Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:43:30 (1614593): wrapper (7.7.26015): starting
03:43:30 (1614593): wrapper: running run_atlas (--nthreads 10)
[2025-07-24 03:43:30] Arguments: --nthreads 10
[2025-07-24 03:43:30] Threads: 10
[2025-07-24 03:43:30] Checking for CVMFS
[2025-07-24 03:43:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 03:43:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 03:43:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 03:43:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 03:43:32] 2.13.0.0 2209255 13778 259736 148686 2 91 24098770 32935936 11659 16776704 0 46748528 99.522 62973307 30384 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 03:43:32] CVMFS is ok
[2025-07-24 03:43:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 03:43:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 03:43:32] Further information can be found at the LHC@home message board.
[2025-07-24 03:43:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 03:43:32] Checking for apptainer binary...
[2025-07-24 03:43:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 03:43:32] Running /usr/bin/apptainer --version
[2025-07-24 03:43:33] apptainer version 1.4.1-1.el9
[2025-07-24 03:43:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 03:43:34] c-5-6.aglt2.org
[2025-07-24 03:43:34] apptainer works
[2025-07-24 03:43:34] Set ATHENA_PROC_NUMBER=10
[2025-07-24 03:43:34] Set ATHENA_CORE_NUMBER=10
[2025-07-24 03:43:34] Starting ATLAS job with PandaID=6744421338
[2025-07-24 03:43:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 11:03:17]  *** The last 200 lines of the pilot log: ***
[2025-07-24 11:03:17] 2025-07-24 15:02:44,225 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2719.86515
[2025-07-24 11:03:17] 2025-07-24 15:02:44,229 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744421338/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,230 | INFO     | extracted standard info from prmon json
[2025-07-24 11:03:17] 2025-07-24 15:02:44,230 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 11:03:17] 2025-07-24 15:02:44,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 11:03:17] 2025-07-24 15:02:44,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 11:03:17] 2025-07-24 15:02:44,231 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 11:03:17] 2025-07-24 15:02:44,235 | INFO     | fitting pss+swap vs Time
[2025-07-24 11:03:17] 2025-07-24 15:02:44,236 | INFO     | sum of square deviations: 24310565483.476467
[2025-07-24 11:03:17] 2025-07-24 15:02:44,239 | INFO     | sum of deviations: 9988487182.327045
[2025-07-24 11:03:17] 2025-07-24 15:02:44,239 | INFO     | mean x: 1753356297.1028037
[2025-07-24 11:03:17] 2025-07-24 15:02:44,239 | INFO     | mean y: 2209369.5607476635
[2025-07-24 11:03:17] 2025-07-24 15:02:44,239 | INFO     | -- intersect: -718192503.096939
[2025-07-24 11:03:17] 2025-07-24 15:02:44,239 | INFO     | intersect: -718192503.096939
[2025-07-24 11:03:17] 2025-07-24 15:02:44,240 | INFO     | chi2: 3.40956934952213
[2025-07-24 11:03:17] 2025-07-24 15:02:44,240 | INFO     | sum of square deviations: 23468500192.855785
[2025-07-24 11:03:17] 2025-07-24 15:02:44,243 | INFO     | sum of deviations: 33123931340.76124
[2025-07-24 11:03:17] 2025-07-24 15:02:44,243 | INFO     | mean x: 1753356144.607565
[2025-07-24 11:03:17] 2025-07-24 15:02:44,243 | INFO     | mean y: 2213520.1371158394
[2025-07-24 11:03:17] 2025-07-24 15:02:44,244 | INFO     | -- intersect: -2472509963.3670735
[2025-07-24 11:03:17] 2025-07-24 15:02:44,244 | INFO     | intersect: -2472509963.3670735
[2025-07-24 11:03:17] 2025-07-24 15:02:44,244 | INFO     | chi2: 2.753355145821285
[2025-07-24 11:03:17] 2025-07-24 15:02:44,244 | INFO     | current chi2=2.753355145821285 (change=19.24624890802756 %)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,244 | INFO     | right removable region: 422
[2025-07-24 11:03:17] 2025-07-24 15:02:44,245 | INFO     | sum of square deviations: 23468368676.638187
[2025-07-24 11:03:17] 2025-07-24 15:02:44,247 | INFO     | sum of deviations: -73190449894.27657
[2025-07-24 11:03:17] 2025-07-24 15:02:44,248 | INFO     | mean x: 1753356449.609929
[2025-07-24 11:03:17] 2025-07-24 15:02:44,248 | INFO     | mean y: 2224385.1134751774
[2025-07-24 11:03:17] 2025-07-24 15:02:44,248 | INFO     | -- intersect: 5470390883.611022
[2025-07-24 11:03:17] 2025-07-24 15:02:44,248 | INFO     | intersect: 5470390883.611022
[2025-07-24 11:03:17] 2025-07-24 15:02:44,248 | INFO     | chi2: 1.2906935931147614
[2025-07-24 11:03:17] 2025-07-24 15:02:44,248 | INFO     | current chi2=1.2906935931147614 (change=62.144967272900345 %)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,249 | INFO     | sum of square deviations: 22645846657.256
[2025-07-24 11:03:17] 2025-07-24 15:02:44,251 | INFO     | sum of deviations: -84963818407.11002
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | mean x: 1753356602.117225
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | mean y: 2226557.043062201
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | -- intersect: 6580557418.321016
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | intersect: 6580557418.321016
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | chi2: 1.2204604444261677
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | current chi2=1.2204604444261677 (change=5.441504402226386 %)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,252 | INFO     | left removable region: 20
[2025-07-24 11:03:17] 2025-07-24 15:02:44,253 | INFO     | sum of square deviations: 20143670447.50498
[2025-07-24 11:03:17] 2025-07-24 15:02:44,255 | INFO     | sum of deviations: -41334045013.467674
[2025-07-24 11:03:17] 2025-07-24 15:02:44,255 | INFO     | mean x: 1753356724.1169155
[2025-07-24 11:03:17] 2025-07-24 15:02:44,256 | INFO     | mean y: 2226579.0099502485
[2025-07-24 11:03:17] 2025-07-24 15:02:44,256 | INFO     | -- intersect: 3600047837.4634433
[2025-07-24 11:03:17] 2025-07-24 15:02:44,256 | INFO     | intersect: 3600047837.4634433
[2025-07-24 11:03:17] 2025-07-24 15:02:44,256 | INFO     | chi2: 0.4717467397160344
[2025-07-24 11:03:17] 2025-07-24 15:02:44,256 | INFO     | -- intersect: 3600047837.4634433
[2025-07-24 11:03:17] 2025-07-24 15:02:44,256 | INFO     | current memory leak: -2.05 B/s (using 402 data points, chi2=0.47)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | could have reported an average CPU frequency of 2607 MHz (18 samples)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | ..............................
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . Timing measurements:
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . get job = 0 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . initial setup = 6 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . payload setup = 58 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . stage-in = 0 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . payload execution = 26113 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . stage-out = 2 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,257 | INFO     | . log creation = 0 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,258 | INFO     | ..............................
