Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:17:30 (3830269): wrapper (7.7.26015): starting
18:17:30 (3830269): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 18:17:30] Arguments: --nthreads 8
[2025-07-23 18:17:30] Threads: 8
[2025-07-23 18:17:30] Checking for CVMFS
[2025-07-23 18:17:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 18:17:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 18:17:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 18:17:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 18:17:31] 2.11.3.0 231875 473921 151020 148676 2 457 44969582 45568000 14748 130560 0 2567812334 99.772 1894143307 19073 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-23 18:17:31] CVMFS is ok
[2025-07-23 18:17:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 18:17:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 18:17:31] Further information can be found at the LHC@home message board.
[2025-07-23 18:17:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 18:17:31] Checking for apptainer binary...
[2025-07-23 18:17:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 18:17:31] Running /usr/bin/apptainer --version
[2025-07-23 18:17:31] apptainer version 1.3.3-1.el9
[2025-07-23 18:17:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 18:17:32] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0019.triumf.lcg
[2025-07-23 18:17:32] apptainer works
[2025-07-23 18:17:32] Set ATHENA_PROC_NUMBER=8
[2025-07-23 18:17:32] Set ATHENA_CORE_NUMBER=8
[2025-07-23 18:17:32] Starting ATLAS job with PandaID=6744129945
[2025-07-23 18:17:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 18:23:02]  *** The last 200 lines of the pilot log: ***
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | ..............................
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . Timing measurements:
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . get job = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . initial setup = 5 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . payload setup = 19 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . stage-in = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . payload execution = 57 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . stage-out = 1 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . log creation = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | ..............................
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744129945/pilotlog.txt
[2025-07-23 18:23:02] 2025-07-24 01:22:28,327 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-23 18:23:02] - Log from pilotlog.txt -
[2025-07-23 18:23:02] 2025-07-24 01:22:28,310 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744129945/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,311 | INFO     | extracted standard info from prmon json
[2025-07-23 18:23:02] 2025-07-24 01:22:28,311 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 18:23:02] 2025-07-24 01:22:28,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 18:23:02] 2025-07-24 01:22:28,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 18:23:02] 2025-07-24 01:22:28,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | WARNING  | wrong length of table data, x=[1753319963.0], y=[2289.0] (must be same and length>=4)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | ..............................
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . Timing measurements:
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . get job = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . initial setup = 5 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . payload setup = 19 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . stage-in = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . payload execution = 57 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . stage-out = 1 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . log creation = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | ..............................
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744129945/pilotlog.txt
[2025-07-23 18:23:02] 2025-07-24 01:22:28,328 | WARNING  | 
[2025-07-23 18:23:02] [begin log extracts]
[2025-07-23 18:23:02] - Log from pilotlog.txt -
[2025-07-23 18:23:02] 2025-07-24 01:22:28,310 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744129945/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,311 | INFO     | extracted standard info from prmon json
[2025-07-23 18:23:02] 2025-07-24 01:22:28,311 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 18:23:02] 2025-07-24 01:22:28,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 18:23:02] 2025-07-24 01:22:28,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 18:23:02] 2025-07-24 01:22:28,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | WARNING  | wrong length of table data, x=[1753319963.0], y=[2289.0] (must be same and length>=4)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | ..............................
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . Timing measurements:
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . get job = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,313 | INFO     | . initial setup = 5 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . payload setup = 19 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . stage-in = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . payload execution = 57 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . stage-out = 1 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | . log creation = 0 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | ..............................
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 18:23:02] 2025-07-24 01:22:28,314 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744129945/pilotlog.txt
[2025-07-23 18:23:02] [end log extracts]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,328 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,329 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-23 18:23:02] 2025-07-24 01:22:28,939 | INFO     | 
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | job summary report
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | --------------------------------------------------
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | PanDA job id: 6744129945
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | task id: 45697490
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-23 18:20:01,761 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | pilot state: failed 
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | transexitcode: 65
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | exeerrorcode: 65
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | exitcode: 65
[2025-07-23 18:23:02] 2025-07-24 01:22:28,940 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | cpuconsumptiontime: 18 s
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | nevents: 0
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | neventsw: 0
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | pid: 3840180
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | pgrp: 3840180
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | corecount: 8
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | event service: False
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | sizes: {0: 2397225, 1: 2397480, 2: 2397480, 13: 2397508, 15: 2397826, 23: 2397854, 80: 2421242, 82: 2425534, 83: 2425590, 212: 2425784}
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | --------------------------------------------------
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | 
[2025-07-23 18:23:02] 2025-07-24 01:22:28,941 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-23 18:23:02] 2025-07-24 01:22:28,960 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,960 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,961 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,961 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,961 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,961 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,963 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,963 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,963 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,963 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,963 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 18:23:02] 2025-07-24 01:22:28,963 | INFO     | job 6744129945 has completed (purged errors)
[2025-07-23 18:23:02] 2025-07-24 01:22:28,964 | INFO     | overall cleanup function is called
[2025-07-23 18:23:02] 2025-07-24 01:22:29,643 | INFO     | PID=3833851 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 18:23:02] 2025-07-24 01:22:29,643 | INFO     | .. there are 26 such processes running
[2025-07-23 18:23:02] 2025-07-24 01:22:29,970 | INFO     | --- collectZombieJob: --- 10, [3840180]
[2025-07-23 18:23:02] 2025-07-24 01:22:29,971 | INFO     | zombie collector waiting for pid 3840180
[2025-07-23 18:23:02] 2025-07-24 01:22:29,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 18:23:02] 2025-07-24 01:22:29,971 | INFO     | collected zombie processes
[2025-07-23 18:23:02] 2025-07-24 01:22:29,971 | INFO     | will attempt to kill all subprocesses of pid=3840180
[2025-07-23 18:23:02] 2025-07-24 01:22:30,204 | INFO     | process IDs to be killed: [3840180] (in reverse order)
[2025-07-23 18:23:02] 2025-07-24 01:22:30,268 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 18:23:02] 2025-07-24 01:22:30,269 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 18:23:02] 2025-07-24 01:22:30,277 | INFO     | did not find any defunct processes belonging to 3840180
[2025-07-23 18:23:02] 2025-07-24 01:22:30,285 | INFO     | did not find any defunct processes belonging to 3840180
[2025-07-23 18:23:02] 2025-07-24 01:22:30,285 | INFO     | ready for new job
[2025-07-23 18:23:02] 2025-07-24 01:22:30,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 18:23:02] 2025-07-24 01:22:30,287 | INFO     | ***************************************
[2025-07-23 18:23:02] 2025-07-24 01:22:30,287 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 18:23:02] 2025-07-24 01:22:30,287 | INFO     | ***************************************
[2025-07-23 18:23:02] 2025-07-24 01:22:30,287 | INFO     | 
[2025-07-23 18:23:02] 2025-07-24 01:22:30,303 | INFO     | architecture information:
[2025-07-23 18:23:02] 2025-07-24 01:22:30,307 | INFO     | executing command: cat /etc/os-release
[2025-07-23 18:23:02] 2025-07-24 01:22:30,354 | INFO     | cat /etc/os-release:
[2025-07-23 18:23:02] NAME="CentOS Linux"
[2025-07-23 18:23:02] VERSION="7 (Core)"
[2025-07-23 18:23:02] ID="centos"
[2025-07-23 18:23:02] ID_LIKE="rhel fedora"
[2025-07-23 18:23:02] VERSION_ID="7"
[2025-07-23 18:23:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 18:23:02] ANSI_COLOR="0;31"
[2025-07-23 18:23:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 18:23:02] HOME_URL="https://www.centos.org/"
[2025-07-23 18:23:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 18:23:02] 
[2025-07-23 18:23:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 18:23:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 18:23:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 18:23:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 18:23:02] 
[2025-07-23 18:23:02] 2025-07-24 01:22:30,355 | INFO     | ***************************************
[2025-07-23 18:23:02] 2025-07-24 01:22:30,858 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-23 18:23:02] 2025-07-24 01:22:30,982 | INFO     | sufficient remaining disk space (1197815627776 B)
[2025-07-23 18:23:02] 2025-07-24 01:22:30,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 18:23:02] 2025-07-24 01:22:30,983 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 18:23:02] 2025-07-24 01:22:30,983 | INFO     | update_server=False
[2025-07-23 18:23:02] 2025-07-24 01:22:30,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 18:23:02] 2025-07-24 01:22:31,122 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-23 18:23:02] 2025-07-24 01:22:31,122 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-23 18:23:02] 2025-07-24 01:22:31,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 18:23:02] 2025-07-24 01:22:31,123 | INFO     | will abort loop
[2025-07-23 18:23:02] 2025-07-24 01:22:31,202 | INFO     | all payload control threads have been joined
[2025-07-23 18:23:02] 2025-07-24 01:22:31,711 | INFO     | all data control threads have been joined
[2025-07-23 18:23:02] 2025-07-24 01:22:31,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 18:23:02] 2025-07-24 01:22:31,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 18:23:02] 2025-07-24 01:22:31,989 | INFO     | [job] retrieve thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:31,994 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,011 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,130 | INFO     | [job] job monitor thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,208 | INFO     | [payload] control thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,304 | INFO     | all job control threads have been joined
[2025-07-23 18:23:02] 2025-07-24 01:22:32,534 | INFO     | [payload] failed_post thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,716 | INFO     | [data] control thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,812 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,925 | INFO     | [job] validate thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:32,978 | INFO     | [data] copytool_in thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:33,094 | INFO     | [payload] validate_post thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:33,309 | INFO     | [job] control thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:33,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 18:23:02] 2025-07-24 01:22:33,968 | INFO     | [data] copytool_out thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:34,475 | INFO     | [job] queue monitor thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:35,740 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 18:23:02] 2025-07-24 01:22:37,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011012527936)>', '<ExcThread(monitor, started 140010489636608)>']
[2025-07-23 18:23:02] 2025-07-24 01:22:42,395 | INFO     | all workflow threads have been joined
[2025-07-23 18:23:02] 2025-07-24 01:22:42,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 18:23:02] 2025-07-24 01:22:42,396 | INFO     | traces error code: 0
[2025-07-23 18:23:02] 2025-07-24 01:22:42,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 18:23:02] 2025-07-24 01:23:00,660 | INFO     | 260s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | INFO     | PID=3833851 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | INFO     | .. there are 25 such processes running
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 18:23:02] 2025-07-24 01:23:01,950 | INFO     | [monitor] control thread has ended
[2025-07-23 18:23:02] 2025-07-24 01:23:02,188 [wrapper] ==== pilot stdout END ====
[2025-07-23 18:23:02] 2025-07-24 01:23:02,200 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 18:23:02] 2025-07-24 01:23:02,203 [wrapper] pilotpid: 3833851
[2025-07-23 18:23:02] 2025-07-24 01:23:02,205 [wrapper] Pilot exit status: 0
[2025-07-23 18:23:02] 2025-07-24 01:23:02,281 [wrapper] pandaids: 6744129945
[2025-07-23 18:23:02] 2025-07-24 01:23:02,321 [wrapper] cleanup supervisor_pilot 3833857 3833852
[2025-07-23 18:23:02] 2025-07-24 01:23:02,325 [wrapper] Test setup, not cleaning
[2025-07-23 18:23:02] 2025-07-24 01:23:02,327 [wrapper] apfmon messages muted
[2025-07-23 18:23:02] 2025-07-24 01:23:02,329 [wrapper] ==== wrapper stdout END ====
[2025-07-23 18:23:02] 2025-07-24 01:23:02,331 [wrapper] ==== wrapper stderr END ====
[2025-07-23 18:23:02]  *** Error codes and diagnostics ***
[2025-07-23 18:23:02]     "exeErrorCode": 65,
[2025-07-23 18:23:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-23 18:23:02]     "pilotErrorCode": 1305,
[2025-07-23 18:23:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-23 18:23:02]  *** Listing of results directory ***
[2025-07-23 18:23:02] total 340776
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc    530466 Jul 23 17:49 pilot3.tar.gz
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc      5112 Jul 23 18:12 queuedata.json
[2025-07-23 18:23:02] -rwx------. 1 boinc boinc     36292 Jul 23 18:14 runpilot2-wrapper.sh
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc       100 Jul 23 18:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 18:23:02] -rwxr-xr-x. 1 boinc boinc      7986 Jul 23 18:17 run_atlas
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc       105 Jul 23 18:17 job.xml
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc      6448 Jul 23 18:17 init_data.xml
[2025-07-23 18:23:02] -rw-r--r--. 2 boinc boinc 344876278 Jul 23 18:17 EVNT.45697488._000145.pool.root.1
[2025-07-23 18:23:02] -rw-r--r--. 2 boinc boinc     15095 Jul 23 18:17 start_atlas.sh
[2025-07-23 18:23:02] drwxrwx--x. 2 boinc boinc      4096 Jul 23 18:17 shared
[2025-07-23 18:23:02] -rw-r--r--. 2 boinc boinc    542916 Jul 23 18:17 input.tar.gz
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc         0 Jul 23 18:17 boinc_lockfile
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc      2591 Jul 23 18:17 pandaJob.out
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc    979632 Jul 23 18:18 agis_schedconf.cvmfs.json
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc   1593041 Jul 23 18:18 agis_ddmendpoints.agis.ALL.json
[2025-07-23 18:23:02] drwx------. 4 boinc boinc      4096 Jul 23 18:18 pilot3
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc       524 Jul 23 18:20 boinc_task_state.xml
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc       950 Jul 23 18:20 memory_monitor_summary.json
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc     21552 Jul 23 18:20 log.45697490._006392.job.log.tgz.1
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc        95 Jul 23 18:22 pilot_heartbeat.json
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc      8390 Jul 23 18:22 heartbeat.json
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc      8192 Jul 23 18:22 boinc_mmap_file
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc        23 Jul 23 18:22 wrapper_checkpoint.txt
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc       937 Jul 23 18:23 pilotlog.txt
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc     80917 Jul 23 18:23 log.45697490._006392.job.log.1
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc       188 Jul 23 18:23 output.list
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc       620 Jul 23 18:23 runtime_log
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc    122880 Jul 23 18:23 result.tar.gz
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc      8648 Jul 23 18:23 runtime_log.err
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc       647 Jul 23 18:23 3WCODmrizy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD4LLDmfNoy6n.diag
[2025-07-23 18:23:02] -rw-r--r--. 1 boinc boinc     22126 Jul 23 18:23 stderr.txt
[2025-07-23 18:23:02] No HITS result produced
[2025-07-23 18:23:02]  *** Contents of shared directory: ***
[2025-07-23 18:23:02] total 337464
[2025-07-23 18:23:02] -rw-r--r--. 2 boinc boinc 344876278 Jul 23 18:17 ATLAS.root_0
[2025-07-23 18:23:02] -rw-r--r--. 2 boinc boinc     15095 Jul 23 18:17 start_atlas.sh
[2025-07-23 18:23:02] -rw-r--r--. 2 boinc boinc    542916 Jul 23 18:17 input.tar.gz
[2025-07-23 18:23:02] -rw-------. 1 boinc boinc    122880 Jul 23 18:23 result.tar.gz
18:23:03 (3830269): run_atlas exited; CPU time 27.858802
18:23:03 (3830269): called boinc_finish(0)

</stderr_txt>
]]>

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