Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:49:19 (43950): wrapper (7.7.26015): starting
03:49:19 (43950): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 03:49:19] Arguments: --nthreads 8
[2025-07-24 03:49:19] Threads: 8
[2025-07-24 03:49:19] Checking for CVMFS
[2025-07-24 03:49:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 03:49:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 03:49:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 03:49:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 03:49:20] 2.11.2.0 5073 41136 380896 148686 0 188 12835397 18432001 3265 130560 0 98399849 99.440 139552695 66794 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 03:49:20] CVMFS is ok
[2025-07-24 03:49:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 03:49:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 03:49:20] Further information can be found at the LHC@home message board.
[2025-07-24 03:49:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 03:49:20] Checking for apptainer binary...
[2025-07-24 03:49:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 03:49:20] Running /usr/bin/apptainer --version
[2025-07-24 03:49:20] apptainer version 1.3.2-1.el7
[2025-07-24 03:49:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 03:49:20] c-211-39.aglt2.org
[2025-07-24 03:49:20] apptainer works
[2025-07-24 03:49:20] Set ATHENA_PROC_NUMBER=8
[2025-07-24 03:49:20] Set ATHENA_CORE_NUMBER=8
[2025-07-24 03:49:20] Starting ATLAS job with PandaID=6744422283
[2025-07-24 03:49:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 05:39:48]  *** The last 200 lines of the pilot log: ***
[2025-07-24 05:39:48] 2025-07-24 09:39:14,222 | INFO     | executing command: lscpu
[2025-07-24 05:39:48] 2025-07-24 09:39:14,240 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 05:39:48] 2025-07-24 09:39:15,053 | INFO     | monitor loop #477: job 0:6744422283 is in state 'finished'
[2025-07-24 05:39:48] 2025-07-24 09:39:15,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,345 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 05:39:48] 2025-07-24 09:39:16,349 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2994.348999999997
[2025-07-24 05:39:48] 2025-07-24 09:39:16,357 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6744422283/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,358 | INFO     | extracted standard info from prmon json
[2025-07-24 05:39:48] 2025-07-24 09:39:16,358 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 05:39:48] 2025-07-24 09:39:16,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 05:39:48] 2025-07-24 09:39:16,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 05:39:48] 2025-07-24 09:39:16,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 05:39:48] 2025-07-24 09:39:16,360 | INFO     | fitting pss+swap vs Time
[2025-07-24 05:39:48] 2025-07-24 09:39:16,360 | INFO     | sum of square deviations: 390582207.0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | sum of deviations: 12104450393.000002
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | mean x: 1753346650.5
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | mean y: 2474214.8703703703
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | -- intersect: -54335120207.883156
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | intersect: -54335120207.883156
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | chi2: 1.1368088111331582
[2025-07-24 05:39:48] 2025-07-24 09:39:16,361 | INFO     | sum of square deviations: 338804492.0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | sum of deviations: 11467663401.999998
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | mean x: 1753346498.0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | mean y: 2472338.0873786407
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | -- intersect: -59343811258.823906
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | intersect: -59343811258.823906
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | chi2: 1.1386228036934076
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | current chi2=1.1386228036934076 (change=-0.15956883360546983 %)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,362 | INFO     | right removable region: 102
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | sum of square deviations: 338804492.0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | sum of deviations: 304510170.0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | mean x: 1753346803.0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | mean y: 2507984.834951456
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | -- intersect: -1573362305.133006
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | intersect: -1573362305.133006
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | chi2: 0.001650983902403557
[2025-07-24 05:39:48] 2025-07-24 09:39:16,363 | INFO     | current chi2=0.001650983902403557 (change=99.85477031087068 %)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | sum of square deviations: 291817564.5
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | sum of deviations: 229474466.50000003
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | mean x: 1753346955.5
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | mean y: 2508218.3571428573
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | -- intersect: -1376258539.1961427
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | intersect: -1376258539.1961427
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | chi2: 0.0016037089517903442
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | current chi2=0.0016037089517903442 (change=2.8634410392729097 %)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | left removable region: 20
[2025-07-24 05:39:48] 2025-07-24 09:39:16,364 | INFO     | sum of square deviations: 170944600.5
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | sum of deviations: 608422265.5
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | mean x: 1753347077.5
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | mean y: 2505885.06097561
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | -- intersect: -6237968502.431328
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | intersect: -6237968502.431328
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | chi2: 0.000753740590484122
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | -- intersect: -6237968502.431328
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | current memory leak: 3.56 B/s (using 82 data points, chi2=0.00)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | could have reported an average CPU frequency of 2994 MHz (7 samples)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | ..............................
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . Timing measurements:
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . get job = 0 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . initial setup = 2 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . payload setup = 3 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . stage-in = 0 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . payload execution = 6561 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,365 | INFO     | . stage-out = 0 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,366 | INFO     | . log creation = 0 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,366 | INFO     | ..............................
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | 
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | job summary report
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | --------------------------------------------------
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | PanDA job id: 6744422283
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | task id: 45668900
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | errors: (none)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | pilot state: finished 
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | transexitcode: 0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | exeerrorcode: 0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | exeerrordiag: 
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | exitcode: 0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | exitmsg: OK
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | cpuconsumptiontime: 46725 s
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | nevents: 400
[2025-07-24 05:39:48] 2025-07-24 09:39:16,418 | INFO     | neventsw: 0
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | pid: 16408
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | pgrp: 16408
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | corecount: 8
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | event service: False
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | sizes: {0: 2397257, 1: 2397456, 3: 2397718, 11: 2397746, 6569: 2424952, 6570: 2433950, 6572: 2434134, 6576: 2434328}
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | --------------------------------------------------
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | 
[2025-07-24 05:39:48] 2025-07-24 09:39:16,419 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-07-24 05:39:48] 2025-07-24 09:39:16,430 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,430 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,430 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,430 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | job 6744422283 has completed (purged errors)
[2025-07-24 05:39:48] 2025-07-24 09:39:16,431 | INFO     | overall cleanup function is called
[2025-07-24 05:39:48] 2025-07-24 09:39:17,433 | INFO     | --- collectZombieJob: --- 10, [16408]
[2025-07-24 05:39:48] 2025-07-24 09:39:17,434 | INFO     | zombie collector waiting for pid 16408
[2025-07-24 05:39:48] 2025-07-24 09:39:17,434 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 05:39:48] 2025-07-24 09:39:17,434 | INFO     | collected zombie processes
[2025-07-24 05:39:48] 2025-07-24 09:39:17,434 | INFO     | will attempt to kill all subprocesses of pid=16408
[2025-07-24 05:39:48] 2025-07-24 09:39:17,540 | INFO     | process IDs to be killed: [16408] (in reverse order)
[2025-07-24 05:39:48] 2025-07-24 09:39:17,584 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 05:39:48] 2025-07-24 09:39:17,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 05:39:48] 2025-07-24 09:39:17,588 | INFO     | did not find any defunct processes belonging to 16408
[2025-07-24 05:39:48] 2025-07-24 09:39:17,591 | INFO     | did not find any defunct processes belonging to 16408
[2025-07-24 05:39:48] 2025-07-24 09:39:17,591 | INFO     | ready for new job
[2025-07-24 05:39:48] 2025-07-24 09:39:17,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 05:39:48] 2025-07-24 09:39:17,592 | INFO     | ***************************************
[2025-07-24 05:39:48] 2025-07-24 09:39:17,592 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 05:39:48] 2025-07-24 09:39:17,592 | INFO     | ***************************************
[2025-07-24 05:39:48] 2025-07-24 09:39:17,592 | INFO     | 
[2025-07-24 05:39:48] 2025-07-24 09:39:17,594 | INFO     | architecture information:
[2025-07-24 05:39:48] 2025-07-24 09:39:17,594 | INFO     | executing command: cat /etc/os-release
[2025-07-24 05:39:48] 2025-07-24 09:39:17,602 | INFO     | cat /etc/os-release:
[2025-07-24 05:39:48] NAME="CentOS Linux"
[2025-07-24 05:39:48] VERSION="7 (Core)"
[2025-07-24 05:39:48] ID="centos"
[2025-07-24 05:39:48] ID_LIKE="rhel fedora"
[2025-07-24 05:39:48] VERSION_ID="7"
[2025-07-24 05:39:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 05:39:48] ANSI_COLOR="0;31"
[2025-07-24 05:39:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 05:39:48] HOME_URL="https://www.centos.org/"
[2025-07-24 05:39:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 05:39:48] 
[2025-07-24 05:39:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 05:39:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 05:39:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 05:39:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 05:39:48] 
[2025-07-24 05:39:48] 2025-07-24 09:39:17,602 | INFO     | ***************************************
[2025-07-24 05:39:48] 2025-07-24 09:39:18,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | INFO     | sufficient remaining disk space (71763492864 B)
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | INFO     | update_server=False
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 05:39:48] 2025-07-24 09:39:18,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 05:39:48] 2025-07-24 09:39:18,189 | INFO     | all data control threads have been joined
[2025-07-24 05:39:48] 2025-07-24 09:39:18,285 | INFO     | all payload control threads have been joined
[2025-07-24 05:39:48] 2025-07-24 09:39:18,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 05:39:48] 2025-07-24 09:39:18,561 | INFO     | aborting loop
[2025-07-24 05:39:48] 2025-07-24 09:39:18,590 | INFO     | all job control threads have been joined
[2025-07-24 05:39:48] 2025-07-24 09:39:19,121 | INFO     | [job] retrieve thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,122 | INFO     | [job] queue monitor thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,165 | INFO     | [payload] failed_post thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,194 | INFO     | [data] control thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,290 | INFO     | [payload] control thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,315 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,566 | INFO     | [job] job monitor thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,593 | INFO     | [job] control thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,653 | INFO     | [data] copytool_in thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:19,735 | INFO     | [payload] validate_post thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:20,122 | INFO     | [data] copytool_out thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:20,128 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:20,137 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:20,188 | INFO     | [job] validate thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:20,465 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:22,122 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 05:39:48] 2025-07-24 09:39:22,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222004983616)>', '<ExcThread(monitor, started 140221706376960)>']
[2025-07-24 05:39:48] 2025-07-24 09:39:27,835 | INFO     | all workflow threads have been joined
[2025-07-24 05:39:48] 2025-07-24 09:39:27,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 05:39:48] 2025-07-24 09:39:27,835 | INFO     | traces error code: 0
[2025-07-24 05:39:48] 2025-07-24 09:39:27,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 05:39:48] 2025-07-24 09:39:47,903 | INFO     | PID=53157 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 05:39:48] 2025-07-24 09:39:47,903 | INFO     | .. there are 6 such processes running
[2025-07-24 05:39:48] 2025-07-24 09:39:47,904 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 05:39:48] 2025-07-24 09:39:47,904 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 05:39:48] 2025-07-24 09:39:47,904 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 05:39:48] 2025-07-24 09:39:47,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 05:39:48] 2025-07-24 09:39:47,904 | INFO     | [monitor] control thread has ended
[2025-07-24 05:39:48] 2025-07-24 09:39:47,974 [wrapper] ==== pilot stdout END ====
[2025-07-24 05:39:48] 2025-07-24 09:39:47,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 05:39:48] 2025-07-24 09:39:47,978 [wrapper] pilotpid: 53157
[2025-07-24 05:39:48] 2025-07-24 09:39:47,979 [wrapper] Pilot exit status: 0
[2025-07-24 05:39:48] 2025-07-24 09:39:47,985 [wrapper] pandaids: 6744422283
[2025-07-24 05:39:48] 2025-07-24 09:39:48,015 [wrapper] cleanup supervisor_pilot 47700 53158
[2025-07-24 05:39:48] 2025-07-24 09:39:48,017 [wrapper] Test setup, not cleaning
[2025-07-24 05:39:48] 2025-07-24 09:39:48,018 [wrapper] apfmon messages muted
[2025-07-24 05:39:48] 2025-07-24 09:39:48,020 [wrapper] ==== wrapper stdout END ====
[2025-07-24 05:39:48] 2025-07-24 09:39:48,022 [wrapper] ==== wrapper stderr END ====
[2025-07-24 05:39:48]  *** Error codes and diagnostics ***
[2025-07-24 05:39:48]     "exeErrorCode": 0,
[2025-07-24 05:39:48]     "exeErrorDiag": "",
[2025-07-24 05:39:48]     "pilotErrorCode": 0,
[2025-07-24 05:39:48]     "pilotErrorDiag": "",
[2025-07-24 05:39:48]  *** Listing of results directory ***
[2025-07-24 05:39:48] total 471800
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 03:22 pilot3.tar.gz
[2025-07-24 05:39:48] -rwx------ 1 boincer umatlas     36292 Jul 24 03:45 runpilot2-wrapper.sh
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 03:46 queuedata.json
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas       100 Jul 24 03:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 05:39:48] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 03:49 run_atlas
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas       105 Jul 24 03:49 job.xml
[2025-07-24 05:39:48] -rw-r--r-- 2 boincer umatlas 279065834 Jul 24 03:49 EVNT.45668898._000023.pool.root.1
[2025-07-24 05:39:48] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 03:49 start_atlas.sh
[2025-07-24 05:39:48] drwxrwx--x 2 boincer umatlas      4096 Jul 24 03:49 shared
[2025-07-24 05:39:48] -rw-r--r-- 2 boincer umatlas    542882 Jul 24 03:49 input.tar.gz
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas         0 Jul 24 03:49 boinc_lockfile
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas      2537 Jul 24 03:49 pandaJob.out
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas    978866 Jul 24 03:49 agis_schedconf.cvmfs.json
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas   1593041 Jul 24 03:49 agis_ddmendpoints.agis.ALL.json
[2025-07-24 05:39:48] drwx------ 4 boincer umatlas      4096 Jul 24 03:49 pilot3
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas      6338 Jul 24 05:37 init_data.xml
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas 198273372 Jul 24 05:38 HITS.45668900._000585.pool.root.1
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas       529 Jul 24 05:38 boinc_task_state.xml
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas      1031 Jul 24 05:39 memory_monitor_summary.json
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas    335727 Jul 24 05:39 log.45668900._000585.job.log.tgz.1
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas      7775 Jul 24 05:39 heartbeat.json
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 05:39 boinc_mmap_file
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas        27 Jul 24 05:39 wrapper_checkpoint.txt
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas        95 Jul 24 05:39 pilot_heartbeat.json
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas       820 Jul 24 05:39 pilotlog.txt
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas    621052 Jul 24 05:39 log.45668900._000585.job.log.1
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas       357 Jul 24 05:39 output.list
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas       620 Jul 24 05:39 runtime_log
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas    972800 Jul 24 05:39 result.tar.gz
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas      8660 Jul 24 05:39 runtime_log.err
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas       658 Jul 24 05:39 DsNMDmTp5y7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTcwKDmM07rTo.diag
[2025-07-24 05:39:48] -rw-r--r-- 1 boincer umatlas     21209 Jul 24 05:39 stderr.txt
[2025-07-24 05:39:48] HITS file was successfully produced:
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas 198273372 Jul 24 05:38 shared/HITS.pool.root.1
[2025-07-24 05:39:48]  *** Contents of shared directory: ***
[2025-07-24 05:39:48] total 467664
[2025-07-24 05:39:48] -rw-r--r-- 2 boincer umatlas 279065834 Jul 24 03:49 ATLAS.root_0
[2025-07-24 05:39:48] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 03:49 start_atlas.sh
[2025-07-24 05:39:48] -rw-r--r-- 2 boincer umatlas    542882 Jul 24 03:49 input.tar.gz
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas 198273372 Jul 24 05:38 HITS.pool.root.1
[2025-07-24 05:39:48] -rw------- 1 boincer umatlas    972800 Jul 24 05:39 result.tar.gz
05:39:49 (43950): run_atlas exited; CPU time 46438.538914
05:39:49 (43950): called boinc_finish(0)

</stderr_txt>
]]>

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