Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:28:44 (15591): wrapper (7.7.26015): starting
06:28:44 (15591): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 06:28:44] Arguments: --nthreads 8
[2025-07-24 06:28:44] Threads: 8
[2025-07-24 06:28:44] Checking for CVMFS
[2025-07-24 06:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 06:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 06:28:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 06:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 06:28:45] 2.11.2.0 5073 41295 383436 148694 2 187 12884490 18432001 2909 130560 0 99044891 99.444 139561989 66794 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 06:28:45] CVMFS is ok
[2025-07-24 06:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 06:28:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 06:28:45] Further information can be found at the LHC@home message board.
[2025-07-24 06:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 06:28:45] Checking for apptainer binary...
[2025-07-24 06:28:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 06:28:45] Running /usr/bin/apptainer --version
[2025-07-24 06:28:45] apptainer version 1.3.2-1.el7
[2025-07-24 06:28:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 06:28:45] c-211-39.aglt2.org
[2025-07-24 06:28:45] apptainer works
[2025-07-24 06:28:45] Set ATHENA_PROC_NUMBER=8
[2025-07-24 06:28:45] Set ATHENA_CORE_NUMBER=8
[2025-07-24 06:28:45] Starting ATLAS job with PandaID=6744531404
[2025-07-24 06:28:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 07:56:25]  *** The last 200 lines of the pilot log: ***
[2025-07-24 07:56:25]  status=None
[2025-07-24 07:56:25]  status_code=0
[2025-07-24 07:56:25]  storage_token=
[2025-07-24 07:56:25]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6744531404/log.45668889._001252.job.log.tgz.1
[2025-07-24 07:56:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/35/log.45668889._001252.job.log.tgz.1
[2025-07-24 07:56:25]  workdir=None
[2025-07-24 07:56:25] ]
[2025-07-24 07:56:25] 2025-07-24 11:55:51,333 | INFO     | transferring file log.45668889._001252.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6744531404/log.45668889._001252.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-24 07:56:25] 2025-07-24 11:55:51,333 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6744531404/log.45668889._001252.job.log.tgz.1 /tmp/boinchome/slots/5/log.45668889._001252.job
[2025-07-24 07:56:25] 2025-07-24 11:55:51,346 | INFO     | adding to output.list: log.45668889._001252.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/35/log.45668889._001252.job.log.tg
[2025-07-24 07:56:25] 2025-07-24 11:55:51,346 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 07:56:25] 2025-07-24 11:55:51,346 | INFO     | summary of transferred files:
[2025-07-24 07:56:25] 2025-07-24 11:55:51,346 | INFO     |  -- lfn=log.45668889._001252.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 07:56:25] 2025-07-24 11:55:51,346 | INFO     | stage-out finished correctly
[2025-07-24 07:56:25] 2025-07-24 11:55:51,405 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 07:56:25] 2025-07-24 11:55:51,466 | INFO     | job 6744531404 has state=finished
[2025-07-24 07:56:25] 2025-07-24 11:55:51,466 | INFO     | preparing for final server update for job 6744531404 in state='finished'
[2025-07-24 07:56:25] 2025-07-24 11:55:51,467 | INFO     | this job has now completed (state=finished)
[2025-07-24 07:56:25] 2025-07-24 11:55:51,467 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 07:56:25] 2025-07-24 11:55:51,467 | INFO     | log transfer has been attempted: DONE
[2025-07-24 07:56:25] 2025-07-24 11:55:51,467 | INFO     | job 6744531404 has finished - writing final server update
[2025-07-24 07:56:25] 2025-07-24 11:55:51,468 | INFO     | total number of processed events: 400 (read)
[2025-07-24 07:56:25] 2025-07-24 11:55:51,468 | INFO     | executing command: lscpu
[2025-07-24 07:56:25] 2025-07-24 11:55:51,490 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 07:56:25] 2025-07-24 11:55:53,524 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 07:56:25] 2025-07-24 11:55:53,526 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2994.348999999997
[2025-07-24 07:56:25] 2025-07-24 11:55:53,532 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6744531404/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 07:56:25] 2025-07-24 11:55:53,533 | INFO     | extracted standard info from prmon json
[2025-07-24 07:56:25] 2025-07-24 11:55:53,533 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 07:56:25] 2025-07-24 11:55:53,533 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 07:56:25] 2025-07-24 11:55:53,533 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 07:56:25] 2025-07-24 11:55:53,533 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 07:56:25] 2025-07-24 11:55:53,534 | INFO     | fitting pss+swap vs Time
[2025-07-24 07:56:25] 2025-07-24 11:55:53,534 | INFO     | sum of square deviations: 152858680.0
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | sum of deviations: -128808942.00000013
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | mean x: 1753355636.0
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | mean y: 2525946.075949367
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | -- intersect: 1480020612.5410619
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | intersect: 1480020612.5410619
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | chi2: 0.0015974668327365204
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | -- intersect: 1480020612.5410619
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | current memory leak: -0.84 B/s (using 79 data points, chi2=0.00)
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | could have reported an average CPU frequency of 2994 MHz (6 samples)
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | ..............................
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | . Timing measurements:
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | . get job = 0 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,535 | INFO     | . initial setup = 2 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,536 | INFO     | . payload setup = 3 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,536 | INFO     | . stage-in = 0 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,536 | INFO     | . payload execution = 5198 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,536 | INFO     | . stage-out = 0 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,536 | INFO     | . log creation = 0 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,536 | INFO     | ..............................
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | 
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | job summary report
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | --------------------------------------------------
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | PanDA job id: 6744531404
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | task id: 45668889
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | errors: (none)
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | pilot state: finished 
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | transexitcode: 0
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | exeerrorcode: 0
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | exeerrordiag: 
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | exitcode: 0
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | exitmsg: OK
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | cpuconsumptiontime: 39305 s
[2025-07-24 07:56:25] 2025-07-24 11:55:53,589 | INFO     | nevents: 400
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | neventsw: 0
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | pid: 37009
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | pgrp: 37009
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | corecount: 8
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | event service: False
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | sizes: {0: 2397368, 3: 2397630, 11: 2397658, 5205: 2424142, 5206: 2433195, 5208: 2433333}
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | --------------------------------------------------
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | 
[2025-07-24 07:56:25] 2025-07-24 11:55:53,590 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-24 07:56:25] 2025-07-24 11:55:53,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,604 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 07:56:25] 2025-07-24 11:55:53,605 | INFO     | job 6744531404 has completed (purged errors)
[2025-07-24 07:56:25] 2025-07-24 11:55:53,605 | INFO     | overall cleanup function is called
[2025-07-24 07:56:25] 2025-07-24 11:55:54,608 | INFO     | --- collectZombieJob: --- 10, [37009]
[2025-07-24 07:56:25] 2025-07-24 11:55:54,608 | INFO     | zombie collector waiting for pid 37009
[2025-07-24 07:56:25] 2025-07-24 11:55:54,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 07:56:25] 2025-07-24 11:55:54,609 | INFO     | collected zombie processes
[2025-07-24 07:56:25] 2025-07-24 11:55:54,609 | INFO     | will attempt to kill all subprocesses of pid=37009
[2025-07-24 07:56:25] 2025-07-24 11:55:54,742 | INFO     | process IDs to be killed: [37009] (in reverse order)
[2025-07-24 07:56:25] 2025-07-24 11:55:54,787 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 07:56:25] 2025-07-24 11:55:54,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 07:56:25] 2025-07-24 11:55:54,796 | INFO     | did not find any defunct processes belonging to 37009
[2025-07-24 07:56:25] 2025-07-24 11:55:54,799 | INFO     | did not find any defunct processes belonging to 37009
[2025-07-24 07:56:25] 2025-07-24 11:55:54,799 | INFO     | ready for new job
[2025-07-24 07:56:25] 2025-07-24 11:55:54,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 07:56:25] 2025-07-24 11:55:54,801 | INFO     | ***************************************
[2025-07-24 07:56:25] 2025-07-24 11:55:54,801 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 07:56:25] 2025-07-24 11:55:54,801 | INFO     | ***************************************
[2025-07-24 07:56:25] 2025-07-24 11:55:54,801 | INFO     | 
[2025-07-24 07:56:25] 2025-07-24 11:55:54,804 | INFO     | architecture information:
[2025-07-24 07:56:25] 2025-07-24 11:55:54,804 | INFO     | executing command: cat /etc/os-release
[2025-07-24 07:56:25] 2025-07-24 11:55:54,814 | INFO     | cat /etc/os-release:
[2025-07-24 07:56:25] NAME="CentOS Linux"
[2025-07-24 07:56:25] VERSION="7 (Core)"
[2025-07-24 07:56:25] ID="centos"
[2025-07-24 07:56:25] ID_LIKE="rhel fedora"
[2025-07-24 07:56:25] VERSION_ID="7"
[2025-07-24 07:56:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 07:56:25] ANSI_COLOR="0;31"
[2025-07-24 07:56:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 07:56:25] HOME_URL="https://www.centos.org/"
[2025-07-24 07:56:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 07:56:25] 
[2025-07-24 07:56:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 07:56:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 07:56:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 07:56:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 07:56:25] 
[2025-07-24 07:56:25] 2025-07-24 11:55:54,814 | INFO     | ***************************************
[2025-07-24 07:56:25] 2025-07-24 11:55:54,818 | WARNING  | process 37009 can no longer be monitored (due to stat problems) - aborting
[2025-07-24 07:56:25] 2025-07-24 11:55:54,887 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 07:56:25] 2025-07-24 11:55:54,888 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 07:56:25] 2025-07-24 11:55:54,888 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/5/PanDA_Pilot-6744531404/payload.stdout) since it has not been created yet
[2025-07-24 07:56:25] 2025-07-24 11:55:54,888 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-24 07:56:25] 2025-07-24 11:55:54,898 | INFO     | sufficient remaining disk space (72562507776 B)
[2025-07-24 07:56:25] 2025-07-24 11:55:54,899 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-07-24 07:56:25] 2025-07-24 11:55:54,899 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/5/PanDA_Pilot-6744531404/HITS.45668889._001252.pool.root.1 since it does not exist
[2025-07-24 07:56:25] 2025-07-24 11:55:54,994 | INFO     | number of running child processes to parent process 37009: 1
[2025-07-24 07:56:25] 2025-07-24 11:55:54,994 | INFO     | maximum number of monitored processes: 6
[2025-07-24 07:56:25] 2025-07-24 11:55:54,994 | INFO     | aborting job monitoring since job object (job id=6744531404) has expired
[2025-07-24 07:56:25] 2025-07-24 11:55:55,317 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | INFO     | sufficient remaining disk space (72562507776 B)
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | INFO     | update_server=False
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 07:56:25] 2025-07-24 11:55:55,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 07:56:25] 2025-07-24 11:55:55,329 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 07:56:25] 2025-07-24 11:55:55,329 | INFO     | will abort loop
[2025-07-24 07:56:25] 2025-07-24 11:55:55,516 | INFO     | all data control threads have been joined
[2025-07-24 07:56:25] 2025-07-24 11:55:56,018 | INFO     | all job control threads have been joined
[2025-07-24 07:56:25] 2025-07-24 11:55:56,333 | INFO     | [job] retrieve thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,334 | INFO     | [job] queue monitor thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,335 | INFO     | [job] job monitor thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,343 | INFO     | [data] copytool_in thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,369 | INFO     | all payload control threads have been joined
[2025-07-24 07:56:25] 2025-07-24 11:55:56,427 | INFO     | [payload] validate_post thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,521 | INFO     | [data] control thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,670 | INFO     | [job] validate thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,934 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:56,967 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:57,024 | INFO     | [job] control thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:57,108 | INFO     | [payload] failed_post thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:57,335 | INFO     | [data] copytool_out thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:57,374 | INFO     | [payload] control thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:55:57,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 07:56:25] 2025-07-24 11:55:57,578 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:56:01,476 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:56:05,661 | INFO     | job.realtimelogging is not enabled
[2025-07-24 07:56:25] 2025-07-24 11:56:06,666 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 07:56:25] 2025-07-24 11:56:07,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806155085632)>', '<ExcThread(monitor, started 139805723707136)>']
[2025-07-24 07:56:25] 2025-07-24 11:56:12,378 | INFO     | all workflow threads have been joined
[2025-07-24 07:56:25] 2025-07-24 11:56:12,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 07:56:25] 2025-07-24 11:56:12,379 | INFO     | traces error code: 0
[2025-07-24 07:56:25] 2025-07-24 11:56:12,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 07:56:25] 2025-07-24 11:56:24,369 | INFO     | 5224s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | INFO     | PID=22411 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | INFO     | .. there are 4 such processes running
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 07:56:25] 2025-07-24 11:56:25,490 | INFO     | [monitor] control thread has ended
[2025-07-24 07:56:25] 2025-07-24 11:56:25,577 [wrapper] ==== pilot stdout END ====
[2025-07-24 07:56:25] 2025-07-24 11:56:25,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 07:56:25] 2025-07-24 11:56:25,580 [wrapper] pilotpid: 22411
[2025-07-24 07:56:25] 2025-07-24 11:56:25,582 [wrapper] Pilot exit status: 0
[2025-07-24 07:56:25] 2025-07-24 11:56:25,587 [wrapper] pandaids: 6744531404
[2025-07-24 07:56:25] 2025-07-24 11:56:25,617 [wrapper] cleanup supervisor_pilot 27740 22412
[2025-07-24 07:56:25] 2025-07-24 11:56:25,618 [wrapper] Test setup, not cleaning
[2025-07-24 07:56:25] 2025-07-24 11:56:25,620 [wrapper] apfmon messages muted
[2025-07-24 07:56:25] 2025-07-24 11:56:25,621 [wrapper] ==== wrapper stdout END ====
[2025-07-24 07:56:25] 2025-07-24 11:56:25,623 [wrapper] ==== wrapper stderr END ====
[2025-07-24 07:56:25]  *** Error codes and diagnostics ***
[2025-07-24 07:56:25]     "exeErrorCode": 0,
[2025-07-24 07:56:25]     "exeErrorDiag": "",
[2025-07-24 07:56:25]     "pilotErrorCode": 0,
[2025-07-24 07:56:25]     "pilotErrorDiag": "",
[2025-07-24 07:56:25]  *** Listing of results directory ***
[2025-07-24 07:56:25] total 527156
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 05:42 pilot3.tar.gz
[2025-07-24 07:56:25] -rwx------ 1 boincer umatlas     36292 Jul 24 06:27 runpilot2-wrapper.sh
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 06:27 queuedata.json
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas       100 Jul 24 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 07:56:25] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 06:28 run_atlas
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas       105 Jul 24 06:28 job.xml
[2025-07-24 07:56:25] -rw-r--r-- 2 boincer umatlas 305095210 Jul 24 06:28 EVNT.45668886._000035.pool.root.1
[2025-07-24 07:56:25] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 06:28 start_atlas.sh
[2025-07-24 07:56:25] drwxrwx--x 2 boincer umatlas      4096 Jul 24 06:28 shared
[2025-07-24 07:56:25] -rw-r--r-- 2 boincer umatlas    542873 Jul 24 06:28 input.tar.gz
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas         0 Jul 24 06:28 boinc_lockfile
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas      2537 Jul 24 06:28 pandaJob.out
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas    978939 Jul 24 06:28 agis_schedconf.cvmfs.json
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas   1593041 Jul 24 06:28 agis_ddmendpoints.agis.ALL.json
[2025-07-24 07:56:25] drwx------ 4 boincer umatlas      4096 Jul 24 06:28 pilot3
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas      6338 Jul 24 07:55 init_data.xml
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas 229194622 Jul 24 07:55 HITS.45668889._001252.pool.root.1
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas       529 Jul 24 07:55 boinc_task_state.xml
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas      1029 Jul 24 07:55 memory_monitor_summary.json
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas    310760 Jul 24 07:55 log.45668889._001252.job.log.tgz.1
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas        95 Jul 24 07:55 pilot_heartbeat.json
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas      7770 Jul 24 07:55 heartbeat.json
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 07:56 boinc_mmap_file
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas        27 Jul 24 07:56 wrapper_checkpoint.txt
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas       935 Jul 24 07:56 pilotlog.txt
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas    512393 Jul 24 07:56 log.45668889._001252.job.log.1
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas       357 Jul 24 07:56 output.list
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas       620 Jul 24 07:56 runtime_log
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas    839680 Jul 24 07:56 result.tar.gz
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas      8660 Jul 24 07:56 runtime_log.err
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas       658 Jul 24 07:56 cYULDmML8y7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmEMLDm4pNAEm.diag
[2025-07-24 07:56:25] -rw-r--r-- 1 boincer umatlas     22136 Jul 24 07:56 stderr.txt
[2025-07-24 07:56:25] HITS file was successfully produced:
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas 229194622 Jul 24 07:55 shared/HITS.pool.root.1
[2025-07-24 07:56:25]  *** Contents of shared directory: ***
[2025-07-24 07:56:25] total 523148
[2025-07-24 07:56:25] -rw-r--r-- 2 boincer umatlas 305095210 Jul 24 06:28 ATLAS.root_0
[2025-07-24 07:56:25] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 06:28 start_atlas.sh
[2025-07-24 07:56:25] -rw-r--r-- 2 boincer umatlas    542873 Jul 24 06:28 input.tar.gz
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas 229194622 Jul 24 07:55 HITS.pool.root.1
[2025-07-24 07:56:25] -rw------- 1 boincer umatlas    839680 Jul 24 07:56 result.tar.gz
07:56:27 (15591): run_atlas exited; CPU time 38928.550671
07:56:27 (15591): called boinc_finish(0)

</stderr_txt>
]]>

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