Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:23:45 (2946691): wrapper (7.7.26015): starting
04:23:45 (2946691): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 04:23:45] Arguments: --nthreads 12
[2025-07-25 04:23:45] Threads: 12
[2025-07-25 04:23:45] Checking for CVMFS
[2025-07-25 04:23:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 04:23:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 04:23:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 04:23:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 04:23:46] 2.13.1.0 50093 4268 64960 148727 1 188 2493725 4096000 958 130560 0 7688563 99.995 164234 290 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-25 04:23:46] CVMFS is ok
[2025-07-25 04:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 04:23:46] Checking for apptainer binary...
[2025-07-25 04:23:46] apptainer is not installed, using version from CVMFS
[2025-07-25 04:23:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 04:23:46] ryzen7
[2025-07-25 04:23:46] apptainer works
[2025-07-25 04:23:46] Set ATHENA_PROC_NUMBER=12
[2025-07-25 04:23:46] Set ATHENA_CORE_NUMBER=12
[2025-07-25 04:23:46] Starting ATLAS job with PandaID=6742964617
[2025-07-25 04:23:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 06:30:35]  *** The last 200 lines of the pilot log: ***
[2025-07-25 06:30:36] 2025-07-25 06:30:01,247 | INFO     | executing command: lscpu
[2025-07-25 06:30:36] 2025-07-25 06:30:01,282 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 06:30:36] 2025-07-25 06:30:02,557 | INFO     | monitor loop #557: job 0:6742964617 is in state 'finished'
[2025-07-25 06:30:36] 2025-07-25 06:30:02,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,628 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 06:30:36] 2025-07-25 06:30:03,630 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4138.774
[2025-07-25 06:30:36] 2025-07-25 06:30:03,632 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6742964617/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,632 | INFO     | extracted standard info from prmon json
[2025-07-25 06:30:36] 2025-07-25 06:30:03,632 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 06:30:36] 2025-07-25 06:30:03,633 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 06:30:36] 2025-07-25 06:30:03,633 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 06:30:36] 2025-07-25 06:30:03,633 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 06:30:36] 2025-07-25 06:30:03,634 | INFO     | fitting pss+swap vs Time
[2025-07-25 06:30:36] 2025-07-25 06:30:03,635 | INFO     | sum of square deviations: 591173875.0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,635 | INFO     | sum of deviations: 6731767331.500001
[2025-07-25 06:30:36] 2025-07-25 06:30:03,635 | INFO     | mean x: 1753421198.5
[2025-07-25 06:30:36] 2025-07-25 06:30:03,635 | INFO     | mean y: 2771813.8467741935
[2025-07-25 06:30:36] 2025-07-25 06:30:03,635 | INFO     | -- intersect: -19963644229.862663
[2025-07-25 06:30:36] 2025-07-25 06:30:03,635 | INFO     | intersect: -19963644229.862663
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | chi2: 1.252540263197757
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | sum of square deviations: 522502820.0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | sum of deviations: 6786654430.000001
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | mean x: 1753421046.0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | mean y: 2771936.277310924
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | -- intersect: -22771962005.81153
[2025-07-25 06:30:36] 2025-07-25 06:30:03,636 | INFO     | intersect: -22771962005.81153
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | chi2: 1.2542062235389484
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | current chi2=1.2542062235389484 (change=-0.1330065300207005 %)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | right removable region: 118
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | sum of square deviations: 522502820.0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | sum of deviations: -11072174721.000004
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | mean x: 1753421351.0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | mean y: 2810592.1092436975
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | -- intersect: 37158949879.17352
[2025-07-25 06:30:36] 2025-07-25 06:30:03,637 | INFO     | intersect: 37158949879.17352
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | chi2: 0.02575023784702645
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | current chi2=0.02575023784702645 (change=97.94415887427957 %)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | sum of square deviations: 459366752.5
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | sum of deviations: -11042196820.000004
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | mean x: 1753421503.5
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | mean y: 2810487.50877193
[2025-07-25 06:30:36] 2025-07-25 06:30:03,638 | INFO     | -- intersect: 42151323075.10038
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | intersect: 42151323075.10038
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | chi2: 0.02147377959481932
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | current chi2=0.02147377959481932 (change=16.607451463602544 %)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | left removable region: 20
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | sum of square deviations: 291817564.5
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | sum of deviations: -7962277936.5
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | mean x: 1753421625.5
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | mean y: 2805926.8469387754
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | -- intersect: 47845129421.05393
[2025-07-25 06:30:36] 2025-07-25 06:30:03,639 | INFO     | intersect: 47845129421.05393
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | chi2: 0.01978512410414205
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | -- intersect: 47845129421.05393
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | current memory leak: -27.29 B/s (using 98 data points, chi2=0.02)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | could have reported an average CPU frequency of 3846 MHz (8 samples)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | ..............................
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . Timing measurements:
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . get job = 0 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . initial setup = 1 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . payload setup = 2 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . stage-in = 0 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . payload execution = 7547 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,640 | INFO     | . stage-out = 0 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,641 | INFO     | . log creation = 0 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,641 | INFO     | ..............................
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | 
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | job summary report
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | --------------------------------------------------
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | PanDA job id: 6742964617
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | task id: 45697490
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | errors: (none)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | pilot state: finished 
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | transexitcode: 0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | exeerrorcode: 0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | exeerrordiag: 
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | exitcode: 0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | exitmsg: OK
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | cpuconsumptiontime: 40733 s
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | nevents: 400
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | neventsw: 0
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | pid: 2957103
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | pgrp: 2957103
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | corecount: 12
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | event service: False
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | sizes: {0: 2397548, 2: 2397810, 11: 2397838, 7553: 2425532, 7555: 2434576, 7557: 2434632, 7561: 2434954}
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | --------------------------------------------------
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | 
[2025-07-25 06:30:36] 2025-07-25 06:30:03,705 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-25 06:30:36] 2025-07-25 06:30:03,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 06:30:36] 2025-07-25 06:30:03,718 | INFO     | job 6742964617 has completed (purged errors)
[2025-07-25 06:30:36] 2025-07-25 06:30:03,718 | INFO     | overall cleanup function is called
[2025-07-25 06:30:36] 2025-07-25 06:30:04,726 | INFO     | --- collectZombieJob: --- 10, [2957103]
[2025-07-25 06:30:36] 2025-07-25 06:30:04,726 | INFO     | zombie collector waiting for pid 2957103
[2025-07-25 06:30:36] 2025-07-25 06:30:04,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 06:30:36] 2025-07-25 06:30:04,726 | INFO     | collected zombie processes
[2025-07-25 06:30:36] 2025-07-25 06:30:04,726 | INFO     | will attempt to kill all subprocesses of pid=2957103
[2025-07-25 06:30:36] 2025-07-25 06:30:04,794 | INFO     | process IDs to be killed: [2957103] (in reverse order)
[2025-07-25 06:30:36] 2025-07-25 06:30:04,822 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 06:30:36] 2025-07-25 06:30:04,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 06:30:36] 2025-07-25 06:30:04,824 | INFO     | did not find any defunct processes belonging to 2957103
[2025-07-25 06:30:36] 2025-07-25 06:30:04,825 | INFO     | did not find any defunct processes belonging to 2957103
[2025-07-25 06:30:36] 2025-07-25 06:30:04,825 | INFO     | ready for new job
[2025-07-25 06:30:36] 2025-07-25 06:30:04,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 06:30:36] 2025-07-25 06:30:04,826 | INFO     | ***************************************
[2025-07-25 06:30:36] 2025-07-25 06:30:04,826 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 06:30:36] 2025-07-25 06:30:04,826 | INFO     | ***************************************
[2025-07-25 06:30:36] 2025-07-25 06:30:04,826 | INFO     | 
[2025-07-25 06:30:36] 2025-07-25 06:30:04,846 | INFO     | architecture information:
[2025-07-25 06:30:36] 2025-07-25 06:30:04,847 | INFO     | executing command: cat /etc/os-release
[2025-07-25 06:30:36] 2025-07-25 06:30:04,854 | INFO     | cat /etc/os-release:
[2025-07-25 06:30:36] NAME="CentOS Linux"
[2025-07-25 06:30:36] VERSION="7 (Core)"
[2025-07-25 06:30:36] ID="centos"
[2025-07-25 06:30:36] ID_LIKE="rhel fedora"
[2025-07-25 06:30:36] VERSION_ID="7"
[2025-07-25 06:30:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 06:30:36] ANSI_COLOR="0;31"
[2025-07-25 06:30:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 06:30:36] HOME_URL="https://www.centos.org/"
[2025-07-25 06:30:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 06:30:36] 
[2025-07-25 06:30:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 06:30:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 06:30:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 06:30:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 06:30:36] 
[2025-07-25 06:30:36] 2025-07-25 06:30:04,854 | INFO     | ***************************************
[2025-07-25 06:30:36] 2025-07-25 06:30:05,357 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-25 06:30:36] 2025-07-25 06:30:05,364 | INFO     | sufficient remaining disk space (151605215232 B)
[2025-07-25 06:30:36] 2025-07-25 06:30:05,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 06:30:36] 2025-07-25 06:30:05,364 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 06:30:36] 2025-07-25 06:30:05,364 | INFO     | update_server=False
[2025-07-25 06:30:36] 2025-07-25 06:30:05,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 06:30:36] 2025-07-25 06:30:05,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 06:30:36] 2025-07-25 06:30:05,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 06:30:36] 2025-07-25 06:30:05,550 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 06:30:36] 2025-07-25 06:30:06,046 | INFO     | all job control threads have been joined
[2025-07-25 06:30:36] 2025-07-25 06:30:06,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 06:30:36] 2025-07-25 06:30:06,071 | INFO     | aborting loop
[2025-07-25 06:30:36] 2025-07-25 06:30:06,300 | INFO     | all data control threads have been joined
[2025-07-25 06:30:36] 2025-07-25 06:30:06,366 | INFO     | [job] retrieve thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:06,366 | INFO     | [job] queue monitor thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:06,386 | INFO     | [data] copytool_in thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:06,567 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:06,578 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:06,678 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:06,693 | INFO     | all payload control threads have been joined
[2025-07-25 06:30:36] 2025-07-25 06:30:06,910 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,050 | INFO     | [job] control thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,054 | INFO     | [payload] failed_post thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,075 | INFO     | [job] job monitor thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,305 | INFO     | [data] control thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,370 | INFO     | [data] copytool_out thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,566 | INFO     | [job] validate thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,698 | INFO     | [payload] control thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:07,946 | INFO     | [payload] validate_post thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:09,554 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 06:30:36] 2025-07-25 06:30:11,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900469282624)>', '<ExcThread(monitor, started 139899894228736)>']
[2025-07-25 06:30:36] 2025-07-25 06:30:16,427 | INFO     | all workflow threads have been joined
[2025-07-25 06:30:36] 2025-07-25 06:30:16,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 06:30:36] 2025-07-25 06:30:16,427 | INFO     | traces error code: 0
[2025-07-25 06:30:36] 2025-07-25 06:30:16,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 06:30:36] 2025-07-25 06:30:35,866 | INFO     | PID=2950412 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 06:30:36] 2025-07-25 06:30:35,866 | INFO     | .. there are 3 such processes running
[2025-07-25 06:30:36] 2025-07-25 06:30:35,867 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 06:30:36] 2025-07-25 06:30:35,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 06:30:36] 2025-07-25 06:30:35,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 06:30:36] 2025-07-25 06:30:35,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 06:30:36] 2025-07-25 06:30:35,867 | INFO     | [monitor] control thread has ended
[2025-07-25 06:30:36] 2025-07-25 06:30:35,919 [wrapper] ==== pilot stdout END ====
[2025-07-25 06:30:36] 2025-07-25 06:30:35,921 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 06:30:36] 2025-07-25 06:30:35,922 [wrapper] pilotpid: 2950412
[2025-07-25 06:30:36] 2025-07-25 06:30:35,924 [wrapper] Pilot exit status: 0
[2025-07-25 06:30:36] 2025-07-25 06:30:35,930 [wrapper] pandaids: 6742964617
[2025-07-25 06:30:36] 2025-07-25 06:30:35,947 [wrapper] cleanup supervisor_pilot 3022330 2950413
[2025-07-25 06:30:36] 2025-07-25 06:30:35,949 [wrapper] Test setup, not cleaning
[2025-07-25 06:30:36] 2025-07-25 06:30:35,950 [wrapper] apfmon messages muted
[2025-07-25 06:30:36] 2025-07-25 06:30:35,952 [wrapper] ==== wrapper stdout END ====
[2025-07-25 06:30:36] 2025-07-25 06:30:35,953 [wrapper] ==== wrapper stderr END ====
[2025-07-25 06:30:36]  *** Error codes and diagnostics ***
[2025-07-25 06:30:36]     "exeErrorCode": 0,
[2025-07-25 06:30:36]     "exeErrorDiag": "",
[2025-07-25 06:30:36]     "pilotErrorCode": 0,
[2025-07-25 06:30:36]     "pilotErrorDiag": "",
[2025-07-25 06:30:36]  *** Listing of results directory ***
[2025-07-25 06:30:36] total 636932
[2025-07-25 06:30:36] -rw-r--r-- 1 boinc boinc    530466 Jul 23 14:43 pilot3.tar.gz
[2025-07-25 06:30:36] -rw-r--r-- 1 boinc boinc      5112 Jul 23 14:52 queuedata.json
[2025-07-25 06:30:36] -rwx------ 1 boinc boinc     36292 Jul 23 14:53 runpilot2-wrapper.sh
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc       100 Jul 25 04:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 06:30:36] -rwxr-xr-x 1 boinc boinc      7986 Jul 25 04:23 run_atlas
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc       105 Jul 25 04:23 job.xml
[2025-07-25 06:30:36] -rw-r--r-- 2 boinc boinc     15095 Jul 25 04:23 start_atlas.sh
[2025-07-25 06:30:36] drwxrwx--x 2 boinc boinc      4096 Jul 25 04:23 shared
[2025-07-25 06:30:36] -rw-r--r-- 2 boinc boinc    542904 Jul 25 04:23 input.tar.gz
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc      9702 Jul 25 04:23 init_data.xml
[2025-07-25 06:30:36] -rw-r--r-- 2 boinc boinc 345158470 Jul 25 04:23 EVNT.45697488._000261.pool.root.1
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc         0 Jul 25 04:23 boinc_lockfile
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc      2600 Jul 25 04:23 pandaJob.out
[2025-07-25 06:30:36] -rw------- 1 boinc boinc    979701 Jul 25 04:23 agis_schedconf.cvmfs.json
[2025-07-25 06:30:36] -rw------- 1 boinc boinc   1593052 Jul 25 04:23 agis_ddmendpoints.agis.ALL.json
[2025-07-25 06:30:36] drwx------ 4 boinc boinc      4096 Jul 25 04:23 pilot3
[2025-07-25 06:30:36] -rw------- 1 boinc boinc 300919675 Jul 25 06:29 HITS.45697490._006062.pool.root.1
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc       531 Jul 25 06:29 boinc_task_state.xml
[2025-07-25 06:30:36] -rw------- 1 boinc boinc      1017 Jul 25 06:29 memory_monitor_summary.json
[2025-07-25 06:30:36] -rw------- 1 boinc boinc    387263 Jul 25 06:29 log.45697490._006062.job.log.tgz.1
[2025-07-25 06:30:36] -rw------- 1 boinc boinc      7731 Jul 25 06:30 heartbeat.json
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc      8192 Jul 25 06:30 boinc_mmap_file
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc        27 Jul 25 06:30 wrapper_checkpoint.txt
[2025-07-25 06:30:36] -rw------- 1 boinc boinc       822 Jul 25 06:30 pilotlog.txt
[2025-07-25 06:30:36] -rw------- 1 boinc boinc        95 Jul 25 06:30 pilot_heartbeat.json
[2025-07-25 06:30:36] -rw------- 1 boinc boinc    745366 Jul 25 06:30 log.45697490._006062.job.log.1
[2025-07-25 06:30:36] -rw------- 1 boinc boinc       357 Jul 25 06:30 output.list
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc       620 Jul 25 06:30 runtime_log
[2025-07-25 06:30:36] -rw------- 1 boinc boinc   1146880 Jul 25 06:30 result.tar.gz
[2025-07-25 06:30:36] -rw------- 1 boinc boinc       648 Jul 25 06:30 yEgNDmR1py7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmslLLDmM0YKQm.diag
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc      8954 Jul 25 06:30 runtime_log.err
[2025-07-25 06:30:36] -rw-rw-r-- 1 boinc boinc     20994 Jul 25 06:30 stderr.txt
[2025-07-25 06:30:36] HITS file was successfully produced:
[2025-07-25 06:30:36] -rw------- 1 boinc boinc 300919675 Jul 25 06:29 shared/HITS.pool.root.1
[2025-07-25 06:30:36]  *** Contents of shared directory: ***
[2025-07-25 06:30:36] total 632616
[2025-07-25 06:30:36] -rw-r--r-- 2 boinc boinc     15095 Jul 25 04:23 start_atlas.sh
[2025-07-25 06:30:36] -rw-r--r-- 2 boinc boinc    542904 Jul 25 04:23 input.tar.gz
[2025-07-25 06:30:36] -rw-r--r-- 2 boinc boinc 345158470 Jul 25 04:23 ATLAS.root_0
[2025-07-25 06:30:36] -rw------- 1 boinc boinc 300919675 Jul 25 06:29 HITS.pool.root.1
[2025-07-25 06:30:36] -rw------- 1 boinc boinc   1146880 Jul 25 06:30 result.tar.gz
06:30:37 (2946691): run_atlas exited; CPU time 40772.332453
06:30:37 (2946691): called boinc_finish(0)

</stderr_txt>
]]>

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