Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:22:55 (551025): wrapper (7.7.26015): starting
21:22:55 (551025): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 21:22:55] Arguments: --nthreads 8
[2025-07-23 21:22:55] Threads: 8
[2025-07-23 21:22:55] Checking for CVMFS
[2025-07-23 21:22:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 21:22:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 21:22:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 21:22:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 21:22:55] 2.13.1.0 4026694 3188 82436 148677 1 57 40115924 40960000 12923 16776704 0 44339633 99.998 113928 54199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 21:22:55] CVMFS is ok
[2025-07-23 21:22:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 21:22:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 21:22:55] Further information can be found at the LHC@home message board.
[2025-07-23 21:22:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 21:22:55] Checking for apptainer binary...
[2025-07-23 21:22:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 21:22:55] Running /usr/bin/apptainer --version
[2025-07-23 21:22:55] apptainer version 1.4.1-1.el9
[2025-07-23 21:22:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 21:22:55] c-208-38.aglt2.org
[2025-07-23 21:22:55] apptainer works
[2025-07-23 21:22:55] Set ATHENA_PROC_NUMBER=8
[2025-07-23 21:22:55] Set ATHENA_CORE_NUMBER=8
[2025-07-23 21:22:55] Starting ATLAS job with PandaID=6743231983
[2025-07-23 21:22:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 22:16:45]  *** The last 200 lines of the pilot log: ***
[2025-07-23 22:16:45]  is_tar=False
[2025-07-23 22:16:45]  lfn=log.45668889._000752.job.log.tgz.1
[2025-07-23 22:16:45]  mtime=0
[2025-07-23 22:16:45]  protocol_id=None
[2025-07-23 22:16:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 22:16:45]  replicas=None
[2025-07-23 22:16:45]  scope=mc23_13p6TeV
[2025-07-23 22:16:45]  status=None
[2025-07-23 22:16:45]  status_code=0
[2025-07-23 22:16:45]  storage_token=
[2025-07-23 22:16:45]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6743231983/log.45668889._000752.job.log.tgz.1
[2025-07-23 22:16:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/50/log.45668889._000752.job.log.tgz.1
[2025-07-23 22:16:45]  workdir=None
[2025-07-23 22:16:45] ]
[2025-07-23 22:16:45] 2025-07-24 02:16:10,374 | INFO     | transferring file log.45668889._000752.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6743231983/log.45668889._000752.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-23 22:16:45] 2025-07-24 02:16:10,374 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6743231983/log.45668889._000752.job.log.tgz.1 /tmp/boinchome/slots/10/log.45668889._000752.j
[2025-07-23 22:16:45] 2025-07-24 02:16:10,386 | INFO     | adding to output.list: log.45668889._000752.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/50/log.45668889._000752.job.log.tg
[2025-07-23 22:16:45] 2025-07-24 02:16:10,386 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 22:16:45] 2025-07-24 02:16:10,386 | INFO     | summary of transferred files:
[2025-07-23 22:16:45] 2025-07-24 02:16:10,386 | INFO     |  -- lfn=log.45668889._000752.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 22:16:45] 2025-07-24 02:16:10,386 | INFO     | stage-out finished correctly
[2025-07-23 22:16:45] 2025-07-24 02:16:10,439 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 22:16:45] 2025-07-24 02:16:11,296 | INFO     | job 6743231983 has state=finished
[2025-07-23 22:16:45] 2025-07-24 02:16:11,296 | INFO     | preparing for final server update for job 6743231983 in state='finished'
[2025-07-23 22:16:45] 2025-07-24 02:16:11,297 | INFO     | this job has now completed (state=finished)
[2025-07-23 22:16:45] 2025-07-24 02:16:11,297 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 22:16:45] 2025-07-24 02:16:11,297 | INFO     | log transfer has been attempted: DONE
[2025-07-23 22:16:45] 2025-07-24 02:16:11,297 | INFO     | job 6743231983 has finished - writing final server update
[2025-07-23 22:16:45] 2025-07-24 02:16:11,297 | INFO     | total number of processed events: 400 (read)
[2025-07-23 22:16:45] 2025-07-24 02:16:11,297 | INFO     | executing command: lscpu
[2025-07-23 22:16:45] 2025-07-24 02:16:11,338 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 22:16:45] 2025-07-24 02:16:12,029 | INFO     | 3189s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-23 22:16:45] 2025-07-24 02:16:13,224 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 22:16:45] 2025-07-24 02:16:13,228 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3399.6950781249975
[2025-07-23 22:16:45] 2025-07-24 02:16:13,236 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6743231983/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,236 | INFO     | extracted standard info from prmon json
[2025-07-23 22:16:45] 2025-07-24 02:16:13,236 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 22:16:45] 2025-07-24 02:16:13,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 22:16:45] 2025-07-24 02:16:13,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 22:16:45] 2025-07-24 02:16:13,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | fitting pss+swap vs Time
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | sum of square deviations: 28242390.0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | sum of deviations: -1207739000.0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | mean x: 1753321856.0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | mean y: 2647863.466666667
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | -- intersect: 74980551116.11574
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | intersect: 74980551116.11574
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | chi2: 0.010128661174368437
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | -- intersect: 74980551116.11574
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | current memory leak: -42.76 B/s (using 45 data points, chi2=0.01)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | could have reported an average CPU frequency of 3682 MHz (5 samples)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | ..............................
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . Timing measurements:
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . get job = 0 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . initial setup = 2 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . payload setup = 5 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . stage-in = 0 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . payload execution = 3162 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . stage-out = 0 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | . log creation = 0 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,238 | INFO     | ..............................
[2025-07-23 22:16:45] 2025-07-24 02:16:13,271 | INFO     | 
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | job summary report
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | --------------------------------------------------
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | PanDA job id: 6743231983
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | task id: 45668889
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | errors: (none)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | pilot state: finished 
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | transexitcode: 0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | exeerrorcode: 0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | exeerrordiag: 
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | exitcode: 0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | exitmsg: OK
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | cpuconsumptiontime: 23716 s
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | nevents: 400
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | neventsw: 0
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | pid: 561050
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | pgrp: 561050
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | corecount: 8
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | event service: False
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | sizes: {0: 2397370, 4: 2397632, 11: 2397660, 3171: 2423171, 3172: 2432227, 3174: 2432397}
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | --------------------------------------------------
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | 
[2025-07-23 22:16:45] 2025-07-24 02:16:13,272 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-23 22:16:45] 2025-07-24 02:16:13,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | job 6743231983 has completed (purged errors)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,286 | INFO     | overall cleanup function is called
[2025-07-23 22:16:45] 2025-07-24 02:16:13,521 | WARNING  | process 561050 can no longer be monitored (due to stat problems) - aborting
[2025-07-23 22:16:45] 2025-07-24 02:16:13,655 | INFO     | using path: /tmp/boinchome/slots/10/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 22:16:45] 2025-07-24 02:16:13,826 | INFO     | number of running child processes to parent process 561050: 1
[2025-07-23 22:16:45] 2025-07-24 02:16:13,826 | INFO     | maximum number of monitored processes: 6
[2025-07-23 22:16:45] 2025-07-24 02:16:13,827 | INFO     | aborting job monitoring since job object (job id=6743231983) has expired
[2025-07-23 22:16:45] 2025-07-24 02:16:14,293 | INFO     | --- collectZombieJob: --- 10, [561050]
[2025-07-23 22:16:45] 2025-07-24 02:16:14,293 | INFO     | zombie collector waiting for pid 561050
[2025-07-23 22:16:45] 2025-07-24 02:16:14,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 22:16:45] 2025-07-24 02:16:14,293 | INFO     | collected zombie processes
[2025-07-23 22:16:45] 2025-07-24 02:16:14,293 | INFO     | will attempt to kill all subprocesses of pid=561050
[2025-07-23 22:16:45] 2025-07-24 02:16:14,466 | INFO     | process IDs to be killed: [561050] (in reverse order)
[2025-07-23 22:16:45] 2025-07-24 02:16:14,536 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 22:16:45] 2025-07-24 02:16:14,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 22:16:45] 2025-07-24 02:16:14,544 | INFO     | did not find any defunct processes belonging to 561050
[2025-07-23 22:16:45] 2025-07-24 02:16:14,551 | INFO     | did not find any defunct processes belonging to 561050
[2025-07-23 22:16:45] 2025-07-24 02:16:14,551 | INFO     | ready for new job
[2025-07-23 22:16:45] 2025-07-24 02:16:14,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 22:16:45] 2025-07-24 02:16:14,552 | INFO     | ***************************************
[2025-07-23 22:16:45] 2025-07-24 02:16:14,552 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 22:16:45] 2025-07-24 02:16:14,552 | INFO     | ***************************************
[2025-07-23 22:16:45] 2025-07-24 02:16:14,552 | INFO     | 
[2025-07-23 22:16:45] 2025-07-24 02:16:14,555 | INFO     | architecture information:
[2025-07-23 22:16:45] 2025-07-24 02:16:14,555 | INFO     | executing command: cat /etc/os-release
[2025-07-23 22:16:45] 2025-07-24 02:16:14,566 | INFO     | cat /etc/os-release:
[2025-07-23 22:16:45] NAME="CentOS Linux"
[2025-07-23 22:16:45] VERSION="7 (Core)"
[2025-07-23 22:16:45] ID="centos"
[2025-07-23 22:16:45] ID_LIKE="rhel fedora"
[2025-07-23 22:16:45] VERSION_ID="7"
[2025-07-23 22:16:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 22:16:45] ANSI_COLOR="0;31"
[2025-07-23 22:16:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 22:16:45] HOME_URL="https://www.centos.org/"
[2025-07-23 22:16:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 22:16:45] 
[2025-07-23 22:16:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 22:16:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 22:16:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 22:16:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 22:16:45] 
[2025-07-23 22:16:45] 2025-07-24 02:16:14,566 | INFO     | ***************************************
[2025-07-23 22:16:45] 2025-07-24 02:16:15,069 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-23 22:16:45] 2025-07-24 02:16:15,081 | INFO     | sufficient remaining disk space (168729509888 B)
[2025-07-23 22:16:45] 2025-07-24 02:16:15,081 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 22:16:45] 2025-07-24 02:16:15,081 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 22:16:45] 2025-07-24 02:16:15,081 | INFO     | update_server=False
[2025-07-23 22:16:45] 2025-07-24 02:16:15,081 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 22:16:45] 2025-07-24 02:16:15,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 22:16:45] 2025-07-24 02:16:15,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 22:16:45] 2025-07-24 02:16:15,082 | INFO     | aborting loop
[2025-07-23 22:16:45] 2025-07-24 02:16:15,900 | INFO     | all data control threads have been joined
[2025-07-23 22:16:45] 2025-07-24 02:16:15,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 22:16:45] 2025-07-24 02:16:16,086 | INFO     | [job] retrieve thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:16,087 | INFO     | [job] queue monitor thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:16,087 | INFO     | [job] job monitor thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:16,241 | INFO     | all job control threads have been joined
[2025-07-23 22:16:45] 2025-07-24 02:16:16,437 | INFO     | all payload control threads have been joined
[2025-07-23 22:16:45] 2025-07-24 02:16:16,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 22:16:45] 2025-07-24 02:16:16,612 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:16,906 | INFO     | [data] control thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,033 | INFO     | [data] copytool_in thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,034 | INFO     | [payload] failed_post thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,247 | INFO     | [job] control thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,389 | INFO     | [job] validate thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,442 | INFO     | [payload] control thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,475 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,478 | INFO     | [payload] validate_post thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,567 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:17,928 | INFO     | [data] copytool_out thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:20,482 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 22:16:45] 2025-07-24 02:16:22,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298541197120)>', '<ExcThread(monitor, started 140297438746368)>']
[2025-07-23 22:16:45] 2025-07-24 02:16:27,601 | INFO     | all workflow threads have been joined
[2025-07-23 22:16:45] 2025-07-24 02:16:27,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 22:16:45] 2025-07-24 02:16:27,601 | INFO     | traces error code: 0
[2025-07-23 22:16:45] 2025-07-24 02:16:27,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 22:16:45] 2025-07-24 02:16:45,329 | INFO     | PID=554632 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 22:16:45] 2025-07-24 02:16:45,330 | INFO     | .. there are 4 such processes running
[2025-07-23 22:16:45] 2025-07-24 02:16:45,330 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 22:16:45] 2025-07-24 02:16:45,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 22:16:45] 2025-07-24 02:16:45,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 22:16:45] 2025-07-24 02:16:45,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 22:16:45] 2025-07-24 02:16:45,330 | INFO     | [monitor] control thread has ended
[2025-07-23 22:16:45] 2025-07-24 02:16:45,398 [wrapper] ==== pilot stdout END ====
[2025-07-23 22:16:45] 2025-07-24 02:16:45,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 22:16:45] 2025-07-24 02:16:45,402 [wrapper] pilotpid: 554632
[2025-07-23 22:16:45] 2025-07-24 02:16:45,404 [wrapper] Pilot exit status: 0
[2025-07-23 22:16:45] 2025-07-24 02:16:45,411 [wrapper] pandaids: 6743231983
[2025-07-23 22:16:45] 2025-07-24 02:16:45,462 [wrapper] cleanup supervisor_pilot  691951 554633
[2025-07-23 22:16:45] 2025-07-24 02:16:45,464 [wrapper] Test setup, not cleaning
[2025-07-23 22:16:45] 2025-07-24 02:16:45,466 [wrapper] apfmon messages muted
[2025-07-23 22:16:45] 2025-07-24 02:16:45,467 [wrapper] ==== wrapper stdout END ====
[2025-07-23 22:16:45] 2025-07-24 02:16:45,469 [wrapper] ==== wrapper stderr END ====
[2025-07-23 22:16:45]  *** Error codes and diagnostics ***
[2025-07-23 22:16:45]     "exeErrorCode": 0,
[2025-07-23 22:16:45]     "exeErrorDiag": "",
[2025-07-23 22:16:45]     "pilotErrorCode": 0,
[2025-07-23 22:16:45]     "pilotErrorDiag": "",
[2025-07-23 22:16:45]  *** Listing of results directory ***
[2025-07-23 22:16:45] total 520596
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 12:03 pilot3.tar.gz
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 12:10 queuedata.json
[2025-07-23 22:16:45] -rwx------. 1 boincer umatlas     36292 Jul 23 12:11 runpilot2-wrapper.sh
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas       100 Jul 23 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 22:16:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 21:22 run_atlas
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas       105 Jul 23 21:22 job.xml
[2025-07-23 22:16:45] -rw-r--r--. 2 boincer umatlas 303035602 Jul 23 21:22 EVNT.45668886._000014.pool.root.1
[2025-07-23 22:16:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 21:22 start_atlas.sh
[2025-07-23 22:16:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 21:22 shared
[2025-07-23 22:16:45] -rw-r--r--. 2 boincer umatlas    542884 Jul 23 21:22 input.tar.gz
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas         0 Jul 23 21:22 boinc_lockfile
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas      2538 Jul 23 21:22 pandaJob.out
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas    979640 Jul 23 21:23 agis_schedconf.cvmfs.json
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas   1593041 Jul 23 21:23 agis_ddmendpoints.agis.ALL.json
[2025-07-23 22:16:45] drwx------. 4 boincer umatlas      4096 Jul 23 21:23 pilot3
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas      7174 Jul 23 22:12 init_data.xml
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas       530 Jul 23 22:15 boinc_task_state.xml
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas 224923671 Jul 23 22:15 HITS.45668889._000752.pool.root.1
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas      1025 Jul 23 22:16 memory_monitor_summary.json
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas        95 Jul 23 22:16 pilot_heartbeat.json
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas    296244 Jul 23 22:16 log.45668889._000752.job.log.tgz.1
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas      7757 Jul 23 22:16 heartbeat.json
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas        27 Jul 23 22:16 wrapper_checkpoint.txt
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 22:16 boinc_mmap_file
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas       821 Jul 23 22:16 pilotlog.txt
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas    331611 Jul 23 22:16 log.45668889._000752.job.log.1
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas       357 Jul 23 22:16 output.list
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas       620 Jul 23 22:16 runtime_log
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas    645120 Jul 23 22:16 result.tar.gz
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas      8674 Jul 23 22:16 runtime_log.err
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas       651 Jul 23 22:16 3y5KDmuEry7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGTwKDmicjVkm.diag
[2025-07-23 22:16:45] -rw-r--r--. 1 boincer umatlas     21563 Jul 23 22:16 stderr.txt
[2025-07-23 22:16:45] HITS file was successfully produced:
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas 224923671 Jul 23 22:15 shared/HITS.pool.root.1
[2025-07-23 22:16:45]  *** Contents of shared directory: ***
[2025-07-23 22:16:45] total 516776
[2025-07-23 22:16:45] -rw-r--r--. 2 boincer umatlas 303035602 Jul 23 21:22 ATLAS.root_0
[2025-07-23 22:16:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 21:22 start_atlas.sh
[2025-07-23 22:16:45] -rw-r--r--. 2 boincer umatlas    542884 Jul 23 21:22 input.tar.gz
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas 224923671 Jul 23 22:15 HITS.pool.root.1
[2025-07-23 22:16:45] -rw-------. 1 boincer umatlas    645120 Jul 23 22:16 result.tar.gz
22:16:47 (551025): run_atlas exited; CPU time 23785.214040
22:16:47 (551025): called boinc_finish(0)

</stderr_txt>
]]>

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