)
[2025-07-24 10:44:49] 2025-07-24 14:44:17,593 | INFO     | overall cleanup function is called
[2025-07-24 10:44:49] 2025-07-24 14:44:17,668 | INFO     | number of running child processes to parent process 18036: 1
[2025-07-24 10:44:49] 2025-07-24 14:44:17,668 | INFO     | maximum number of monitored processes: 6
[2025-07-24 10:44:49] 2025-07-24 14:44:17,668 | INFO     | aborting job monitoring since job object (job id=6743008252) has expired
[2025-07-24 10:44:49] 2025-07-24 14:44:18,603 | INFO     | --- collectZombieJob: --- 10, [18036]
[2025-07-24 10:44:49] 2025-07-24 14:44:18,603 | INFO     | zombie collector waiting for pid 18036
[2025-07-24 10:44:49] 2025-07-24 14:44:18,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 10:44:49] 2025-07-24 14:44:18,603 | INFO     | collected zombie processes
[2025-07-24 10:44:49] 2025-07-24 14:44:18,603 | INFO     | will attempt to kill all subprocesses of pid=18036
[2025-07-24 10:44:49] 2025-07-24 14:44:18,691 | INFO     | process IDs to be killed: [18036] (in reverse order)
[2025-07-24 10:44:49] 2025-07-24 14:44:18,739 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 10:44:49] 2025-07-24 14:44:18,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 10:44:49] 2025-07-24 14:44:18,743 | INFO     | did not find any defunct processes belonging to 18036
[2025-07-24 10:44:49] 2025-07-24 14:44:18,747 | INFO     | did not find any defunct processes belonging to 18036
[2025-07-24 10:44:49] 2025-07-24 14:44:18,747 | INFO     | ready for new job
[2025-07-24 10:44:49] 2025-07-24 14:44:18,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 10:44:49] 2025-07-24 14:44:18,749 | INFO     | ***************************************
[2025-07-24 10:44:49] 2025-07-24 14:44:18,749 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 10:44:49] 2025-07-24 14:44:18,749 | INFO     | ***************************************
[2025-07-24 10:44:49] 2025-07-24 14:44:18,749 | INFO     | 
[2025-07-24 10:44:49] 2025-07-24 14:44:18,749 | INFO     | architecture information:
[2025-07-24 10:44:49] 2025-07-24 14:44:18,750 | INFO     | executing command: cat /etc/os-release
[2025-07-24 10:44:49] 2025-07-24 14:44:18,764 | INFO     | cat /etc/os-release:
[2025-07-24 10:44:49] NAME="CentOS Linux"
[2025-07-24 10:44:49] VERSION="7 (Core)"
[2025-07-24 10:44:49] ID="centos"
[2025-07-24 10:44:49] ID_LIKE="rhel fedora"
[2025-07-24 10:44:49] VERSION_ID="7"
[2025-07-24 10:44:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 10:44:49] ANSI_COLOR="0;31"
[2025-07-24 10:44:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 10:44:49] HOME_URL="https://www.centos.org/"
[2025-07-24 10:44:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 10:44:49] 
[2025-07-24 10:44:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 10:44:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 10:44:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 10:44:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 10:44:49] 
[2025-07-24 10:44:49] 2025-07-24 14:44:18,764 | INFO     | ***************************************
[2025-07-24 10:44:49] 2025-07-24 14:44:19,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-24 10:44:49] 2025-07-24 14:44:19,284 | INFO     | sufficient remaining disk space (29012000768 B)
[2025-07-24 10:44:49] 2025-07-24 14:44:19,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 10:44:49] 2025-07-24 14:44:19,284 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 10:44:49] 2025-07-24 14:44:19,284 | INFO     | update_server=False
[2025-07-24 10:44:49] 2025-07-24 14:44:19,285 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 10:44:49] 2025-07-24 14:44:19,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 10:44:49] 2025-07-24 14:44:19,285 | INFO     | aborting loop
[2025-07-24 10:44:49] 2025-07-24 14:44:19,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 10:44:49] 2025-07-24 14:44:19,436 | INFO     | all data control threads have been joined
[2025-07-24 10:44:49] 2025-07-24 14:44:19,498 | INFO     | all job control threads have been joined
[2025-07-24 10:44:49] 2025-07-24 14:44:19,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 10:44:49] 2025-07-24 14:44:19,542 | INFO     | all payload control threads have been joined
[2025-07-24 10:44:49] 2025-07-24 14:44:20,287 | INFO     | [job] queue monitor thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,290 | INFO     | [job] retrieve thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,291 | INFO     | [job] job monitor thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,370 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,376 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,389 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,441 | INFO     | [data] control thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,504 | INFO     | [job] control thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,548 | INFO     | [payload] control thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:20,707 | INFO     | [payload] failed_post thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:21,091 | INFO     | [data] copytool_in thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:21,092 | INFO     | [payload] validate_post thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:21,535 | INFO     | [data] copytool_out thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:21,544 | INFO     | [job] validate thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:22,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 10:44:49] 2025-07-24 14:44:26,118 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:30,206 | INFO     | job.realtimelogging is not enabled
[2025-07-24 10:44:49] 2025-07-24 14:44:31,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 10:44:49] 2025-07-24 14:44:33,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140098922841920)>', '<ExcThread(monitor, started 140098209314560)>']
[2025-07-24 10:44:49] 2025-07-24 14:44:38,180 | INFO     | all workflow threads have been joined
