Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:52:54 (860780): wrapper (7.7.26015): starting
20:52:54 (860780): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 20:52:54] Arguments: --nthreads 8
[2025-07-23 20:52:54] Threads: 8
[2025-07-23 20:52:54] Checking for CVMFS
[2025-07-23 20:52:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 20:52:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 20:52:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 20:52:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 20:52:54] 2.13.1.0 285388 3359 77608 148676 0 188 9615544 40960000 12923 16776704 0 43570140 99.998 148506 22122 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 20:52:54] CVMFS is ok
[2025-07-23 20:52:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 20:52:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 20:52:54] Further information can be found at the LHC@home message board.
[2025-07-23 20:52:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 20:52:54] Checking for apptainer binary...
[2025-07-23 20:52:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 20:52:54] Running /usr/bin/apptainer --version
[2025-07-23 20:52:54] apptainer version 1.4.1-1.el9
[2025-07-23 20:52:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 20:52:54] c-208-36.aglt2.org
[2025-07-23 20:52:54] apptainer works
[2025-07-23 20:52:54] Set ATHENA_PROC_NUMBER=8
[2025-07-23 20:52:54] Set ATHENA_CORE_NUMBER=8
[2025-07-23 20:52:54] Starting ATLAS job with PandaID=6741763112
[2025-07-23 20:52:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 21:58:28]  *** The last 200 lines of the pilot log: ***
[2025-07-23 21:58:28]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-23 21:58:28]  is_altstaged=None
[2025-07-23 21:58:28]  is_tar=False
[2025-07-23 21:58:28]  lfn=log.45697472._002616.job.log.tgz.1
[2025-07-23 21:58:28]  mtime=0
[2025-07-23 21:58:28]  protocol_id=None
[2025-07-23 21:58:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 21:58:28]  replicas=None
[2025-07-23 21:58:28]  scope=mc23_13p6TeV
[2025-07-23 21:58:28]  status=None
[2025-07-23 21:58:28]  status_code=0
[2025-07-23 21:58:28]  storage_token=
[2025-07-23 21:58:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6741763112/log.45697472._002616.job.log.tgz.1
[2025-07-23 21:58:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/30/log.45697472._002616.job.log.tgz.1
[2025-07-23 21:58:28]  workdir=None
[2025-07-23 21:58:28] ]
[2025-07-23 21:58:28] 2025-07-24 01:57:52,950 | INFO     | transferring file log.45697472._002616.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6741763112/log.45697472._002616.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 21:58:28] 2025-07-24 01:57:52,950 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6741763112/log.45697472._002616.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697472._002616.job
[2025-07-23 21:58:28] 2025-07-24 01:57:52,964 | INFO     | adding to output.list: log.45697472._002616.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/30/log.45697472._002616.job.log.tg
[2025-07-23 21:58:28] 2025-07-24 01:57:52,964 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 21:58:28] 2025-07-24 01:57:52,964 | INFO     | summary of transferred files:
[2025-07-23 21:58:28] 2025-07-24 01:57:52,964 | INFO     |  -- lfn=log.45697472._002616.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 21:58:28] 2025-07-24 01:57:52,964 | INFO     | stage-out finished correctly
[2025-07-23 21:58:28] 2025-07-24 01:57:53,036 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 21:58:28] 2025-07-24 01:57:53,066 | INFO     | job 6741763112 has state=finished
[2025-07-23 21:58:28] 2025-07-24 01:57:53,066 | INFO     | preparing for final server update for job 6741763112 in state='finished'
[2025-07-23 21:58:28] 2025-07-24 01:57:53,067 | INFO     | this job has now completed (state=finished)
[2025-07-23 21:58:28] 2025-07-24 01:57:53,067 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 21:58:28] 2025-07-24 01:57:53,067 | INFO     | log transfer has been attempted: DONE
[2025-07-23 21:58:28] 2025-07-24 01:57:53,067 | INFO     | job 6741763112 has finished - writing final server update
[2025-07-23 21:58:28] 2025-07-24 01:57:53,067 | INFO     | total number of processed events: 400 (read)
[2025-07-23 21:58:28] 2025-07-24 01:57:53,068 | INFO     | executing command: lscpu
[2025-07-23 21:58:28] 2025-07-24 01:57:53,106 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 21:58:28] 2025-07-24 01:57:54,111 | INFO     | PID=865036 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 21:58:28] 2025-07-24 01:57:54,111 | INFO     | .. there are 6 such processes running
[2025-07-23 21:58:28] 2025-07-24 01:57:54,901 | INFO     | monitor loop #290: job 0:6741763112 is in state 'finished'
[2025-07-23 21:58:28] 2025-07-24 01:57:54,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,573 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 21:58:28] 2025-07-24 01:57:55,576 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3468.749695312497
[2025-07-23 21:58:28] 2025-07-24 01:57:55,584 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741763112/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | INFO     | extracted standard info from prmon json
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | INFO     | fitting pss+swap vs Time
[2025-07-23 21:58:28] 2025-07-24 01:57:55,585 | INFO     | sum of square deviations: 57407588.0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | sum of deviations: -385825.0000000186
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | mean x: 1753320423.0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | mean y: 2589894.8421052634
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | -- intersect: 14373613.262813127
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | intersect: 14373613.262813127
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | chi2: 0.0016326853083513497
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | -- intersect: 14373613.262813127
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | current memory leak: -0.01 B/s (using 57 data points, chi2=0.00)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | could have reported an average CPU frequency of 3691 MHz (6 samples)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | ..............................
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . Timing measurements:
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . get job = 0 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . initial setup = 2 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . payload setup = 5 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . stage-in = 0 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . payload execution = 3863 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . stage-out = 0 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | . log creation = 0 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,586 | INFO     | ..............................
[2025-07-23 21:58:28] 2025-07-24 01:57:55,616 | INFO     | 
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | job summary report
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | --------------------------------------------------
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | PanDA job id: 6741763112
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | task id: 45697472
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | errors: (none)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | pilot state: finished 
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | transexitcode: 0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | exeerrorcode: 0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | exeerrordiag: 
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | exitcode: 0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | exitmsg: OK
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | cpuconsumptiontime: 29231 s
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | nevents: 400
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | neventsw: 0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | pid: 874215
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | pgrp: 874215
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | corecount: 8
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | event service: False
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | sizes: {0: 2397534, 4: 2397796, 11: 2397824, 3872: 2423732, 3873: 2432786, 3876: 2432924}
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | --------------------------------------------------
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | 
[2025-07-23 21:58:28] 2025-07-24 01:57:55,617 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 21:58:28] 2025-07-24 01:57:55,632 | INFO     | job 6741763112 has completed (purged errors)
[2025-07-23 21:58:28] 2025-07-24 01:57:55,632 | INFO     | overall cleanup function is called
[2025-07-23 21:58:28] 2025-07-24 01:57:56,639 | INFO     | --- collectZombieJob: --- 10, [874215]
[2025-07-23 21:58:28] 2025-07-24 01:57:56,639 | INFO     | zombie collector waiting for pid 874215
[2025-07-23 21:58:28] 2025-07-24 01:57:56,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 21:58:28] 2025-07-24 01:57:56,639 | INFO     | collected zombie processes
[2025-07-23 21:58:28] 2025-07-24 01:57:56,639 | INFO     | will attempt to kill all subprocesses of pid=874215
[2025-07-23 21:58:28] 2025-07-24 01:57:56,817 | INFO     | process IDs to be killed: [874215] (in reverse order)
[2025-07-23 21:58:28] 2025-07-24 01:57:56,899 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 21:58:28] 2025-07-24 01:57:56,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 21:58:28] 2025-07-24 01:57:56,907 | INFO     | did not find any defunct processes belonging to 874215
[2025-07-23 21:58:28] 2025-07-24 01:57:56,914 | INFO     | did not find any defunct processes belonging to 874215
[2025-07-23 21:58:28] 2025-07-24 01:57:56,914 | INFO     | ready for new job
[2025-07-23 21:58:28] 2025-07-24 01:57:56,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 21:58:28] 2025-07-24 01:57:56,915 | INFO     | ***************************************
[2025-07-23 21:58:28] 2025-07-24 01:57:56,915 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 21:58:28] 2025-07-24 01:57:56,915 | INFO     | ***************************************
[2025-07-23 21:58:28] 2025-07-24 01:57:56,915 | INFO     | 
[2025-07-23 21:58:28] 2025-07-24 01:57:56,918 | INFO     | architecture information:
[2025-07-23 21:58:28] 2025-07-24 01:57:56,918 | INFO     | executing command: cat /etc/os-release
[2025-07-23 21:58:28] 2025-07-24 01:57:56,930 | INFO     | cat /etc/os-release:
[2025-07-23 21:58:28] NAME="CentOS Linux"
[2025-07-23 21:58:28] VERSION="7 (Core)"
[2025-07-23 21:58:28] ID="centos"
[2025-07-23 21:58:28] ID_LIKE="rhel fedora"
[2025-07-23 21:58:28] VERSION_ID="7"
[2025-07-23 21:58:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 21:58:28] ANSI_COLOR="0;31"
[2025-07-23 21:58:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 21:58:28] HOME_URL="https://www.centos.org/"
[2025-07-23 21:58:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 21:58:28] 
[2025-07-23 21:58:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 21:58:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 21:58:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 21:58:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 21:58:28] 
[2025-07-23 21:58:28] 2025-07-24 01:57:56,931 | INFO     | ***************************************
[2025-07-23 21:58:28] 2025-07-24 01:57:57,434 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-23 21:58:28] 2025-07-24 01:57:57,446 | INFO     | sufficient remaining disk space (167354826752 B)
[2025-07-23 21:58:28] 2025-07-24 01:57:57,446 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 21:58:28] 2025-07-24 01:57:57,446 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 21:58:28] 2025-07-24 01:57:57,446 | INFO     | update_server=False
[2025-07-23 21:58:28] 2025-07-24 01:57:57,446 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 21:58:28] 2025-07-24 01:57:57,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 21:58:28] 2025-07-24 01:57:57,686 | INFO     | all data control threads have been joined
[2025-07-23 21:58:28] 2025-07-24 01:57:58,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 21:58:28] 2025-07-24 01:57:58,409 | INFO     | aborting loop
[2025-07-23 21:58:28] 2025-07-24 01:57:58,451 | INFO     | [job] retrieve thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:58,451 | INFO     | [job] queue monitor thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:58,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 21:58:28] 2025-07-24 01:57:58,553 | INFO     | all job control threads have been joined
[2025-07-23 21:58:28] 2025-07-24 01:57:58,692 | INFO     | [data] control thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:58,797 | INFO     | [data] copytool_in thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:58,924 | INFO     | all payload control threads have been joined
[2025-07-23 21:58:28] 2025-07-24 01:57:58,928 | INFO     | [job] validate thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:58,932 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 21:58:28] 2025-07-24 01:57:59,171 | INFO     | [payload] failed_post thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,271 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,302 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,325 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,414 | INFO     | [job] job monitor thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,558 | INFO     | [job] control thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,741 | INFO     | [payload] validate_post thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:57:59,929 | INFO     | [payload] control thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:58:00,505 | INFO     | [data] copytool_out thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:58:03,077 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 21:58:28] 2025-07-24 01:58:04,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618550359872)>', '<ExcThread(monitor, started 140618185545472)>']
[2025-07-23 21:58:28] 2025-07-24 01:58:09,090 | INFO     | all workflow threads have been joined
[2025-07-23 21:58:28] 2025-07-24 01:58:09,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 21:58:28] 2025-07-24 01:58:09,091 | INFO     | traces error code: 0
[2025-07-23 21:58:28] 2025-07-24 01:58:09,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 21:58:28] 2025-07-24 01:58:28,414 | INFO     | PID=865036 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 21:58:28] 2025-07-24 01:58:28,415 | INFO     | .. there are 6 such processes running
[2025-07-23 21:58:28] 2025-07-24 01:58:28,415 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 21:58:28] 2025-07-24 01:58:28,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 21:58:28] 2025-07-24 01:58:28,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 21:58:28] 2025-07-24 01:58:28,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 21:58:28] 2025-07-24 01:58:28,415 | INFO     | [monitor] control thread has ended
[2025-07-23 21:58:28] 2025-07-24 01:58:28,468 [wrapper] ==== pilot stdout END ====
[2025-07-23 21:58:28] 2025-07-24 01:58:28,470 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 21:58:28] 2025-07-24 01:58:28,472 [wrapper] pilotpid: 865036
[2025-07-23 21:58:28] 2025-07-24 01:58:28,474 [wrapper] Pilot exit status: 0
[2025-07-23 21:58:28] 2025-07-24 01:58:28,480 [wrapper] pandaids: 6741763112
[2025-07-23 21:58:28] 2025-07-24 01:58:28,539 [wrapper] cleanup supervisor_pilot 1071272 865037
[2025-07-23 21:58:28] 2025-07-24 01:58:28,541 [wrapper] Test setup, not cleaning
[2025-07-23 21:58:28] 2025-07-24 01:58:28,543 [wrapper] apfmon messages muted
[2025-07-23 21:58:28] 2025-07-24 01:58:28,544 [wrapper] ==== wrapper stdout END ====
[2025-07-23 21:58:28] 2025-07-24 01:58:28,546 [wrapper] ==== wrapper stderr END ====
[2025-07-23 21:58:28]  *** Error codes and diagnostics ***
[2025-07-23 21:58:28]     "exeErrorCode": 0,
[2025-07-23 21:58:28]     "exeErrorDiag": "",
[2025-07-23 21:58:28]     "pilotErrorCode": 0,
[2025-07-23 21:58:28]     "pilotErrorDiag": "",
[2025-07-23 21:58:28]  *** Listing of results directory ***
[2025-07-23 21:58:28] total 611740
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 05:40 pilot3.tar.gz
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 06:11 queuedata.json
[2025-07-23 21:58:28] -rwx------. 1 boincer umatlas     36292 Jul 22 06:13 runpilot2-wrapper.sh
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas       100 Jul 23 20:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 21:58:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 20:52 run_atlas
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas       105 Jul 23 20:52 job.xml
[2025-07-23 21:58:28] -rw-r--r--. 2 boincer umatlas 330656330 Jul 23 20:52 EVNT.45697470._000132.pool.root.1
[2025-07-23 21:58:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 20:52 start_atlas.sh
[2025-07-23 21:58:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 20:52 shared
[2025-07-23 21:58:28] -rw-r--r--. 2 boincer umatlas    542904 Jul 23 20:52 input.tar.gz
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas         0 Jul 23 20:52 boinc_lockfile
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas      2612 Jul 23 20:52 pandaJob.out
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas    979632 Jul 23 20:53 agis_schedconf.cvmfs.json
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas   1593041 Jul 23 20:53 agis_ddmendpoints.agis.ALL.json
[2025-07-23 21:58:28] drwx------. 4 boincer umatlas      4096 Jul 23 20:53 pilot3
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas 290488475 Jul 23 21:57 HITS.45697472._002616.pool.root.1
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas       529 Jul 23 21:57 boinc_task_state.xml
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas      1028 Jul 23 21:57 memory_monitor_summary.json
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas    304842 Jul 23 21:57 log.45697472._002616.job.log.tgz.1
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas      7760 Jul 23 21:57 heartbeat.json
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas      7173 Jul 23 21:58 init_data.xml
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas        27 Jul 23 21:58 wrapper_checkpoint.txt
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 21:58 boinc_mmap_file
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas        95 Jul 23 21:58 pilot_heartbeat.json
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas       821 Jul 23 21:58 pilotlog.txt
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas    393783 Jul 23 21:58 log.45697472._002616.job.log.1
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas       357 Jul 23 21:58 output.list
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas       620 Jul 23 21:58 runtime_log
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas    716800 Jul 23 21:58 result.tar.gz
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas      8660 Jul 23 21:58 runtime_log.err
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas       652 Jul 23 21:58 5CRKDmvAPy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmC6ILDmN4CSfn.diag
[2025-07-23 21:58:28] -rw-r--r--. 1 boincer umatlas     21494 Jul 23 21:58 stderr.txt
[2025-07-23 21:58:28] HITS file was successfully produced:
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas 290488475 Jul 23 21:57 shared/HITS.pool.root.1
[2025-07-23 21:58:28]  *** Contents of shared directory: ***
[2025-07-23 21:58:28] total 607848
[2025-07-23 21:58:28] -rw-r--r--. 2 boincer umatlas 330656330 Jul 23 20:52 ATLAS.root_0
[2025-07-23 21:58:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 20:52 start_atlas.sh
[2025-07-23 21:58:28] -rw-r--r--. 2 boincer umatlas    542904 Jul 23 20:52 input.tar.gz
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas 290488475 Jul 23 21:57 HITS.pool.root.1
[2025-07-23 21:58:28] -rw-------. 1 boincer umatlas    716800 Jul 23 21:58 result.tar.gz
21:58:30 (860780): run_atlas exited; CPU time 29315.138640
21:58:30 (860780): called boinc_finish(0)

</stderr_txt>
]]>

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