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | 
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | job summary report
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | --------------------------------------------------
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | PanDA job id: 6744421338
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | task id: 45668738
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | errors: (none)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,376 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | pilot state: finished 
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | transexitcode: 0
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | exeerrorcode: 0
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | exeerrordiag: 
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | exitcode: 0
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | exitmsg: OK
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | cpuconsumptiontime: 72882 s
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | nevents: 400
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | neventsw: 0
[2025-07-24 11:03:17] 2025-07-24 15:02:44,377 | INFO     | pid: 1628419
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | pgrp: 1628419
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | corecount: 10
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | event service: False
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | sizes: {0: 2397168, 1: 2397252, 2: 2397451, 14: 2397451, 25: 2397479, 36: 2397507, 44: 2397925, 47: 2397953, 26174: 2434157, 26175: 2434156, 26178: 2443217, 26179:
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | --------------------------------------------------
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | 
[2025-07-24 11:03:17] 2025-07-24 15:02:44,378 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-24 11:03:17] 2025-07-24 15:02:44,398 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,398 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,398 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,399 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 11:03:17] 2025-07-24 15:02:44,401 | INFO     | job 6744421338 has completed (purged errors)
[2025-07-24 11:03:17] 2025-07-24 15:02:44,401 | INFO     | overall cleanup function is called
[2025-07-24 11:03:17] 2025-07-24 15:02:44,750 | INFO     | PID=1620013 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-24 11:03:17] 2025-07-24 15:02:44,750 | INFO     | .. there are 12 such processes running
[2025-07-24 11:03:17] 2025-07-24 15:02:45,409 | INFO     | --- collectZombieJob: --- 10, [1628419]
[2025-07-24 11:03:17] 2025-07-24 15:02:45,409 | INFO     | zombie collector waiting for pid 1628419
[2025-07-24 11:03:17] 2025-07-24 15:02:45,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 11:03:17] 2025-07-24 15:02:45,409 | INFO     | collected zombie processes
[2025-07-24 11:03:17] 2025-07-24 15:02:45,410 | INFO     | will attempt to kill all subprocesses of pid=1628419
[2025-07-24 11:03:17] 2025-07-24 15:02:45,683 | INFO     | process IDs to be killed: [1628419] (in reverse order)
[2025-07-24 11:03:17] 2025-07-24 15:02:45,767 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 11:03:17] 2025-07-24 15:02:45,767 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 11:03:17] 2025-07-24 15:02:45,778 | INFO     | did not find any defunct processes belonging to 1628419
[2025-07-24 11:03:17] 2025-07-24 15:02:45,788 | INFO     | did not find any defunct processes belonging to 1628419
[2025-07-24 11:03:17] 2025-07-24 15:02:45,789 | INFO     | ready for new job
[2025-07-24 11:03:17] 2025-07-24 15:02:45,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 11:03:17] 2025-07-24 15:02:45,791 | INFO     | ***************************************
[2025-07-24 11:03:17] 2025-07-24 15:02:45,791 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 11:03:17] 2025-07-24 15:02:45,792 | INFO     | ***************************************
[2025-07-24 11:03:17] 2025-07-24 15:02:45,792 | INFO     | 
[2025-07-24 11:03:17] 2025-07-24 15:02:45,806 | INFO     | architecture information:
[2025-07-24 11:03:17] 2025-07-24 15:02:45,806 | INFO     | executing command: cat /etc/os-release
[2025-07-24 11:03:17] 2025-07-24 15:02:45,820 | INFO     | cat /etc/os-release:
[2025-07-24 11:03:17] NAME="CentOS Linux"
[2025-07-24 11:03:17] VERSION="7 (Core)"
[2025-07-24 11:03:17] ID="centos"
[2025-07-24 11:03:17] ID_LIKE="rhel fedora"
[2025-07-24 11:03:17] VERSION_ID="7"
[2025-07-24 11:03:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 11:03:17] ANSI_COLOR="0;31"
[2025-07-24 11:03:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 11:03:17] HOME_URL="https://www.centos.org/"