[2025-07-24 10:44:49] 2025-07-24 14:44:38,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 10:44:49] 2025-07-24 14:44:38,186 | INFO     | traces error code: 0
[2025-07-24 10:44:49] 2025-07-24 14:44:38,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 10:44:49] 2025-07-24 14:44:49,000 | INFO     | PID=9916 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-24 10:44:49] 2025-07-24 14:44:49,001 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 10:44:49] 2025-07-24 14:44:49,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 10:44:49] 2025-07-24 14:44:49,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 10:44:49] 2025-07-24 14:44:49,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 10:44:49] 2025-07-24 14:44:49,001 | INFO     | [monitor] control thread has ended
[2025-07-24 10:44:49] 2025-07-24 14:44:49,088 [wrapper] ==== pilot stdout END ====
[2025-07-24 10:44:49] 2025-07-24 14:44:49,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 10:44:49] 2025-07-24 14:44:49,095 [wrapper] pilotpid: 9916
[2025-07-24 10:44:49] 2025-07-24 14:44:49,099 [wrapper] Pilot exit status: 0
[2025-07-24 10:44:49] 2025-07-24 14:44:49,115 [wrapper] pandaids: 6743008252
[2025-07-24 10:44:49] 2025-07-24 14:44:49,157 [wrapper] cleanup supervisor_pilot 17272 9917
[2025-07-24 10:44:49] 2025-07-24 14:44:49,160 [wrapper] Test setup, not cleaning
[2025-07-24 10:44:49] 2025-07-24 14:44:49,164 [wrapper] apfmon messages muted
[2025-07-24 10:44:49] 2025-07-24 14:44:49,168 [wrapper] ==== wrapper stdout END ====
[2025-07-24 10:44:49] 2025-07-24 14:44:49,172 [wrapper] ==== wrapper stderr END ====
[2025-07-24 10:44:49]  *** Error codes and diagnostics ***
[2025-07-24 10:44:49]     "exeErrorCode": 0,
[2025-07-24 10:44:49]     "exeErrorDiag": "",
[2025-07-24 10:44:49]     "pilotErrorCode": 0,
[2025-07-24 10:44:49]     "pilotErrorDiag": "",
[2025-07-24 10:44:49]  *** Listing of results directory ***
[2025-07-24 10:44:49] total 646520
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas    530466 Jul 22 23:19 pilot3.tar.gz
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas      5112 Jul 22 23:20 queuedata.json
[2025-07-24 10:44:49] -rwx------ 1 boincer umatlas     36292 Jul 22 23:21 runpilot2-wrapper.sh
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas       100 Jul 24 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 10:44:49] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 08:49 run_atlas
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas       105 Jul 24 08:49 job.xml
[2025-07-24 10:44:49] -rw-r--r-- 2 boincer umatlas 347378578 Jul 24 08:49 EVNT.45697539._000174.pool.root.1
[2025-07-24 10:44:49] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 08:49 start_atlas.sh
[2025-07-24 10:44:49] drwxrwx--x 2 boincer umatlas      4096 Jul 24 08:49 shared
[2025-07-24 10:44:49] -rw-r--r-- 2 boincer umatlas    542892 Jul 24 08:49 input.tar.gz
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas         0 Jul 24 08:49 boinc_lockfile
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas      2594 Jul 24 08:49 pandaJob.out
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas    979599 Jul 24 08:49 agis_schedconf.cvmfs.json
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas   1593041 Jul 24 08:49 agis_ddmendpoints.agis.ALL.json
[2025-07-24 10:44:49] drwx------ 4 boincer umatlas      4096 Jul 24 08:49 pilot3
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas      5866 Jul 24 10:39 init_data.xml
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas 308744802 Jul 24 10:43 HITS.45697541._005189.pool.root.1
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas       530 Jul 24 10:43 boinc_task_state.xml
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas      1044 Jul 24 10:44 memory_monitor_summary.json
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas    382168 Jul 24 10:44 log.45697541._005189.job.log.tgz.1
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas      7841 Jul 24 10:44 heartbeat.json
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 10:44 boinc_mmap_file
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas        27 Jul 24 10:44 wrapper_checkpoint.txt
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas        95 Jul 24 10:44 pilot_heartbeat.json
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas       744 Jul 24 10:44 pilotlog.txt
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas    634347 Jul 24 10:44 log.45697541._005189.job.log.1
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas       357 Jul 24 10:44 output.list
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas       620 Jul 24 10:44 runtime_log
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas   1034240 Jul 24 10:44 result.tar.gz
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas      8657 Jul 24 10:44 runtime_log.err
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas       660 Jul 24 10:44 i1DMDmHEfy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwnKLDmyZeBOn.diag
[2025-07-24 10:44:49] -rw-r--r-- 1 boincer umatlas     21328 Jul 24 10:44 stderr.txt
[2025-07-24 10:44:49] HITS file was successfully produced:
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas 308744802 Jul 24 10:43 shared/HITS.pool.root.1
[2025-07-24 10:44:49]  *** Contents of shared directory: ***
[2025-07-24 10:44:49] total 642320
[2025-07-24 10:44:49] -rw-r--r-- 2 boincer umatlas 347378578 Jul 24 08:49 ATLAS.root_0
[2025-07-24 10:44:49] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 08:49 start_atlas.sh
[2025-07-24 10:44:49] -rw-r--r-- 2 boincer umatlas    542892 Jul 24 08:49 input.tar.gz
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas 308744802 Jul 24 10:43 HITS.pool.root.1
[2025-07-24 10:44:49] -rw------- 1 boincer umatlas   1034240 Jul 24 10:44 result.tar.gz
10:44:50 (6228): run_atlas exited; CPU time 76336.390258
10:44:50 (6228): called boinc_finish(0)

</stderr_txt>
]]>

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