Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:42:34 (1161779): wrapper (7.7.26015): starting
15:42:34 (1161779): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 15:42:34] Arguments: --nthreads 12
[2025-07-24 15:42:34] Threads: 12
[2025-07-24 15:42:34] Checking for CVMFS
[2025-07-24 15:42:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 15:42:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 15:42:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 15:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 15:42:34] 2.13.1.0 4205 28624 187364 148703 2 188 25524129 46080001 6454 130560 0 231719684 99.917 55975920 24090 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-24 15:42:34] CVMFS is ok
[2025-07-24 15:42:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 15:42:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 15:42:34] Further information can be found at the LHC@home message board.
[2025-07-24 15:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 15:42:34] Checking for apptainer binary...
[2025-07-24 15:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 15:42:34] Running /usr/bin/apptainer --version
[2025-07-24 15:42:34] apptainer version 1.4.1-1.el9
[2025-07-24 15:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 15:42:34] mff2104.farm.particle.cz
[2025-07-24 15:42:34] apptainer works
[2025-07-24 15:42:34] Set ATHENA_PROC_NUMBER=12
[2025-07-24 15:42:34] Set ATHENA_CORE_NUMBER=12
[2025-07-24 15:42:34] Starting ATLAS job with PandaID=6744422997
[2025-07-24 15:42:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:50:21 (98620): wrapper (7.7.26015): starting
16:50:21 (98620): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 16:50:21] Arguments: --nthreads 12
[2025-07-24 16:50:21] Threads: 12
[2025-07-24 16:50:21] This job has been restarted, cleaning up previous attempt
[2025-07-24 16:50:21] Checking for CVMFS
[2025-07-24 16:50:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 16:50:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 16:50:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 16:50:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 16:50:22] 2.13.1.0 4095 4 39032 148705 3 27 25535478 46080000 1152 130560 0 22669 99.982 8 62 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-24 16:50:22] CVMFS is ok
[2025-07-24 16:50:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 16:50:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 16:50:22] Further information can be found at the LHC@home message board.
[2025-07-24 16:50:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 16:50:22] Checking for apptainer binary...
[2025-07-24 16:50:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 16:50:22] Running /usr/bin/apptainer --version
[2025-07-24 16:50:22] apptainer version 1.4.1-1.el9
[2025-07-24 16:50:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 16:50:22] mff2104.farm.particle.cz
[2025-07-24 16:50:22] apptainer works
[2025-07-24 16:50:22] Set ATHENA_PROC_NUMBER=12
[2025-07-24 16:50:22] Set ATHENA_CORE_NUMBER=12
[2025-07-24 16:50:22] Starting ATLAS job with PandaID=6744422997
[2025-07-24 16:50:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 21:07:42]  *** The last 200 lines of the pilot log: ***
[2025-07-24 21:07:42] 2025-07-24 17:06:53,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 21:07:42] 2025-07-24 17:06:53,172 | INFO     | fitting pss+swap vs Time
[2025-07-24 21:07:42] 2025-07-24 17:06:53,173 | INFO     | sum of square deviations: 746051197.5
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | sum of deviations: 13441807378.000002
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | mean x: 1753372713.5
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | mean y: 2667776.4925373136
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | -- intersect: -31588325382.804928
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | intersect: -31588325382.804928
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | chi2: 2.458378637902701
[2025-07-24 21:07:42] 2025-07-24 17:06:53,174 | INFO     | sum of square deviations: 665612480.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,175 | INFO     | sum of deviations: 22620446695.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,175 | INFO     | mean x: 1753372561.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,175 | INFO     | mean y: 2684604.201550388
[2025-07-24 21:07:42] 2025-07-24 17:06:53,175 | INFO     | -- intersect: -59584645477.975
[2025-07-24 21:07:42] 2025-07-24 17:06:53,176 | INFO     | intersect: -59584645477.975
[2025-07-24 21:07:42] 2025-07-24 17:06:53,176 | INFO     | chi2: 1.6272244526601165
[2025-07-24 21:07:42] 2025-07-24 17:06:53,176 | INFO     | current chi2=1.6272244526601165 (change=33.80903870657049 %)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,176 | INFO     | sum of square deviations: 591173875.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,177 | INFO     | sum of deviations: 21626112352.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,177 | INFO     | mean x: 1753372408.5
[2025-07-24 21:07:42] 2025-07-24 17:06:53,177 | INFO     | mean y: 2682566.14516129
[2025-07-24 21:07:42] 2025-07-24 17:06:53,177 | INFO     | -- intersect: -64138563021.06527
[2025-07-24 21:07:42] 2025-07-24 17:06:53,177 | INFO     | intersect: -64138563021.06527
[2025-07-24 21:07:42] 2025-07-24 17:06:53,177 | INFO     | chi2: 1.629504463875201
[2025-07-24 21:07:42] 2025-07-24 17:06:53,178 | INFO     | current chi2=1.629504463875201 (change=-0.14011657773192948 %)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,178 | INFO     | right removable region: 123
[2025-07-24 21:07:42] 2025-07-24 17:06:53,178 | INFO     | sum of square deviations: 665612480.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | sum of deviations: -10580284263.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | mean x: 1753372866.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | mean y: 2712605.5426356588
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | -- intersect: 27873559229.859245
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | intersect: 27873559229.859245
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | chi2: 0.8720107774293202
[2025-07-24 21:07:42] 2025-07-24 17:06:53,179 | INFO     | current chi2=0.8720107774293202 (change=64.52902884914211 %)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,180 | INFO     | sum of square deviations: 591173875.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,180 | INFO     | sum of deviations: -10558872866.5
[2025-07-24 21:07:42] 2025-07-24 17:06:53,180 | INFO     | mean x: 1753373018.5
[2025-07-24 21:07:42] 2025-07-24 17:06:53,180 | INFO     | mean y: 2712543.556451613
[2025-07-24 21:07:42] 2025-07-24 17:06:53,181 | INFO     | -- intersect: 31319459735.56126
[2025-07-24 21:07:42] 2025-07-24 17:06:53,181 | INFO     | intersect: 31319459735.56126
[2025-07-24 21:07:42] 2025-07-24 17:06:53,181 | INFO     | chi2: 0.8721538498375899
[2025-07-24 21:07:42] 2025-07-24 17:06:53,181 | INFO     | current chi2=0.8721538498375899 (change=-0.016407183485907573 %)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,181 | INFO     | left removable region: 20
[2025-07-24 21:07:42] 2025-07-24 17:06:53,181 | INFO     | sum of square deviations: 338804492.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | sum of deviations: -239818450.00000003
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | mean x: 1753372988.0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | mean y: 2729634.825242718
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | -- intersect: 1243832401.1192288
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | intersect: 1243832401.1192288
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | chi2: 0.00196509717371176
[2025-07-24 21:07:42] 2025-07-24 17:06:53,182 | INFO     | -- intersect: 1243832401.1192288
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | current memory leak: -0.71 B/s (using 103 data points, chi2=0.00)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | could have reported an average CPU frequency of 2714 MHz (8 samples)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | ..............................
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | . Timing measurements:
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | . get job = 0 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | . initial setup = 0 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,183 | INFO     | . payload setup = 6 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,184 | INFO     | . stage-in = 0 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,184 | INFO     | . payload execution = 8145 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,184 | INFO     | . stage-out = 1 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,184 | INFO     | . log creation = 0 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,184 | INFO     | ..............................