[2025-07-24 11:03:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 11:03:17] 
[2025-07-24 11:03:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 11:03:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 11:03:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 11:03:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 11:03:17] 
[2025-07-24 11:03:17] 2025-07-24 15:02:45,821 | INFO     | ***************************************
[2025-07-24 11:03:17] 2025-07-24 15:02:46,324 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-24 11:03:17] 2025-07-24 15:02:46,344 | INFO     | sufficient remaining disk space (76335284224 B)
[2025-07-24 11:03:17] 2025-07-24 15:02:46,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 11:03:17] 2025-07-24 15:02:46,345 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 11:03:17] 2025-07-24 15:02:46,345 | INFO     | update_server=False
[2025-07-24 11:03:17] 2025-07-24 15:02:46,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 11:03:17] 2025-07-24 15:02:46,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 11:03:17] 2025-07-24 15:02:46,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 11:03:17] 2025-07-24 15:02:46,780 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-24 11:03:17] 2025-07-24 15:02:46,780 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-24 11:03:17] 2025-07-24 15:02:46,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 11:03:17] 2025-07-24 15:02:46,780 | INFO     | will abort loop
[2025-07-24 11:03:17] 2025-07-24 15:02:46,805 | INFO     | all data control threads have been joined
[2025-07-24 11:03:17] 2025-07-24 15:02:47,350 | INFO     | [job] retrieve thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,350 | INFO     | [job] queue monitor thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,422 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,507 | INFO     | [payload] validate_post thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,613 | INFO     | all job control threads have been joined
[2025-07-24 11:03:17] 2025-07-24 15:02:47,702 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,747 | INFO     | all payload control threads have been joined
[2025-07-24 11:03:17] 2025-07-24 15:02:47,773 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,785 | INFO     | [job] job monitor thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,810 | INFO     | [data] control thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:47,881 | INFO     | [job] validate thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:48,304 | INFO     | [data] copytool_in thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:48,541 | INFO     | [data] copytool_out thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:48,618 | INFO     | [job] control thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:48,637 | INFO     | [payload] failed_post thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:48,753 | INFO     | [payload] control thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:49,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 11:03:17] 2025-07-24 15:02:53,517 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 11:03:17] 2025-07-24 15:02:53,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139707023304512)>', '<ExcThread(monitor, started 139706679416576)>']
[2025-07-24 11:03:17] 2025-07-24 15:02:58,575 | INFO     | all workflow threads have been joined
[2025-07-24 11:03:17] 2025-07-24 15:02:58,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 11:03:17] 2025-07-24 15:02:58,575 | INFO     | traces error code: 0
[2025-07-24 11:03:17] 2025-07-24 15:02:58,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 11:03:17] 2025-07-24 15:03:17,227 | INFO     | PID=1620013 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 11:03:17] 2025-07-24 15:03:17,228 | INFO     | .. there are 12 such processes running
[2025-07-24 11:03:17] 2025-07-24 15:03:17,228 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 11:03:17] 2025-07-24 15:03:17,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 11:03:17] 2025-07-24 15:03:17,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 11:03:17] 2025-07-24 15:03:17,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 11:03:17] 2025-07-24 15:03:17,229 | CRITICAL | thread 'MainThread' is not alive
[2025-07-24 11:03:17] 2025-07-24 15:03:17,229 | INFO     | [monitor] control thread has ended
[2025-07-24 11:03:17] 2025-07-24 15:03:17,404 [wrapper] ==== pilot stdout END ====
[2025-07-24 11:03:17] 2025-07-24 15:03:17,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 11:03:17] 2025-07-24 15:03:17,410 [wrapper] pilotpid: 1620013
[2025-07-24 11:03:17] 2025-07-24 15:03:17,413 [wrapper] Pilot exit status: 0
[2025-07-24 11:03:17] 2025-07-24 15:03:17,429 [wrapper] pandaids: 6744421338
[2025-07-24 11:03:17] 2025-07-24 15:03:17,490 [wrapper] cleanup supervisor_pilot 2494282 1620014
[2025-07-24 11:03:17] 2025-07-24 15:03:17,493 [wrapper] Test setup, not cleaning
[2025-07-24 11:03:17] 2025-07-24 15:03:17,497 [wrapper] apfmon messages muted
[2025-07-24 11:03:17] 2025-07-24 15:03:17,500 [wrapper] ==== wrapper stdout END ====
[2025-07-24 11:03:17] 2025-07-24 15:03:17,502 [wrapper] ==== wrapper stderr END ====
[2025-07-24 11:03:17]  *** Error codes and diagnostics ***
[2025-07-24 11:03:17]     "exeErrorCode": 0,
[2025-07-24 11:03:17]     "exeErrorDiag": "",
[2025-07-24 11:03:17]     "pilotErrorCode": 0,
[2025-07-24 11:03:17]     "pilotErrorDiag": "",
[2025-07-24 11:03:17]  *** Listing of results directory ***
[2025-07-24 11:03:17] total 526916
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 03:22 pilot3.tar.gz
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 03:41 queuedata.json
[2025-07-24 11:03:17] -rwx------. 1 boincer umatlas     36292 Jul 24 03:42 runpilot2-wrapper.sh
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas       100 Jul 24 03:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 11:03:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 03:43 run_atlas
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas       105 Jul 24 03:43 job.xml
[2025-07-24 11:03:17] -rw-r--r--. 2 boincer umatlas 303610300 Jul 24 03:43 EVNT.45668735._000040.pool.root.1
[2025-07-24 11:03:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 03:43 start_atlas.sh
[2025-07-24 11:03:17] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 03:43 shared
[2025-07-24 11:03:17] -rw-r--r--. 2 boincer umatlas    542881 Jul 24 03:43 input.tar.gz
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas         0 Jul 24 03:43 boinc_lockfile
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas      2514 Jul 24 03:43 pandaJob.out
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas    978866 Jul 24 03:44 agis_schedconf.cvmfs.json
[2025-07-24 11:03:17] drwx------. 4 boincer umatlas      4096 Jul 24 03:44 pilot3
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas       531 Jul 24 11:01 boinc_task_state.xml
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas 226930912 Jul 24 11:01 HITS.45668738._001021.pool.root.1
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas      1055 Jul 24 11:02 memory_monitor_summary.json
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas        95 Jul 24 11:02 pilot_heartbeat.json
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas   1593048 Jul 24 11:02 agis_ddmendpoints.agis.ALL.json
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas    534209 Jul 24 11:02 log.45668738._001021.job.log.tgz.1
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas      7814 Jul 24 11:02 heartbeat.json
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas      6655 Jul 24 11:03 init_data.xml
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas      8192 Jul 24 11:03 boinc_mmap_file
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas        28 Jul 24 11:03 wrapper_checkpoint.txt
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas       893 Jul 24 11:03 pilotlog.txt
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas   2037665 Jul 24 11:03 log.45668738._001021.job.log.1
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas       357 Jul 24 11:03 output.list
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas       620 Jul 24 11:03 runtime_log
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas   2590720 Jul 24 11:03 result.tar.gz
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas      8648 Jul 24 11:03 runtime_log.err
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas       656 Jul 24 11:03 QljMDmKm5y7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmv5LLDmTGwpXo.diag
[2025-07-24 11:03:17] -rw-r--r--. 1 boincer umatlas     21316 Jul 24 11:03 stderr.txt
[2025-07-24 11:03:17] HITS file was successfully produced:
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas 226930912 Jul 24 11:01 shared/HITS.pool.root.1
[2025-07-24 11:03:17]  *** Contents of shared directory: ***
[2025-07-24 11:03:17] total 521200
[2025-07-24 11:03:17] -rw-r--r--. 2 boincer umatlas 303610300 Jul 24 03:43 ATLAS.root_0
[2025-07-24 11:03:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 03:43 start_atlas.sh
[2025-07-24 11:03:17] -rw-r--r--. 2 boincer umatlas    542881 Jul 24 03:43 input.tar.gz
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas 226930912 Jul 24 11:01 HITS.pool.root.1
[2025-07-24 11:03:17] -rw-------. 1 boincer umatlas   2590720 Jul 24 11:03 result.tar.gz
11:03:19 (1614593): run_atlas exited; CPU time 73627.331380
11:03:19 (1614593): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN