Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:12:30 (26905): wrapper (7.7.26015): starting
03:12:30 (26905): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 03:12:30] Arguments: --nthreads 8
[2025-07-24 03:12:30] Threads: 8
[2025-07-24 03:12:30] Checking for CVMFS
[2025-07-24 03:12:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 03:12:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 03:12:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 03:12:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 03:12:30] 2.11.2.0 2991 107366 83140 148685 1 1 14783044 20275201 1 130560 0 25213391 99.959 9086567 10544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 03:12:30] CVMFS is ok
[2025-07-24 03:12:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 03:12:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 03:12:30] Further information can be found at the LHC@home message board.
[2025-07-24 03:12:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 03:12:30] Checking for apptainer binary...
[2025-07-24 03:12:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 03:12:30] Running /usr/bin/apptainer --version
[2025-07-24 03:12:30] apptainer version 1.3.2-1.el7
[2025-07-24 03:12:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 03:12:32] c-115-15.aglt2.org
[2025-07-24 03:12:32] apptainer works
[2025-07-24 03:12:32] Set ATHENA_PROC_NUMBER=8
[2025-07-24 03:12:32] Set ATHENA_CORE_NUMBER=8
[2025-07-24 03:12:32] Starting ATLAS job with PandaID=6743782224
[2025-07-24 03:12:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:12:04 (13485): wrapper (7.7.26015): starting
04:12:04 (13485): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 04:12:04] Arguments: --nthreads 8
[2025-07-24 04:12:04] Threads: 8
[2025-07-24 04:12:04] This job has been restarted, cleaning up previous attempt
[2025-07-24 04:12:04] Checking for CVMFS
[2025-07-24 04:12:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 04:12:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 04:12:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 04:12:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 04:12:05] 2.11.2.0 2991 107425 83572 148686 2 133 14823989 20275200 1 130560 0 25281590 99.959 9089330 10546 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 04:12:05] CVMFS is ok
[2025-07-24 04:12:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 04:12:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 04:12:05] Further information can be found at the LHC@home message board.
[2025-07-24 04:12:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 04:12:05] Checking for apptainer binary...
[2025-07-24 04:12:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 04:12:05] Running /usr/bin/apptainer --version
[2025-07-24 04:12:05] apptainer version 1.3.2-1.el7
[2025-07-24 04:12:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 04:12:07] c-115-15.aglt2.org
[2025-07-24 04:12:07] apptainer works
[2025-07-24 04:12:07] Set ATHENA_PROC_NUMBER=8
[2025-07-24 04:12:07] Set ATHENA_CORE_NUMBER=8
[2025-07-24 04:12:07] Starting ATLAS job with PandaID=6743782224
[2025-07-24 04:12:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 07:05:19]  *** The last 200 lines of the pilot log: ***
[2025-07-24 07:05:19] 2025-07-24 11:04:46,714 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 07:05:19] 2025-07-24 11:04:46,715 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 07:05:19] 2025-07-24 11:04:46,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 07:05:19] 2025-07-24 11:04:46,719 | INFO     | fitting pss+swap vs Time
[2025-07-24 07:05:19] 2025-07-24 11:04:46,720 | INFO     | sum of square deviations: 1496660620.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,721 | INFO     | sum of deviations: 21144564261.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,721 | INFO     | mean x: 1753349898.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,721 | INFO     | mean y: 2546880.5621301774
[2025-07-24 07:05:19] 2025-07-24 11:04:46,721 | INFO     | -- intersect: -24768479426.17586
[2025-07-24 07:05:19] 2025-07-24 11:04:46,721 | INFO     | intersect: -24768479426.17586
[2025-07-24 07:05:19] 2025-07-24 11:04:46,722 | INFO     | chi2: 1.5445423928107649
[2025-07-24 07:05:19] 2025-07-24 11:04:46,722 | INFO     | sum of square deviations: 1367709365.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,723 | INFO     | sum of deviations: 20666878049.500004
[2025-07-24 07:05:19] 2025-07-24 11:04:46,723 | INFO     | mean x: 1753349745.5
[2025-07-24 07:05:19] 2025-07-24 11:04:46,723 | INFO     | mean y: 2546316.298780488
[2025-07-24 07:05:19] 2025-07-24 11:04:46,723 | INFO     | -- intersect: -26491580503.0861
[2025-07-24 07:05:19] 2025-07-24 11:04:46,723 | INFO     | intersect: -26491580503.0861
[2025-07-24 07:05:19] 2025-07-24 11:04:46,723 | INFO     | chi2: 1.5456804371399282
[2025-07-24 07:05:19] 2025-07-24 11:04:46,724 | INFO     | current chi2=1.5456804371399282 (change=-0.07368165059505388 %)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,724 | INFO     | right removable region: 163
[2025-07-24 07:05:19] 2025-07-24 11:04:46,724 | INFO     | sum of square deviations: 1367709365.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | sum of deviations: -7509129158.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | mean x: 1753350050.5
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | mean y: 2580412.6463414636
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | -- intersect: 9628991056.10225
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | intersect: 9628991056.10225
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | chi2: 0.06897194415632683
[2025-07-24 07:05:19] 2025-07-24 11:04:46,725 | INFO     | current chi2=0.06897194415632683 (change=95.53447386893595 %)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,726 | INFO     | sum of square deviations: 1246386160.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,726 | INFO     | sum of deviations: -12081082757.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,727 | INFO     | mean x: 1753350203.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,727 | INFO     | mean y: 2586081.3144654087
[2025-07-24 07:05:19] 2025-07-24 11:04:46,727 | INFO     | -- intersect: 16997615057.282675
[2025-07-24 07:05:19] 2025-07-24 11:04:46,727 | INFO     | intersect: 16997615057.282675
[2025-07-24 07:05:19] 2025-07-24 11:04:46,727 | INFO     | chi2: 0.013301183439335238
[2025-07-24 07:05:19] 2025-07-24 11:04:46,727 | INFO     | current chi2=0.013301183439335238 (change=80.71508117969282 %)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,728 | INFO     | sum of square deviations: 1132458442.5
[2025-07-24 07:05:19] 2025-07-24 11:04:46,728 | INFO     | sum of deviations: -11891400024.000002
[2025-07-24 07:05:19] 2025-07-24 11:04:46,728 | INFO     | mean x: 1753350355.5
[2025-07-24 07:05:19] 2025-07-24 11:04:46,728 | INFO     | mean y: 2585821.2467532465
[2025-07-24 07:05:19] 2025-07-24 11:04:46,729 | INFO     | -- intersect: 18413672424.51795
[2025-07-24 07:05:19] 2025-07-24 11:04:46,729 | INFO     | intersect: 18413672424.51795
[2025-07-24 07:05:19] 2025-07-24 11:04:46,729 | INFO     | chi2: 0.01202249910364805
[2025-07-24 07:05:19] 2025-07-24 11:04:46,729 | INFO     | current chi2=0.01202249910364805 (change=9.613312541091414 %)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,729 | INFO     | left removable region: 30
[2025-07-24 07:05:19] 2025-07-24 11:04:46,729 | INFO     | sum of square deviations: 729472282.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,730 | INFO     | sum of deviations: -8412378972.000001
[2025-07-24 07:05:19] 2025-07-24 11:04:46,730 | INFO     | mean x: 1753350630.0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,730 | INFO     | mean y: 2581848.84962406
[2025-07-24 07:05:19] 2025-07-24 11:04:46,730 | INFO     | -- intersect: 20222472767.68642
[2025-07-24 07:05:19] 2025-07-24 11:04:46,731 | INFO     | intersect: 20222472767.68642
[2025-07-24 07:05:19] 2025-07-24 11:04:46,731 | INFO     | chi2: 0.011087835101562632
[2025-07-24 07:05:19] 2025-07-24 11:04:46,731 | INFO     | -- intersect: 20222472767.68642
[2025-07-24 07:05:19] 2025-07-24 11:04:46,731 | INFO     | current memory leak: -11.53 B/s (using 133 data points, chi2=0.01)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,731 | INFO     | could have reported an average CPU frequency of 2182 MHz (9 samples)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | ..............................
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . Timing measurements:
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . get job = 0 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . initial setup = 1 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . payload setup = 11 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . stage-in = 0 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . payload execution = 10301 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . stage-out = 2 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | . log creation = 0 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,732 | INFO     | ..............................
[2025-07-24 07:05:19] 2025-07-24 11:04:46,816 | INFO     | 
[2025-07-24 07:05:19] 2025-07-24 11:04:46,816 | INFO     | job summary report
[2025-07-24 07:05:19] 2025-07-24 11:04:46,817 | INFO     | --------------------------------------------------
[2025-07-24 07:05:19] 2025-07-24 11:04:46,817 | INFO     | PanDA job id: 6743782224
[2025-07-24 07:05:19] 2025-07-24 11:04:46,817 | INFO     | task id: 45697472
[2025-07-24 07:05:19] 2025-07-24 11:04:46,817 | INFO     | errors: (none)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 07:05:19] 2025-07-24 11:04:46,817 | INFO     | pilot state: finished 
[2025-07-24 07:05:19] 2025-07-24 11:04:46,818 | INFO     | transexitcode: 0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,818 | INFO     | exeerrorcode: 0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,818 | INFO     | exeerrordiag: 
[2025-07-24 07:05:19] 2025-07-24 11:04:46,818 | INFO     | exitcode: 0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,818 | INFO     | exitmsg: OK
[2025-07-24 07:05:19] 2025-07-24 11:04:46,818 | INFO     | cpuconsumptiontime: 76896 s
[2025-07-24 07:05:19] 2025-07-24 11:04:46,819 | INFO     | nevents: 400
[2025-07-24 07:05:19] 2025-07-24 11:04:46,819 | INFO     | neventsw: 0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,819 | INFO     | pid: 23657
[2025-07-24 07:05:19] 2025-07-24 11:04:46,819 | INFO     | pgrp: 23657
[2025-07-24 07:05:19] 2025-07-24 11:04:46,819 | INFO     | corecount: 8
[2025-07-24 07:05:19] 2025-07-24 11:04:46,819 | INFO     | event service: False
[2025-07-24 07:05:19] 2025-07-24 11:04:46,820 | INFO     | sizes: {0: 2397262, 1: 2397461, 6: 2397723, 11: 2397751, 10316: 2426438, 10320: 2435436, 10323: 2435620, 10329: 2435878}
[2025-07-24 07:05:19] 2025-07-24 11:04:46,820 | INFO     | --------------------------------------------------
[2025-07-24 07:05:19] 2025-07-24 11:04:46,820 | INFO     | 
[2025-07-24 07:05:19] 2025-07-24 11:04:46,820 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-24 07:05:19] 2025-07-24 11:04:46,848 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,848 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,848 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,849 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,849 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,849 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,849 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,849 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,849 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,850 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,850 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,850 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,850 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,850 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,850 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,851 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,851 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,851 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,851 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,851 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 07:05:19] 2025-07-24 11:04:46,851 | INFO     | job 6743782224 has completed (purged errors)
[2025-07-24 07:05:19] 2025-07-24 11:04:46,852 | INFO     | overall cleanup function is called
[2025-07-24 07:05:19] 2025-07-24 11:04:47,250 | INFO     | PID=17164 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 07:05:19] 2025-07-24 11:04:47,859 | INFO     | --- collectZombieJob: --- 10, [23657]
[2025-07-24 07:05:19] 2025-07-24 11:04:47,860 | INFO     | zombie collector waiting for pid 23657
[2025-07-24 07:05:19] 2025-07-24 11:04:47,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 07:05:19] 2025-07-24 11:04:47,860 | INFO     | collected zombie processes
[2025-07-24 07:05:19] 2025-07-24 11:04:47,860 | INFO     | will attempt to kill all subprocesses of pid=23657
[2025-07-24 07:05:19] 2025-07-24 11:04:47,944 | INFO     | process IDs to be killed: [23657] (in reverse order)
[2025-07-24 07:05:19] 2025-07-24 11:04:48,001 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 07:05:19] 2025-07-24 11:04:48,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 07:05:19] 2025-07-24 11:04:48,006 | INFO     | did not find any defunct processes belonging to 23657
[2025-07-24 07:05:19] 2025-07-24 11:04:48,010 | INFO     | did not find any defunct processes belonging to 23657
[2025-07-24 07:05:19] 2025-07-24 11:04:48,011 | INFO     | ready for new job
[2025-07-24 07:05:19] 2025-07-24 11:04:48,011 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 07:05:19] 2025-07-24 11:04:48,012 | INFO     | ***************************************
[2025-07-24 07:05:19] 2025-07-24 11:04:48,013 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 07:05:19] 2025-07-24 11:04:48,013 | INFO     | ***************************************
[2025-07-24 07:05:19] 2025-07-24 11:04:48,013 | INFO     | 
[2025-07-24 07:05:19] 2025-07-24 11:04:48,013 | INFO     | architecture information:
[2025-07-24 07:05:19] 2025-07-24 11:04:48,014 | INFO     | executing command: cat /etc/os-release
[2025-07-24 07:05:19] 2025-07-24 11:04:48,032 | INFO     | cat /etc/os-release:
[2025-07-24 07:05:19] NAME="CentOS Linux"
[2025-07-24 07:05:19] VERSION="7 (Core)"
[2025-07-24 07:05:19] ID="centos"
[2025-07-24 07:05:19] ID_LIKE="rhel fedora"
[2025-07-24 07:05:19] VERSION_ID="7"
[2025-07-24 07:05:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 07:05:19] ANSI_COLOR="0;31"
[2025-07-24 07:05:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 07:05:19] HOME_URL="https://www.centos.org/"
[2025-07-24 07:05:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 07:05:19] 
[2025-07-24 07:05:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 07:05:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 07:05:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 07:05:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 07:05:19] 
[2025-07-24 07:05:19] 2025-07-24 11:04:48,033 | INFO     | ***************************************
[2025-07-24 07:05:19] 2025-07-24 11:04:48,536 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-24 07:05:19] 2025-07-24 11:04:48,557 | INFO     | sufficient remaining disk space (18298699776 B)
[2025-07-24 07:05:19] 2025-07-24 11:04:48,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 07:05:19] 2025-07-24 11:04:48,558 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 07:05:19] 2025-07-24 11:04:48,558 | INFO     | update_server=False
[2025-07-24 07:05:19] 2025-07-24 11:04:48,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 07:05:19] 2025-07-24 11:04:48,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 07:05:19] 2025-07-24 11:04:48,559 | INFO     | aborting loop
[2025-07-24 07:05:19] 2025-07-24 11:04:48,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 07:05:19] 2025-07-24 11:04:48,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 07:05:19] 2025-07-24 11:04:48,675 | INFO     | all job control threads have been joined
[2025-07-24 07:05:19] 2025-07-24 11:04:49,369 | INFO     | all data control threads have been joined
[2025-07-24 07:05:19] 2025-07-24 11:04:49,392 | INFO     | all payload control threads have been joined
[2025-07-24 07:05:19] 2025-07-24 11:04:49,560 | INFO     | [job] retrieve thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:49,564 | INFO     | [job] job monitor thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:49,565 | INFO     | [job] queue monitor thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:49,680 | INFO     | [job] control thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:49,986 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,235 | INFO     | [payload] failed_post thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,375 | INFO     | [data] control thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,398 | INFO     | [payload] control thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,566 | INFO     | [data] copytool_out thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,706 | INFO     | [job] validate thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,717 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,769 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:50,792 | INFO     | [data] copytool_in thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:51,136 | INFO     | [payload] validate_post thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:51,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 07:05:19] 2025-07-24 11:04:55,205 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:58,917 | INFO     | job.realtimelogging is not enabled
[2025-07-24 07:05:19] 2025-07-24 11:04:59,917 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 07:05:19] 2025-07-24 11:04:59,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655674976064)>', '<ExcThread(monitor, started 139654904911616)>']
[2025-07-24 07:05:19] 2025-07-24 11:05:04,959 | INFO     | all workflow threads have been joined
[2025-07-24 07:05:19] 2025-07-24 11:05:04,959 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 07:05:19] 2025-07-24 11:05:04,959 | INFO     | traces error code: 0
[2025-07-24 07:05:19] 2025-07-24 11:05:04,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 07:05:19] 2025-07-24 11:05:19,455 | INFO     | PID=17164 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 07:05:19] 2025-07-24 11:05:19,455 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 07:05:19] 2025-07-24 11:05:19,455 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 07:05:19] 2025-07-24 11:05:19,455 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 07:05:19] 2025-07-24 11:05:19,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 07:05:19] 2025-07-24 11:05:19,456 | INFO     | [monitor] control thread has ended
[2025-07-24 07:05:19] 2025-07-24 11:05:19,557 [wrapper] ==== pilot stdout END ====
[2025-07-24 07:05:19] 2025-07-24 11:05:19,561 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 07:05:19] 2025-07-24 11:05:19,566 [wrapper] pilotpid: 17164
[2025-07-24 07:05:19] 2025-07-24 11:05:19,570 [wrapper] Pilot exit status: 0
[2025-07-24 07:05:19] 2025-07-24 11:05:19,589 [wrapper] pandaids: 6743782224 6743782224
[2025-07-24 07:05:19] 2025-07-24 11:05:19,633 [wrapper] cleanup supervisor_pilot 24767 17165
[2025-07-24 07:05:19] 2025-07-24 11:05:19,638 [wrapper] Test setup, not cleaning
[2025-07-24 07:05:19] 2025-07-24 11:05:19,643 [wrapper] apfmon messages muted
[2025-07-24 07:05:19] 2025-07-24 11:05:19,647 [wrapper] ==== wrapper stdout END ====
[2025-07-24 07:05:19] 2025-07-24 11:05:19,652 [wrapper] ==== wrapper stderr END ====
[2025-07-24 07:05:19]  *** Error codes and diagnostics ***
[2025-07-24 07:05:19]     "exeErrorCode": 0,
[2025-07-24 07:05:19]     "exeErrorDiag": "",
[2025-07-24 07:05:19]     "pilotErrorCode": 0,
[2025-07-24 07:05:19]     "pilotErrorDiag": "",
[2025-07-24 07:05:19]  *** Listing of results directory ***
[2025-07-24 07:05:19] total 926336
[2025-07-24 07:05:19] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas    530466 Jul 23 13:45 pilot3.tar.gz
[2025-07-24 07:05:19] -rwx------ 1 boincer umatlas     36292 Jul 23 14:36 runpilot2-wrapper.sh
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas      5112 Jul 23 14:36 queuedata.json
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas       100 Jul 24 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 07:05:19] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 03:12 run_atlas
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas       105 Jul 24 03:12 job.xml
[2025-07-24 07:05:19] -rw-r--r-- 3 boincer umatlas 331407295 Jul 24 03:12 EVNT.45697470._000069.pool.root.1
[2025-07-24 07:05:19] -rw-r--r-- 3 boincer umatlas 331407295 Jul 24 03:12 ATLAS.root_0
[2025-07-24 07:05:19] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 03:12 start_atlas.sh
[2025-07-24 07:05:19] drwxrwx--x 2 boincer umatlas      4096 Jul 24 03:12 shared
[2025-07-24 07:05:19] -rw-r--r-- 2 boincer umatlas    542906 Jul 24 03:12 input.tar.gz
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas         0 Jul 24 03:12 boinc_lockfile
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas      2612 Jul 24 04:12 pandaJob.out
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas    978866 Jul 24 04:12 agis_schedconf.cvmfs.json
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas      5826 Jul 24 07:02 init_data.xml
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas 279310048 Jul 24 07:03 HITS.45697472._006317.pool.root.1
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas      1061 Jul 24 07:04 memory_monitor_summary.json
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas       531 Jul 24 07:04 boinc_task_state.xml
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas   1593041 Jul 24 07:04 agis_ddmendpoints.agis.ALL.json
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas    356145 Jul 24 07:04 log.45697472._006317.job.log.tgz.1
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas        96 Jul 24 07:04 pilot_heartbeat.json
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas      7845 Jul 24 07:04 heartbeat.json
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas      8192 Jul 24 07:05 boinc_mmap_file
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas        28 Jul 24 07:05 wrapper_checkpoint.txt
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas       745 Jul 24 07:05 pilotlog.txt
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas    932351 Jul 24 07:05 log.45697472._006317.job.log.1
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas       357 Jul 24 07:05 output.list
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas       620 Jul 24 07:05 runtime_log
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas   1310720 Jul 24 07:05 result.tar.gz
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas      8746 Jul 24 07:05 runtime_log.err
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas       788 Jul 24 07:05 3GqMDmxVty7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOXwKDmEr49Dm.diag
[2025-07-24 07:05:19] -rw-r--r-- 1 boincer umatlas     23149 Jul 24 07:05 stderr.txt
[2025-07-24 07:05:19] HITS file was successfully produced:
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas 279310048 Jul 24 07:03 shared/HITS.pool.root.1
[2025-07-24 07:05:19]  *** Contents of shared directory: ***
[2025-07-24 07:05:19] total 598236
[2025-07-24 07:05:19] -rw-r--r-- 3 boincer umatlas 331407295 Jul 24 03:12 ATLAS.root_0
[2025-07-24 07:05:19] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 03:12 start_atlas.sh
[2025-07-24 07:05:19] -rw-r--r-- 2 boincer umatlas    542906 Jul 24 03:12 input.tar.gz
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas 279310048 Jul 24 07:03 HITS.pool.root.1
[2025-07-24 07:05:19] -rw------- 1 boincer umatlas   1310720 Jul 24 07:05 result.tar.gz
07:05:21 (13485): run_atlas exited; CPU time 76835.837291
07:05:21 (13485): called boinc_finish(0)

</stderr_txt>
]]>

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