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | 
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | job summary report
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | --------------------------------------------------
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | PanDA job id: 6744422997
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | task id: 45668900
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | errors: (none)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | pilot state: finished 
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | transexitcode: 0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | exeerrorcode: 0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,291 | INFO     | exeerrordiag: 
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | exitcode: 0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | exitmsg: OK
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | cpuconsumptiontime: 57707 s
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | nevents: 400
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | neventsw: 0
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | pid: 178866
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | pgrp: 178866
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | corecount: 12
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | event service: False
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | sizes: {0: 2397263, 1: 2397462, 5: 2397724, 11: 2397780, 8155: 2425911, 8158: 2435099, 8167: 2435237}
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | --------------------------------------------------
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | 
[2025-07-24 21:07:42] 2025-07-24 17:06:53,292 | INFO     | executing command: ls -lF /scratch/.boinc/slots/2
[2025-07-24 21:07:42] 2025-07-24 17:06:53,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,328 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,329 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 21:07:42] 2025-07-24 17:06:53,329 | INFO     | job 6744422997 has completed (purged errors)
[2025-07-24 21:07:42] 2025-07-24 17:06:53,329 | INFO     | overall cleanup function is called
[2025-07-24 21:07:42] 2025-07-24 17:06:54,339 | INFO     | --- collectZombieJob: --- 10, [178866]
[2025-07-24 21:07:42] 2025-07-24 17:06:54,339 | INFO     | zombie collector waiting for pid 178866
[2025-07-24 21:07:42] 2025-07-24 17:06:54,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 21:07:42] 2025-07-24 17:06:54,340 | INFO     | collected zombie processes
[2025-07-24 21:07:42] 2025-07-24 17:06:54,340 | INFO     | will attempt to kill all subprocesses of pid=178866
[2025-07-24 21:07:42] 2025-07-24 17:06:54,732 | INFO     | process IDs to be killed: [178866] (in reverse order)
[2025-07-24 21:07:42] 2025-07-24 17:06:54,873 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 21:07:42] 2025-07-24 17:06:54,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 21:07:42] 2025-07-24 17:06:54,889 | INFO     | did not find any defunct processes belonging to 178866
[2025-07-24 21:07:42] 2025-07-24 17:06:54,908 | INFO     | did not find any defunct processes belonging to 178866
[2025-07-24 21:07:42] 2025-07-24 17:06:54,908 | INFO     | ready for new job
[2025-07-24 21:07:42] 2025-07-24 17:06:54,908 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 21:07:42] 2025-07-24 17:06:54,910 | INFO     | ***************************************
[2025-07-24 21:07:42] 2025-07-24 17:06:54,910 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 21:07:42] 2025-07-24 17:06:54,910 | INFO     | ***************************************
[2025-07-24 21:07:42] 2025-07-24 17:06:54,910 | INFO     | 
[2025-07-24 21:07:42] 2025-07-24 17:06:54,916 | INFO     | architecture information:
[2025-07-24 21:07:42] 2025-07-24 17:06:54,916 | INFO     | executing command: cat /etc/os-release
[2025-07-24 21:07:42] 2025-07-24 17:06:54,940 | INFO     | cat /etc/os-release:
[2025-07-24 21:07:42] NAME="CentOS Linux"
[2025-07-24 21:07:42] VERSION="7 (Core)"
[2025-07-24 21:07:42] ID="centos"
[2025-07-24 21:07:42] ID_LIKE="rhel fedora"
[2025-07-24 21:07:42] VERSION_ID="7"
[2025-07-24 21:07:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 21:07:42] ANSI_COLOR="0;31"
[2025-07-24 21:07:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 21:07:42] HOME_URL="https://www.centos.org/"
[2025-07-24 21:07:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 21:07:42] 
[2025-07-24 21:07:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 21:07:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 21:07:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 21:07:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 21:07:42] 
[2025-07-24 21:07:42] 2025-07-24 17:06:54,941 | INFO     | ***************************************
[2025-07-24 21:07:42] 2025-07-24 17:06:55,444 | INFO     | executing command: df -mP /scratch/.boinc/slots/2
[2025-07-24 21:07:42] 2025-07-24 17:06:55,485 | INFO     | sufficient remaining disk space (1566112219136 B)
[2025-07-24 21:07:42] 2025-07-24 17:06:55,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 21:07:42] 2025-07-24 17:06:55,485 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 21:07:42] 2025-07-24 17:06:55,485 | INFO     | update_server=False
[2025-07-24 21:07:42] 2025-07-24 17:06:55,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 21:07:42] 2025-07-24 17:06:55,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 21:07:42] 2025-07-24 17:06:55,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 21:07:42] 2025-07-24 17:06:55,547 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-24 21:07:42] 2025-07-24 17:06:55,547 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-24 21:07:42] 2025-07-24 17:06:55,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 21:07:42] 2025-07-24 17:06:55,547 | INFO     | will abort loop
[2025-07-24 21:07:42] 2025-07-24 17:06:56,047 | INFO     | all data control threads have been joined
[2025-07-24 21:07:42] 2025-07-24 17:06:56,166 | INFO     | all job control threads have been joined
[2025-07-24 21:07:42] 2025-07-24 17:06:56,491 | INFO     | [job] retrieve thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:56,552 | INFO     | [job] job monitor thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:56,709 | INFO     | [job] validate thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:56,767 | INFO     | all payload control threads have been joined
[2025-07-24 21:07:42] 2025-07-24 17:06:56,798 | INFO     | [payload] failed_post thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:56,809 | INFO     | [data] copytool_in thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:56,959 | INFO     | [payload] validate_post thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,053 | INFO     | [data] control thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,173 | INFO     | [job] control thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,297 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,479 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,493 | INFO     | [data] copytool_out thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,551 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:57,772 | INFO     | [payload] control thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:58,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 21:07:42] 2025-07-24 17:06:59,308 | INFO     | [job] queue monitor thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:06:59,493 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:07:06,045 | INFO     | job.realtimelogging is not enabled
[2025-07-24 21:07:42] 2025-07-24 17:07:07,053 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 21:07:42] 2025-07-24 17:07:07,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323265996608)>', '<ExcThread(monitor, started 140322906543872)>']
[2025-07-24 21:07:42] 2025-07-24 17:07:12,561 | INFO     | all workflow threads have been joined
[2025-07-24 21:07:42] 2025-07-24 17:07:12,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 21:07:42] 2025-07-24 17:07:12,561 | INFO     | traces error code: 0
[2025-07-24 21:07:42] 2025-07-24 17:07:12,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 21:07:42] 2025-07-24 17:07:24,875 | INFO     | PID=131290 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-24 21:07:42] 2025-07-24 17:07:24,876 | INFO     | .. there are 15 such processes running
[2025-07-24 21:07:42] 2025-07-24 17:07:24,876 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 21:07:42] 2025-07-24 17:07:24,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 21:07:42] 2025-07-24 17:07:24,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 21:07:42] 2025-07-24 17:07:24,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 21:07:42] 2025-07-24 17:07:24,876 | INFO     | [monitor] control thread has ended
[2025-07-24 21:07:42] 2025-07-24 17:07:25,108 [wrapper] ==== pilot stdout END ====
[2025-07-24 21:07:42] 2025-07-24 17:07:25,113 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 21:07:42] 2025-07-24 17:07:25,118 [wrapper] pilotpid: 131290
[2025-07-24 21:07:42] 2025-07-24 17:07:25,126 [wrapper] Pilot exit status: 0
[2025-07-24 21:07:42] 2025-07-24 17:07:25,156 [wrapper] pandaids: 6744422997 6744422997
[2025-07-24 21:07:42] 2025-07-24 17:07:25,257 [wrapper] cleanup supervisor_pilot  487577 131295
[2025-07-24 21:07:42] 2025-07-24 17:07:25,261 [wrapper] Test setup, not cleaning
[2025-07-24 21:07:42] 2025-07-24 17:07:25,267 [wrapper] apfmon messages muted
[2025-07-24 21:07:42] 2025-07-24 17:07:25,272 [wrapper] ==== wrapper stdout END ====
[2025-07-24 21:07:42] 2025-07-24 17:07:25,283 [wrapper] ==== wrapper stderr END ====
[2025-07-24 21:07:42]  *** Error codes and diagnostics ***
[2025-07-24 21:07:42]     "exeErrorCode": 0,
[2025-07-24 21:07:42]     "exeErrorDiag": "",
[2025-07-24 21:07:42]     "pilotErrorCode": 0,
[2025-07-24 21:07:42]     "pilotErrorDiag": "",
[2025-07-24 21:07:42]  *** Listing of results directory ***
[2025-07-24 21:07:42] total 741816
[2025-07-24 21:07:42] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-24 21:07:42] -rwx------ 1 boinc boinc     36292 Jul 24 09:47 runpilot2-wrapper.sh
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc    530466 Jul 24 09:47 pilot3.tar.gz
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc      5112 Jul 24 09:47 queuedata.json
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc       100 Jul 24 15:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 21:07:42] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 15:42 run_atlas
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc       105 Jul 24 15:42 job.xml
[2025-07-24 21:07:42] -rw-r--r-- 3 boinc boinc 278033377 Jul 24 15:42 EVNT.45668898._000031.pool.root.1
[2025-07-24 21:07:42] -rw-r--r-- 3 boinc boinc 278033377 Jul 24 15:42 ATLAS.root_0
[2025-07-24 21:07:42] -rw-r--r-- 2 boinc boinc     15095 Jul 24 15:42 start_atlas.sh
[2025-07-24 21:07:42] drwxrwx--x 2 boinc boinc      4096 Jul 24 15:42 shared
[2025-07-24 21:07:42] -rw-r--r-- 2 boinc boinc    542877 Jul 24 15:42 input.tar.gz
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc         0 Jul 24 15:42 boinc_lockfile
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc      2536 Jul 24 16:50 pandaJob.out
[2025-07-24 21:07:42] -rw------- 1 boinc boinc    979685 Jul 24 16:50 agis_schedconf.cvmfs.json
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc      6671 Jul 24 16:50 init_data.xml
[2025-07-24 21:07:42] -rw------- 1 boinc boinc 197412608 Jul 24 19:06 HITS.45668900._000765.pool.root.1
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc       529 Jul 24 19:06 boinc_task_state.xml
[2025-07-24 21:07:42] -rw------- 1 boinc boinc      1051 Jul 24 19:06 memory_monitor_summary.json
[2025-07-24 21:07:42] -rw------- 1 boinc boinc   1593052 Jul 24 19:06 agis_ddmendpoints.agis.ALL.json
[2025-07-24 21:07:42] -rw------- 1 boinc boinc    381089 Jul 24 19:06 log.45668900._000765.job.log.tgz.1
[2025-07-24 21:07:42] -rw------- 1 boinc boinc        96 Jul 24 19:06 pilot_heartbeat.json
[2025-07-24 21:07:42] -rw------- 1 boinc boinc      7791 Jul 24 19:06 heartbeat.json
[2025-07-24 21:07:42] -rw------- 1 boinc boinc       822 Jul 24 19:07 pilotlog.txt
[2025-07-24 21:07:42] -rw------- 1 boinc boinc    745298 Jul 24 19:07 log.45668900._000765.job.log.1
[2025-07-24 21:07:42] -rw------- 1 boinc boinc       357 Jul 24 19:07 output.list
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc       620 Jul 24 19:07 runtime_log
[2025-07-24 21:07:42] -rw------- 1 boinc boinc   1146880 Jul 24 19:07 result.tar.gz
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc      8806 Jul 24 19:07 runtime_log.err
[2025-07-24 21:07:42] -rw------- 1 boinc boinc       794 Jul 24 19:07 BcbMDmeq5y7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtfwKDmBbSvHo.diag
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc        27 Jul 24 21:07 wrapper_checkpoint.txt
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc      8192 Jul 24 21:07 boinc_mmap_file
[2025-07-24 21:07:42] -rw-r--r-- 1 boinc boinc     23069 Jul 24 21:07 stderr.txt
[2025-07-24 21:07:42] HITS file was successfully produced:
[2025-07-24 21:07:42] -rw------- 1 boinc boinc 197412608 Jul 24 19:06 shared/HITS.pool.root.1
[2025-07-24 21:07:42]  *** Contents of shared directory: ***
[2025-07-24 21:07:42] total 465984
[2025-07-24 21:07:42] -rw-r--r-- 3 boinc boinc 278033377 Jul 24 15:42 ATLAS.root_0
[2025-07-24 21:07:42] -rw-r--r-- 2 boinc boinc     15095 Jul 24 15:42 start_atlas.sh
[2025-07-24 21:07:42] -rw-r--r-- 2 boinc boinc    542877 Jul 24 15:42 input.tar.gz
[2025-07-24 21:07:42] -rw------- 1 boinc boinc 197412608 Jul 24 19:06 HITS.pool.root.1
[2025-07-24 21:07:42] -rw------- 1 boinc boinc   1146880 Jul 24 19:07 result.tar.gz
21:07:44 (98620): run_atlas exited; CPU time 57981.446758
21:07:44 (98620): called boinc_finish(0)

</stderr_txt>
]]>

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