Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:27:48 (18679): wrapper (7.7.26015): starting
06:27:48 (18679): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 06:27:48] Arguments: --nthreads 8
[2025-07-24 06:27:48] Threads: 8
[2025-07-24 06:27:48] Checking for CVMFS
[2025-07-24 06:27:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 06:27:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 06:27:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 06:27:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 06:27:48] 2.11.2.0 5073 41294 382148 148694 3 17 12884087 18432000 117 130560 0 98825620 99.442 139561951 66794 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 06:27:48] CVMFS is ok
[2025-07-24 06:27:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 06:27:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 06:27:48] Further information can be found at the LHC@home message board.
[2025-07-24 06:27:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 06:27:48] Checking for apptainer binary...
[2025-07-24 06:27:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 06:27:48] Running /usr/bin/apptainer --version
[2025-07-24 06:27:48] apptainer version 1.3.2-1.el7
[2025-07-24 06:27:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 06:27:48] c-211-39.aglt2.org
[2025-07-24 06:27:48] apptainer works
[2025-07-24 06:27:48] Set ATHENA_PROC_NUMBER=8
[2025-07-24 06:27:48] Set ATHENA_CORE_NUMBER=8
[2025-07-24 06:27:49] Starting ATLAS job with PandaID=6744531407
[2025-07-24 06:27:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 07:57:30]  *** The last 200 lines of the pilot log: ***
[2025-07-24 07:57:30]  protocol_id=None
[2025-07-24 07:57:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-24 07:57:30]  replicas=None
[2025-07-24 07:57:30]  scope=mc23_13p6TeV
[2025-07-24 07:57:30]  status=None
[2025-07-24 07:57:30]  status_code=0
[2025-07-24 07:57:30]  storage_token=
[2025-07-24 07:57:30]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6744531407/log.45668738._001235.job.log.tgz.1
[2025-07-24 07:57:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/e1/log.45668738._001235.job.log.tgz.1
[2025-07-24 07:57:30]  workdir=None
[2025-07-24 07:57:30] ]
[2025-07-24 07:57:30] 2025-07-24 11:56:55,431 | INFO     | transferring file log.45668738._001235.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6744531407/log.45668738._001235.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-24 07:57:30] 2025-07-24 11:56:55,431 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6744531407/log.45668738._001235.job.log.tgz.1 /tmp/boinchome/slots/1/log.45668738._001235.job
[2025-07-24 07:57:30] 2025-07-24 11:56:55,443 | INFO     | adding to output.list: log.45668738._001235.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/e1/log.45668738._001235.job.log.tg
[2025-07-24 07:57:30] 2025-07-24 11:56:55,444 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 07:57:30] 2025-07-24 11:56:55,444 | INFO     | summary of transferred files:
[2025-07-24 07:57:30] 2025-07-24 11:56:55,444 | INFO     |  -- lfn=log.45668738._001235.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 07:57:30] 2025-07-24 11:56:55,444 | INFO     | stage-out finished correctly
[2025-07-24 07:57:30] 2025-07-24 11:56:55,865 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 07:57:30] 2025-07-24 11:56:55,925 | INFO     | job 6744531407 has state=finished
[2025-07-24 07:57:30] 2025-07-24 11:56:55,926 | INFO     | preparing for final server update for job 6744531407 in state='finished'
[2025-07-24 07:57:30] 2025-07-24 11:56:55,926 | INFO     | this job has now completed (state=finished)
[2025-07-24 07:57:30] 2025-07-24 11:56:55,926 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 07:57:30] 2025-07-24 11:56:55,926 | INFO     | log transfer has been attempted: DONE
[2025-07-24 07:57:30] 2025-07-24 11:56:55,926 | INFO     | job 6744531407 has finished - writing final server update
[2025-07-24 07:57:30] 2025-07-24 11:56:55,926 | INFO     | total number of processed events: 400 (read)
[2025-07-24 07:57:30] 2025-07-24 11:56:55,927 | INFO     | executing command: lscpu
[2025-07-24 07:57:30] 2025-07-24 11:56:55,949 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 07:57:30] 2025-07-24 11:56:57,908 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 07:57:30] 2025-07-24 11:56:57,910 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2994.348999999997
[2025-07-24 07:57:30] 2025-07-24 11:56:57,916 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6744531407/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 07:57:30] 2025-07-24 11:56:57,917 | INFO     | extracted standard info from prmon json
[2025-07-24 07:57:30] 2025-07-24 11:56:57,917 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 07:57:30] 2025-07-24 11:56:57,917 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 07:57:30] 2025-07-24 11:56:57,917 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 07:57:30] 2025-07-24 11:56:57,917 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | fitting pss+swap vs Time
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | sum of square deviations: 164765880.0
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | sum of deviations: -92011973.00000006
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | mean x: 1753355640.0
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | mean y: 2512052.4320987654
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | -- intersect: 981657199.5164212
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | intersect: 981657199.5164212
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | chi2: 0.0018401402799433839
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | -- intersect: 981657199.5164212
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | current memory leak: -0.56 B/s (using 81 data points, chi2=0.00)
[2025-07-24 07:57:30] 2025-07-24 11:56:57,919 | INFO     | could have reported an average CPU frequency of 2994 MHz (6 samples)
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | ..............................
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . Timing measurements:
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . get job = 0 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . initial setup = 2 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . payload setup = 3 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . stage-in = 0 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . payload execution = 5322 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . stage-out = 0 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | . log creation = 0 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,920 | INFO     | ..............................
[2025-07-24 07:57:30] 2025-07-24 11:56:57,977 | INFO     | 
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | job summary report
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | --------------------------------------------------
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | PanDA job id: 6744531407
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | task id: 45668738
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | errors: (none)
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | pilot state: finished 
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | transexitcode: 0
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | exeerrorcode: 0
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | exeerrordiag: 
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | exitcode: 0
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | exitmsg: OK
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | cpuconsumptiontime: 39594 s
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | nevents: 400
[2025-07-24 07:57:30] 2025-07-24 11:56:57,978 | INFO     | neventsw: 0
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | pid: 43178
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | pgrp: 43178
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | corecount: 8
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | event service: False
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | sizes: {0: 2397223, 1: 2397422, 3: 2397684, 11: 2397712, 5327: 2433349, 5328: 2433349, 5330: 2433671}
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | --------------------------------------------------
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | 
[2025-07-24 07:57:30] 2025-07-24 11:56:57,979 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-24 07:57:30] 2025-07-24 11:56:57,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 07:57:30] 2025-07-24 11:56:57,993 | INFO     | job 6744531407 has completed (purged errors)
[2025-07-24 07:57:30] 2025-07-24 11:56:57,994 | INFO     | overall cleanup function is called
[2025-07-24 07:57:30] 2025-07-24 11:56:58,095 | INFO     | PID=23267 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 07:57:30] 2025-07-24 11:56:58,095 | INFO     | .. there are 2 such processes running
[2025-07-24 07:57:30] 2025-07-24 11:56:59,001 | INFO     | --- collectZombieJob: --- 10, [43178]
[2025-07-24 07:57:30] 2025-07-24 11:56:59,001 | INFO     | zombie collector waiting for pid 43178
[2025-07-24 07:57:30] 2025-07-24 11:56:59,001 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 07:57:30] 2025-07-24 11:56:59,001 | INFO     | collected zombie processes
[2025-07-24 07:57:30] 2025-07-24 11:56:59,001 | INFO     | will attempt to kill all subprocesses of pid=43178
[2025-07-24 07:57:30] 2025-07-24 11:56:59,089 | INFO     | process IDs to be killed: [43178] (in reverse order)
[2025-07-24 07:57:30] 2025-07-24 11:56:59,128 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 07:57:30] 2025-07-24 11:56:59,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 07:57:30] 2025-07-24 11:56:59,132 | INFO     | did not find any defunct processes belonging to 43178
[2025-07-24 07:57:30] 2025-07-24 11:56:59,134 | INFO     | did not find any defunct processes belonging to 43178
[2025-07-24 07:57:30] 2025-07-24 11:56:59,134 | INFO     | ready for new job
[2025-07-24 07:57:30] 2025-07-24 11:56:59,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 07:57:30] 2025-07-24 11:56:59,135 | INFO     | ***************************************
[2025-07-24 07:57:30] 2025-07-24 11:56:59,135 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 07:57:30] 2025-07-24 11:56:59,135 | INFO     | ***************************************
[2025-07-24 07:57:30] 2025-07-24 11:56:59,135 | INFO     | 
[2025-07-24 07:57:30] 2025-07-24 11:56:59,137 | INFO     | architecture information:
[2025-07-24 07:57:30] 2025-07-24 11:56:59,137 | INFO     | executing command: cat /etc/os-release
[2025-07-24 07:57:30] 2025-07-24 11:56:59,146 | INFO     | cat /etc/os-release:
[2025-07-24 07:57:30] NAME="CentOS Linux"
[2025-07-24 07:57:30] VERSION="7 (Core)"
[2025-07-24 07:57:30] ID="centos"
[2025-07-24 07:57:30] ID_LIKE="rhel fedora"
[2025-07-24 07:57:30] VERSION_ID="7"
[2025-07-24 07:57:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 07:57:30] ANSI_COLOR="0;31"
[2025-07-24 07:57:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 07:57:30] HOME_URL="https://www.centos.org/"
[2025-07-24 07:57:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 07:57:30] 
[2025-07-24 07:57:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 07:57:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 07:57:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 07:57:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 07:57:30] 
[2025-07-24 07:57:30] 2025-07-24 11:56:59,147 | INFO     | ***************************************
[2025-07-24 07:57:30] 2025-07-24 11:56:59,649 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-24 07:57:30] 2025-07-24 11:56:59,660 | INFO     | sufficient remaining disk space (73506226176 B)
[2025-07-24 07:57:30] 2025-07-24 11:56:59,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 07:57:30] 2025-07-24 11:56:59,660 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 07:57:30] 2025-07-24 11:56:59,661 | INFO     | update_server=False
[2025-07-24 07:57:30] 2025-07-24 11:56:59,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 07:57:30] 2025-07-24 11:56:59,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 07:57:30] 2025-07-24 11:56:59,891 | WARNING  | process 43178 can no longer be monitored (due to stat problems) - aborting
[2025-07-24 07:57:30] 2025-07-24 11:56:59,966 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 07:57:30] 2025-07-24 11:57:00,051 | INFO     | number of running child processes to parent process 43178: 1
[2025-07-24 07:57:30] 2025-07-24 11:57:00,051 | INFO     | maximum number of monitored processes: 6
[2025-07-24 07:57:30] 2025-07-24 11:57:00,051 | INFO     | aborting job monitoring since job object (job id=6744531407) has expired
[2025-07-24 07:57:30] 2025-07-24 11:57:00,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 07:57:30] 2025-07-24 11:57:00,051 | INFO     | will abort loop
[2025-07-24 07:57:30] 2025-07-24 11:57:00,091 | INFO     | all payload control threads have been joined
[2025-07-24 07:57:30] 2025-07-24 11:57:00,664 | INFO     | all job control threads have been joined
[2025-07-24 07:57:30] 2025-07-24 11:57:00,666 | INFO     | [job] retrieve thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:00,666 | INFO     | [job] queue monitor thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:00,687 | INFO     | [payload] validate_post thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:00,688 | INFO     | all data control threads have been joined
[2025-07-24 07:57:30] 2025-07-24 11:57:00,923 | INFO     | [payload] failed_post thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 07:57:30] 2025-07-24 11:57:01,057 | INFO     | [job] job monitor thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,096 | INFO     | [payload] control thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,397 | INFO     | [data] copytool_in thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,670 | INFO     | [job] control thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,693 | INFO     | [data] control thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,864 | INFO     | [job] validate thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,864 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:01,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 07:57:30] 2025-07-24 11:57:01,998 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:02,162 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:03,017 | INFO     | [data] copytool_out thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:05,937 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:10,171 | INFO     | job.realtimelogging is not enabled
[2025-07-24 07:57:30] 2025-07-24 11:57:11,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 07:57:30] 2025-07-24 11:57:13,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765881857856)>', '<ExcThread(monitor, started 139765449996032)>']
[2025-07-24 07:57:30] 2025-07-24 11:57:18,305 | INFO     | all workflow threads have been joined
[2025-07-24 07:57:30] 2025-07-24 11:57:18,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 07:57:30] 2025-07-24 11:57:18,306 | INFO     | traces error code: 0
[2025-07-24 07:57:30] 2025-07-24 11:57:18,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 07:57:30] 2025-07-24 11:57:29,152 | INFO     | 5345s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-24 07:57:30] 2025-07-24 11:57:30,264 | INFO     | PID=23267 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 07:57:30] 2025-07-24 11:57:30,265 | INFO     | .. there are 2 such processes running
[2025-07-24 07:57:30] 2025-07-24 11:57:30,265 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 07:57:30] 2025-07-24 11:57:30,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 07:57:30] 2025-07-24 11:57:30,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 07:57:30] 2025-07-24 11:57:30,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 07:57:30] 2025-07-24 11:57:30,265 | INFO     | [monitor] control thread has ended
[2025-07-24 07:57:30] 2025-07-24 11:57:30,335 [wrapper] ==== pilot stdout END ====
[2025-07-24 07:57:30] 2025-07-24 11:57:30,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 07:57:30] 2025-07-24 11:57:30,338 [wrapper] pilotpid: 23267
[2025-07-24 07:57:30] 2025-07-24 11:57:30,340 [wrapper] Pilot exit status: 0
[2025-07-24 07:57:30] 2025-07-24 11:57:30,345 [wrapper] pandaids: 6744531407
[2025-07-24 07:57:30] 2025-07-24 11:57:30,373 [wrapper] cleanup supervisor_pilot 27296 23268
[2025-07-24 07:57:30] 2025-07-24 11:57:30,374 [wrapper] Test setup, not cleaning
[2025-07-24 07:57:30] 2025-07-24 11:57:30,376 [wrapper] apfmon messages muted
[2025-07-24 07:57:30] 2025-07-24 11:57:30,377 [wrapper] ==== wrapper stdout END ====
[2025-07-24 07:57:30] 2025-07-24 11:57:30,379 [wrapper] ==== wrapper stderr END ====
[2025-07-24 07:57:30]  *** Error codes and diagnostics ***
[2025-07-24 07:57:30]     "exeErrorCode": 0,
[2025-07-24 07:57:30]     "exeErrorDiag": "",
[2025-07-24 07:57:30]     "pilotErrorCode": 0,
[2025-07-24 07:57:30]     "pilotErrorDiag": "",
[2025-07-24 07:57:30]  *** Listing of results directory ***
[2025-07-24 07:57:30] total 520684
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 05:42 pilot3.tar.gz
[2025-07-24 07:57:30] -rwx------ 1 boincer umatlas     36292 Jul 24 06:27 runpilot2-wrapper.sh
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 06:27 queuedata.json
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas       100 Jul 24 06:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 07:57:30] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 06:27 run_atlas
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas       105 Jul 24 06:27 job.xml
[2025-07-24 07:57:30] -rw-r--r-- 2 boincer umatlas 303694666 Jul 24 06:27 EVNT.45668735._000031.pool.root.1
[2025-07-24 07:57:30] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 06:27 start_atlas.sh
[2025-07-24 07:57:30] drwxrwx--x 2 boincer umatlas      4096 Jul 24 06:27 shared
[2025-07-24 07:57:30] -rw-r--r-- 2 boincer umatlas    542868 Jul 24 06:27 input.tar.gz
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas         0 Jul 24 06:27 boinc_lockfile
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas      2513 Jul 24 06:27 pandaJob.out
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas    978939 Jul 24 06:27 agis_schedconf.cvmfs.json
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas   1593041 Jul 24 06:27 agis_ddmendpoints.agis.ALL.json
[2025-07-24 07:57:30] drwx------ 4 boincer umatlas      4096 Jul 24 06:27 pilot3
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas      6338 Jul 24 07:55 init_data.xml
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas 223928495 Jul 24 07:56 HITS.45668738._001235.pool.root.1
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas      1031 Jul 24 07:56 memory_monitor_summary.json
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas    315759 Jul 24 07:56 log.45668738._001235.job.log.tgz.1
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas        27 Jul 24 07:56 wrapper_checkpoint.txt
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas        95 Jul 24 07:56 pilot_heartbeat.json
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas       529 Jul 24 07:56 boinc_task_state.xml
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas      7769 Jul 24 07:56 heartbeat.json
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas       935 Jul 24 07:57 pilotlog.txt
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 07:57 boinc_mmap_file
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas    522725 Jul 24 07:57 log.45668738._001235.job.log.1
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas       357 Jul 24 07:57 output.list
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas       620 Jul 24 07:57 runtime_log
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas    860160 Jul 24 07:57 result.tar.gz
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas       658 Jul 24 07:57 TkLLDmML8y7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfEMLDmqbGmln.diag
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas      8660 Jul 24 07:57 runtime_log.err
[2025-07-24 07:57:30] -rw-r--r-- 1 boincer umatlas     21843 Jul 24 07:57 stderr.txt
[2025-07-24 07:57:30] HITS file was successfully produced:
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas 223928495 Jul 24 07:56 shared/HITS.pool.root.1
[2025-07-24 07:57:30]  *** Contents of shared directory: ***
[2025-07-24 07:57:30] total 516660
[2025-07-24 07:57:30] -rw-r--r-- 2 boincer umatlas 303694666 Jul 24 06:27 ATLAS.root_0
[2025-07-24 07:57:30] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 06:27 start_atlas.sh
[2025-07-24 07:57:30] -rw-r--r-- 2 boincer umatlas    542868 Jul 24 06:27 input.tar.gz
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas 223928495 Jul 24 07:56 HITS.pool.root.1
[2025-07-24 07:57:30] -rw------- 1 boincer umatlas    860160 Jul 24 07:57 result.tar.gz
07:57:31 (18679): run_atlas exited; CPU time 39258.790835
07:57:31 (18679): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN