Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:24:43 (10988): wrapper (7.7.26015): starting
05:24:43 (10988): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 05:24:43] Arguments: --nthreads 12
[2025-07-24 05:24:43] Threads: 12
[2025-07-24 05:24:43] Checking for CVMFS
[2025-07-24 05:24:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 05:24:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 05:24:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 05:24:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 05:24:43] 2.11.2.0 3255 107453 97764 148689 1 10 19225357 20275200 1 130560 0 35969211 99.972 8976784 10330 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 05:24:43] CVMFS is ok
[2025-07-24 05:24:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 05:24:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 05:24:43] Further information can be found at the LHC@home message board.
[2025-07-24 05:24:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 05:24:43] Checking for apptainer binary...
[2025-07-24 05:24:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 05:24:43] Running /usr/bin/apptainer --version
[2025-07-24 05:24:43] apptainer version 1.3.2-1.el7
[2025-07-24 05:24:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 05:24:45] c-115-41.aglt2.org
[2025-07-24 05:24:45] apptainer works
[2025-07-24 05:24:45] Set ATHENA_PROC_NUMBER=12
[2025-07-24 05:24:45] Set ATHENA_CORE_NUMBER=12
[2025-07-24 05:24:45] Starting ATLAS job with PandaID=6741741834
[2025-07-24 05:24:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 06:58:24]  *** The last 200 lines of the pilot log: ***
[2025-07-24 06:58:24]  protocol_id=None
[2025-07-24 06:58:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-24 06:58:24]  replicas=None
[2025-07-24 06:58:24]  scope=mc23_13p6TeV
[2025-07-24 06:58:24]  status=None
[2025-07-24 06:58:24]  status_code=0
[2025-07-24 06:58:24]  storage_token=
[2025-07-24 06:58:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6741741834/log.45697453._005572.job.log.tgz.1
[2025-07-24 06:58:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/69/log.45697453._005572.job.log.tgz.1
[2025-07-24 06:58:24]  workdir=None
[2025-07-24 06:58:24] ]
[2025-07-24 06:58:24] 2025-07-24 10:57:44,904 | INFO     | transferring file log.45697453._005572.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6741741834/log.45697453._005572.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-24 06:58:24] 2025-07-24 10:57:44,904 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6741741834/log.45697453._005572.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697453._005572.job
[2025-07-24 06:58:24] 2025-07-24 10:57:44,925 | INFO     | adding to output.list: log.45697453._005572.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/69/log.45697453._005572.job.log.tg
[2025-07-24 06:58:24] 2025-07-24 10:57:44,926 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 06:58:24] 2025-07-24 10:57:44,927 | INFO     | summary of transferred files:
[2025-07-24 06:58:24] 2025-07-24 10:57:44,927 | INFO     |  -- lfn=log.45697453._005572.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 06:58:24] 2025-07-24 10:57:44,927 | INFO     | stage-out finished correctly
[2025-07-24 06:58:24] 2025-07-24 10:57:45,599 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 06:58:24] 2025-07-24 10:57:46,606 | INFO     | monitor loop #417: job 0:6741741834 is in state 'finished'
[2025-07-24 06:58:24] 2025-07-24 10:57:46,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 06:58:24] 2025-07-24 10:57:47,288 | INFO     | job 6741741834 has state=finished
[2025-07-24 06:58:24] 2025-07-24 10:57:47,288 | INFO     | preparing for final server update for job 6741741834 in state='finished'
[2025-07-24 06:58:24] 2025-07-24 10:57:47,289 | INFO     | this job has now completed (state=finished)
[2025-07-24 06:58:24] 2025-07-24 10:57:47,289 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 06:58:24] 2025-07-24 10:57:47,289 | INFO     | log transfer has been attempted: DONE
[2025-07-24 06:58:24] 2025-07-24 10:57:47,289 | INFO     | job 6741741834 has finished - writing final server update
[2025-07-24 06:58:24] 2025-07-24 10:57:47,289 | INFO     | total number of processed events: 400 (read)
[2025-07-24 06:58:24] 2025-07-24 10:57:47,290 | INFO     | executing command: lscpu
[2025-07-24 06:58:24] 2025-07-24 10:57:47,316 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 06:58:24] 2025-07-24 10:57:48,125 | INFO     | PID=14721 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 06:58:24] 2025-07-24 10:57:49,110 | INFO     | monitor loop #418: job 0:6741741834 is in state 'finished'
[2025-07-24 06:58:24] 2025-07-24 10:57:49,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 06:58:24] 2025-07-24 10:57:51,613 | INFO     | monitor loop #419: job 0:6741741834 is in state 'finished'
[2025-07-24 06:58:24] 2025-07-24 10:57:51,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 06:58:24] 2025-07-24 10:57:51,888 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-24 06:58:24] 2025-07-24 10:57:51,892 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-07-24 06:58:24] 2025-07-24 10:57:51,894 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741741834/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 06:58:24] 2025-07-24 10:57:51,894 | INFO     | extracted standard info from prmon json
[2025-07-24 06:58:24] 2025-07-24 10:57:51,895 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 06:58:24] 2025-07-24 10:57:51,895 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 06:58:24] 2025-07-24 10:57:51,895 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 06:58:24] 2025-07-24 10:57:51,895 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 06:58:24] 2025-07-24 10:57:51,897 | INFO     | fitting pss+swap vs Time
[2025-07-24 06:58:24] 2025-07-24 10:57:51,897 | INFO     | sum of square deviations: 183761585.0
[2025-07-24 06:58:24] 2025-07-24 10:57:51,897 | INFO     | sum of deviations: -9985555948.5
[2025-07-24 06:58:24] 2025-07-24 10:57:51,897 | INFO     | mean x: 1753351965.5
[2025-07-24 06:58:24] 2025-07-24 10:57:51,898 | INFO     | mean y: 2852344.535714286
[2025-07-24 06:58:24] 2025-07-24 10:57:51,898 | INFO     | -- intersect: 95279534622.35071
[2025-07-24 06:58:24] 2025-07-24 10:57:51,898 | INFO     | intersect: 95279534622.35071
[2025-07-24 06:58:24] 2025-07-24 10:57:51,898 | INFO     | chi2: 0.10741065065640164
[2025-07-24 06:58:24] 2025-07-24 10:57:51,898 | INFO     | -- intersect: 95279534622.35071
[2025-07-24 06:58:24] 2025-07-24 10:57:51,898 | INFO     | current memory leak: -54.34 B/s (using 84 data points, chi2=0.11)
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | could have reported an average CPU frequency of 2117 MHz (7 samples)
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | ..............................
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . Timing measurements:
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . get job = 0 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . initial setup = 2 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . payload setup = 9 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . stage-in = 0 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . payload execution = 5536 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,899 | INFO     | . stage-out = 0 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,900 | INFO     | . log creation = 0 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,900 | INFO     | ..............................
[2025-07-24 06:58:24] 2025-07-24 10:57:51,979 | INFO     | 
[2025-07-24 06:58:24] 2025-07-24 10:57:51,979 | INFO     | job summary report
[2025-07-24 06:58:24] 2025-07-24 10:57:51,979 | INFO     | --------------------------------------------------
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | PanDA job id: 6741741834
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | task id: 45697453
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | errors: (none)
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | pilot state: finished 
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | transexitcode: 0
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | exeerrorcode: 0
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | exeerrordiag: 
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | exitcode: 0
[2025-07-24 06:58:24] 2025-07-24 10:57:51,980 | INFO     | exitmsg: OK
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | cpuconsumptiontime: 59359 s
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | nevents: 400
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | neventsw: 0
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | pid: 21286
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | pgrp: 21286
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | corecount: 12
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | event service: False
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | sizes: {0: 2397551, 1: 2397551, 5: 2397841, 11: 2397897, 5549: 2424558, 5550: 2433556, 5551: 2433740, 5557: 2433934}
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | --------------------------------------------------
[2025-07-24 06:58:24] 2025-07-24 10:57:51,981 | INFO     | 
[2025-07-24 06:58:24] 2025-07-24 10:57:51,982 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-24 06:58:24] 2025-07-24 10:57:52,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,011 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 06:58:24] 2025-07-24 10:57:52,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,012 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 06:58:24] 2025-07-24 10:57:52,012 | INFO     | job 6741741834 has completed (purged errors)
[2025-07-24 06:58:24] 2025-07-24 10:57:52,012 | INFO     | overall cleanup function is called
[2025-07-24 06:58:24] 2025-07-24 10:57:53,020 | INFO     | --- collectZombieJob: --- 10, [21286]
[2025-07-24 06:58:24] 2025-07-24 10:57:53,020 | INFO     | zombie collector waiting for pid 21286
[2025-07-24 06:58:24] 2025-07-24 10:57:53,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 06:58:24] 2025-07-24 10:57:53,029 | INFO     | collected zombie processes
[2025-07-24 06:58:24] 2025-07-24 10:57:53,029 | INFO     | will attempt to kill all subprocesses of pid=21286
[2025-07-24 06:58:24] 2025-07-24 10:57:53,118 | INFO     | process IDs to be killed: [21286] (in reverse order)
[2025-07-24 06:58:24] 2025-07-24 10:57:53,167 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 06:58:24] 2025-07-24 10:57:53,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 06:58:24] 2025-07-24 10:57:53,171 | INFO     | did not find any defunct processes belonging to 21286
[2025-07-24 06:58:24] 2025-07-24 10:57:53,174 | INFO     | did not find any defunct processes belonging to 21286
[2025-07-24 06:58:24] 2025-07-24 10:57:53,174 | INFO     | ready for new job
[2025-07-24 06:58:24] 2025-07-24 10:57:53,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 06:58:24] 2025-07-24 10:57:53,175 | INFO     | ***************************************
[2025-07-24 06:58:24] 2025-07-24 10:57:53,175 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 06:58:24] 2025-07-24 10:57:53,175 | INFO     | ***************************************
[2025-07-24 06:58:24] 2025-07-24 10:57:53,176 | INFO     | 
[2025-07-24 06:58:24] 2025-07-24 10:57:53,176 | INFO     | architecture information:
[2025-07-24 06:58:24] 2025-07-24 10:57:53,176 | INFO     | executing command: cat /etc/os-release
[2025-07-24 06:58:24] 2025-07-24 10:57:53,191 | INFO     | cat /etc/os-release:
[2025-07-24 06:58:24] NAME="CentOS Linux"
[2025-07-24 06:58:24] VERSION="7 (Core)"
[2025-07-24 06:58:24] ID="centos"
[2025-07-24 06:58:24] ID_LIKE="rhel fedora"
[2025-07-24 06:58:24] VERSION_ID="7"
[2025-07-24 06:58:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 06:58:24] ANSI_COLOR="0;31"
[2025-07-24 06:58:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 06:58:24] HOME_URL="https://www.centos.org/"
[2025-07-24 06:58:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 06:58:24] 
[2025-07-24 06:58:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 06:58:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 06:58:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 06:58:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 06:58:24] 
[2025-07-24 06:58:24] 2025-07-24 10:57:53,191 | INFO     | ***************************************
[2025-07-24 06:58:24] 2025-07-24 10:57:53,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-24 06:58:24] 2025-07-24 10:57:53,710 | INFO     | sufficient remaining disk space (18344837120 B)
[2025-07-24 06:58:24] 2025-07-24 10:57:53,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 06:58:24] 2025-07-24 10:57:53,710 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 06:58:24] 2025-07-24 10:57:53,710 | INFO     | update_server=False
[2025-07-24 06:58:24] 2025-07-24 10:57:53,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 06:58:24] 2025-07-24 10:57:53,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 06:58:24] 2025-07-24 10:57:53,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 06:58:24] 2025-07-24 10:57:54,103 | INFO     | all data control threads have been joined
[2025-07-24 06:58:24] 2025-07-24 10:57:54,117 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-24 06:58:24] 2025-07-24 10:57:54,117 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-24 06:58:24] 2025-07-24 10:57:54,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 06:58:24] 2025-07-24 10:57:54,117 | INFO     | will abort loop
[2025-07-24 06:58:24] 2025-07-24 10:57:54,509 | INFO     | all payload control threads have been joined
[2025-07-24 06:58:24] 2025-07-24 10:57:54,716 | INFO     | [job] retrieve thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:54,717 | INFO     | [job] queue monitor thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:54,759 | INFO     | [payload] validate_post thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,094 | INFO     | all job control threads have been joined
[2025-07-24 06:58:24] 2025-07-24 10:57:55,109 | INFO     | [data] control thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,123 | INFO     | [job] job monitor thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,189 | INFO     | [data] copytool_in thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,480 | INFO     | [payload] failed_post thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,515 | INFO     | [payload] control thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,577 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,717 | INFO     | [data] copytool_out thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,930 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:55,976 | INFO     | [job] validate thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:56,081 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:56,100 | INFO     | [job] control thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:57:56,183 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 06:58:24] 2025-07-24 10:58:00,188 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:58:04,004 | INFO     | job.realtimelogging is not enabled
[2025-07-24 06:58:24] 2025-07-24 10:58:05,010 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 06:58:24] 2025-07-24 10:58:05,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627977070400)>', '<ExcThread(monitor, started 140626993592064)>']
[2025-07-24 06:58:24] 2025-07-24 10:58:10,148 | INFO     | all workflow threads have been joined
[2025-07-24 06:58:24] 2025-07-24 10:58:10,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 06:58:24] 2025-07-24 10:58:10,149 | INFO     | traces error code: 0
[2025-07-24 06:58:24] 2025-07-24 10:58:10,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 06:58:24] 2025-07-24 10:58:24,316 | INFO     | PID=14721 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 06:58:24] 2025-07-24 10:58:24,317 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 06:58:24] 2025-07-24 10:58:24,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 06:58:24] 2025-07-24 10:58:24,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 06:58:24] 2025-07-24 10:58:24,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 06:58:24] 2025-07-24 10:58:24,317 | INFO     | [monitor] control thread has ended
[2025-07-24 06:58:24] 2025-07-24 10:58:24,412 [wrapper] ==== pilot stdout END ====
[2025-07-24 06:58:24] 2025-07-24 10:58:24,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 06:58:24] 2025-07-24 10:58:24,420 [wrapper] pilotpid: 14721
[2025-07-24 06:58:24] 2025-07-24 10:58:24,424 [wrapper] Pilot exit status: 0
[2025-07-24 06:58:24] 2025-07-24 10:58:24,440 [wrapper] pandaids: 6741741834
[2025-07-24 06:58:24] 2025-07-24 10:58:24,480 [wrapper] cleanup supervisor_pilot 31338 14722
[2025-07-24 06:58:24] 2025-07-24 10:58:24,484 [wrapper] Test setup, not cleaning
[2025-07-24 06:58:24] 2025-07-24 10:58:24,488 [wrapper] apfmon messages muted
[2025-07-24 06:58:24] 2025-07-24 10:58:24,491 [wrapper] ==== wrapper stdout END ====
[2025-07-24 06:58:24] 2025-07-24 10:58:24,495 [wrapper] ==== wrapper stderr END ====
[2025-07-24 06:58:24]  *** Error codes and diagnostics ***
[2025-07-24 06:58:24]     "exeErrorCode": 0,
[2025-07-24 06:58:24]     "exeErrorDiag": "",
[2025-07-24 06:58:24]     "pilotErrorCode": 0,
[2025-07-24 06:58:24]     "pilotErrorDiag": "",
[2025-07-24 06:58:24]  *** Listing of results directory ***
[2025-07-24 06:58:24] total 569228
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas    530466 Jul 22 01:08 pilot3.tar.gz
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas      5112 Jul 22 01:09 queuedata.json
[2025-07-24 06:58:24] -rwx------ 1 boincer umatlas     36292 Jul 22 01:10 runpilot2-wrapper.sh
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas       100 Jul 24 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 06:58:24] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 05:24 run_atlas
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas       105 Jul 24 05:24 job.xml
[2025-07-24 06:58:24] -rw-r--r-- 2 boincer umatlas 316887296 Jul 24 05:24 EVNT.45697451._000223.pool.root.1
[2025-07-24 06:58:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 05:24 start_atlas.sh
[2025-07-24 06:58:24] drwxrwx--x 2 boincer umatlas      4096 Jul 24 05:24 shared
[2025-07-24 06:58:24] -rw-r--r-- 2 boincer umatlas    542899 Jul 24 05:24 input.tar.gz
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas         0 Jul 24 05:24 boinc_lockfile
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas      2633 Jul 24 05:24 pandaJob.out
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas    978947 Jul 24 05:24 agis_schedconf.cvmfs.json
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas   1593041 Jul 24 05:24 agis_ddmendpoints.agis.ALL.json
[2025-07-24 06:58:24] drwx------ 4 boincer umatlas      4096 Jul 24 05:24 pilot3
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas 260303383 Jul 24 06:57 HITS.45697453._005572.pool.root.1
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas       530 Jul 24 06:57 boinc_task_state.xml
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas      5869 Jul 24 06:57 init_data.xml
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas      1058 Jul 24 06:57 memory_monitor_summary.json
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas    384258 Jul 24 06:57 log.45697453._005572.job.log.tgz.1
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas      7844 Jul 24 06:57 heartbeat.json
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 06:57 boinc_mmap_file
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas        27 Jul 24 06:57 wrapper_checkpoint.txt
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas       745 Jul 24 06:58 pilotlog.txt
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas        95 Jul 24 06:58 pilot_heartbeat.json
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas    527691 Jul 24 06:58 log.45697453._005572.job.log.1
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas       357 Jul 24 06:58 output.list
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas       620 Jul 24 06:58 runtime_log
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas    931840 Jul 24 06:58 result.tar.gz
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas       660 Jul 24 06:58 ubyMDmaRKy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNWILDmLqG5Im.diag
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas      8662 Jul 24 06:58 runtime_log.err
[2025-07-24 06:58:24] -rw-r--r-- 1 boincer umatlas     21882 Jul 24 06:58 stderr.txt
[2025-07-24 06:58:24] HITS file was successfully produced:
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas 260303383 Jul 24 06:57 shared/HITS.pool.root.1
[2025-07-24 06:58:24]  *** Contents of shared directory: ***
[2025-07-24 06:58:24] total 565132
[2025-07-24 06:58:24] -rw-r--r-- 2 boincer umatlas 316887296 Jul 24 05:24 ATLAS.root_0
[2025-07-24 06:58:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 05:24 start_atlas.sh
[2025-07-24 06:58:24] -rw-r--r-- 2 boincer umatlas    542899 Jul 24 05:24 input.tar.gz
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas 260303383 Jul 24 06:57 HITS.pool.root.1
[2025-07-24 06:58:24] -rw------- 1 boincer umatlas    931840 Jul 24 06:58 result.tar.gz
06:58:26 (10988): run_atlas exited; CPU time 59361.853201
06:58:26 (10988): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN