Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:36:38 (2301164): wrapper (7.7.26015): starting
22:36:38 (2301164): wrapper: running run_atlas (--nthreads 10)
[2025-07-24 22:36:38] Arguments: --nthreads 10
[2025-07-24 22:36:38] Threads: 10
[2025-07-24 22:36:38] Checking for CVMFS
[2025-07-24 22:36:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 22:36:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 22:36:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 22:36:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 22:36:39] 2.13.1.0 128745 1624 119868 148723 2 206 12660210 39288832 3404 16776704 0 1600277 99.413 4990009 47819 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 22:36:39] CVMFS is ok
[2025-07-24 22:36:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 22:36:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 22:36:39] Further information can be found at the LHC@home message board.
[2025-07-24 22:36:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 22:36:39] Checking for apptainer binary...
[2025-07-24 22:36:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 22:36:39] Running /usr/bin/apptainer --version
[2025-07-24 22:36:39] apptainer version 1.4.1-1.el9
[2025-07-24 22:36:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 22:36:39] c-211-4.aglt2.org
[2025-07-24 22:36:39] apptainer works
[2025-07-24 22:36:39] Set ATHENA_PROC_NUMBER=10
[2025-07-24 22:36:39] Set ATHENA_CORE_NUMBER=10
[2025-07-24 22:36:39] Starting ATLAS job with PandaID=6743749507
[2025-07-24 22:36:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 05:37:35]  *** The last 200 lines of the pilot log: ***
[2025-07-25 05:37:35] 2025-07-25 09:36:58,946 | INFO     | executing command: lscpu
[2025-07-25 05:37:35] 2025-07-25 09:36:58,993 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 05:37:35] 2025-07-25 09:37:01,226 | INFO     | monitor loop #1572: job 0:6743749507 is in state 'finished'
[2025-07-25 05:37:35] 2025-07-25 09:37:01,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,780 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 05:37:35] 2025-07-25 09:37:02,787 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2639.757249999999
[2025-07-25 05:37:35] 2025-07-25 09:37:02,794 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6743749507/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,795 | INFO     | extracted standard info from prmon json
[2025-07-25 05:37:35] 2025-07-25 09:37:02,795 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 05:37:35] 2025-07-25 09:37:02,795 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 05:37:35] 2025-07-25 09:37:02,796 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 05:37:35] 2025-07-25 09:37:02,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 05:37:35] 2025-07-25 09:37:02,804 | INFO     | fitting pss+swap vs Time
[2025-07-25 05:37:35] 2025-07-25 09:37:02,805 | INFO     | sum of square deviations: 21844450464.673126
[2025-07-25 05:37:35] 2025-07-25 09:37:02,809 | INFO     | sum of deviations: -74127145413.08226
[2025-07-25 05:37:35] 2025-07-25 09:37:02,810 | INFO     | mean x: 1753423599.7893462
[2025-07-25 05:37:35] 2025-07-25 09:37:02,810 | INFO     | mean y: 2725963.4358353512
[2025-07-25 05:37:35] 2025-07-25 09:37:02,810 | INFO     | -- intersect: 5952808633.746669
[2025-07-25 05:37:35] 2025-07-25 09:37:02,810 | INFO     | intersect: 5952808633.746669
[2025-07-25 05:37:35] 2025-07-25 09:37:02,811 | INFO     | chi2: 1.6861083824985725
[2025-07-25 05:37:35] 2025-07-25 09:37:02,811 | INFO     | sum of square deviations: 21060758451.519688
[2025-07-25 05:37:35] 2025-07-25 09:37:02,816 | INFO     | sum of deviations: -73664007470.97058
[2025-07-25 05:37:35] 2025-07-25 09:37:02,816 | INFO     | mean x: 1753423447.2990196
[2025-07-25 05:37:35] 2025-07-25 09:37:02,816 | INFO     | mean y: 2726053.5735294116
[2025-07-25 05:37:35] 2025-07-25 09:37:02,816 | INFO     | -- intersect: 6135657980.927258
[2025-07-25 05:37:35] 2025-07-25 09:37:02,816 | INFO     | intersect: 6135657980.927258
[2025-07-25 05:37:35] 2025-07-25 09:37:02,817 | INFO     | chi2: 1.6842923444503486
[2025-07-25 05:37:35] 2025-07-25 09:37:02,817 | INFO     | current chi2=1.6842923444503486 (change=0.10770589050348205 %)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,817 | INFO     | right removable region: 407
[2025-07-25 05:37:35] 2025-07-25 09:37:02,818 | INFO     | sum of square deviations: 21060559591.519684
[2025-07-25 05:37:35] 2025-07-25 09:37:02,822 | INFO     | sum of deviations: -127416991790.84315
[2025-07-25 05:37:35] 2025-07-25 09:37:02,823 | INFO     | mean x: 1753423752.2990196
[2025-07-25 05:37:35] 2025-07-25 09:37:02,823 | INFO     | mean y: 2736261.3921568627
[2025-07-25 05:37:35] 2025-07-25 09:37:02,823 | INFO     | -- intersect: 10611000437.929754
[2025-07-25 05:37:35] 2025-07-25 09:37:02,823 | INFO     | intersect: 10611000437.929754
[2025-07-25 05:37:35] 2025-07-25 09:37:02,824 | INFO     | chi2: 0.5157357978542886
[2025-07-25 05:37:35] 2025-07-25 09:37:02,824 | INFO     | current chi2=0.5157357978542886 (change=69.41265441726578 %)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,824 | INFO     | sum of square deviations: 20295645818.28779
[2025-07-25 05:37:35] 2025-07-25 09:37:02,829 | INFO     | sum of deviations: -108548463170.92302
[2025-07-25 05:37:35] 2025-07-25 09:37:02,829 | INFO     | mean x: 1753423904.808933
[2025-07-25 05:37:35] 2025-07-25 09:37:02,829 | INFO     | mean y: 2732496.923076923
[2025-07-25 05:37:35] 2025-07-25 09:37:02,829 | INFO     | -- intersect: 9380678478.945812
[2025-07-25 05:37:35] 2025-07-25 09:37:02,829 | INFO     | intersect: 9380678478.945812
[2025-07-25 05:37:35] 2025-07-25 09:37:02,830 | INFO     | chi2: 0.4829500908928988
[2025-07-25 05:37:35] 2025-07-25 09:37:02,830 | INFO     | current chi2=0.4829500908928988 (change=6.357074125510433 %)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,830 | INFO     | left removable region: 20
[2025-07-25 05:37:35] 2025-07-25 09:37:02,831 | INFO     | sum of square deviations: 17972977599.384953
[2025-07-25 05:37:35] 2025-07-25 09:37:02,835 | INFO     | sum of deviations: -63768085444.41093
[2025-07-25 05:37:35] 2025-07-25 09:37:02,835 | INFO     | mean x: 1753424026.8423772
[2025-07-25 05:37:35] 2025-07-25 09:37:02,835 | INFO     | mean y: 2723366.403100775
[2025-07-25 05:37:35] 2025-07-25 09:37:02,835 | INFO     | -- intersect: 6223868001.212754
[2025-07-25 05:37:35] 2025-07-25 09:37:02,835 | INFO     | intersect: 6223868001.212754
[2025-07-25 05:37:35] 2025-07-25 09:37:02,836 | INFO     | chi2: 0.3619069580192379
[2025-07-25 05:37:35] 2025-07-25 09:37:02,836 | INFO     | -- intersect: 6223868001.212754
[2025-07-25 05:37:35] 2025-07-25 09:37:02,837 | INFO     | current memory leak: -3.55 B/s (using 387 data points, chi2=0.36)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,837 | INFO     | could have reported an average CPU frequency of 2610 MHz (17 samples)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,837 | INFO     | ..............................
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . Timing measurements:
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . get job = 0 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . initial setup = 2 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . payload setup = 6 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . stage-in = 0 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . payload execution = 25181 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . stage-out = 2 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | . log creation = 0 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,838 | INFO     | ..............................
[2025-07-25 05:37:35] 2025-07-25 09:37:02,950 | INFO     | 
[2025-07-25 05:37:35] 2025-07-25 09:37:02,950 | INFO     | job summary report
[2025-07-25 05:37:35] 2025-07-25 09:37:02,950 | INFO     | --------------------------------------------------
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | PanDA job id: 6743749507
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | task id: 45697523
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | errors: (none)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | pilot state: finished 
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | transexitcode: 0
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | exeerrorcode: 0
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | exeerrordiag: 
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | exitcode: 0
[2025-07-25 05:37:35] 2025-07-25 09:37:02,951 | INFO     | exitmsg: OK
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | cpuconsumptiontime: 72653 s
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | nevents: 400
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | neventsw: 0
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | pid: 2315449
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | pgrp: 2315449
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | corecount: 10
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | event service: False
[2025-07-25 05:37:35] 2025-07-25 09:37:02,952 | INFO     | sizes: {0: 2397514, 3: 2397776, 11: 2397804, 25191: 2433257, 25194: 2442311, 25200: 2442513}
[2025-07-25 05:37:35] 2025-07-25 09:37:02,953 | INFO     | --------------------------------------------------
[2025-07-25 05:37:35] 2025-07-25 09:37:02,953 | INFO     | 
[2025-07-25 05:37:35] 2025-07-25 09:37:02,953 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 05:37:35] 2025-07-25 09:37:02,975 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,976 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 05:37:35] 2025-07-25 09:37:02,978 | INFO     | job 6743749507 has completed (purged errors)
[2025-07-25 05:37:35] 2025-07-25 09:37:02,978 | INFO     | overall cleanup function is called
[2025-07-25 05:37:35] 2025-07-25 09:37:03,987 | INFO     | --- collectZombieJob: --- 10, [2315449]
[2025-07-25 05:37:35] 2025-07-25 09:37:03,988 | INFO     | zombie collector waiting for pid 2315449
[2025-07-25 05:37:35] 2025-07-25 09:37:03,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 05:37:35] 2025-07-25 09:37:03,988 | INFO     | collected zombie processes
[2025-07-25 05:37:35] 2025-07-25 09:37:03,988 | INFO     | will attempt to kill all subprocesses of pid=2315449
[2025-07-25 05:37:35] 2025-07-25 09:37:04,226 | INFO     | process IDs to be killed: [2315449] (in reverse order)
[2025-07-25 05:37:35] 2025-07-25 09:37:04,282 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 05:37:35] 2025-07-25 09:37:04,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 05:37:35] 2025-07-25 09:37:04,292 | INFO     | did not find any defunct processes belonging to 2315449
[2025-07-25 05:37:35] 2025-07-25 09:37:04,301 | INFO     | did not find any defunct processes belonging to 2315449
[2025-07-25 05:37:35] 2025-07-25 09:37:04,301 | INFO     | ready for new job
[2025-07-25 05:37:35] 2025-07-25 09:37:04,301 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 05:37:35] 2025-07-25 09:37:04,304 | INFO     | ***************************************
[2025-07-25 05:37:35] 2025-07-25 09:37:04,305 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 05:37:35] 2025-07-25 09:37:04,305 | INFO     | ***************************************
[2025-07-25 05:37:35] 2025-07-25 09:37:04,305 | INFO     | 
[2025-07-25 05:37:35] 2025-07-25 09:37:04,307 | INFO     | architecture information:
[2025-07-25 05:37:35] 2025-07-25 09:37:04,308 | INFO     | executing command: cat /etc/os-release
[2025-07-25 05:37:35] 2025-07-25 09:37:04,323 | INFO     | cat /etc/os-release:
[2025-07-25 05:37:35] NAME="CentOS Linux"
[2025-07-25 05:37:35] VERSION="7 (Core)"
[2025-07-25 05:37:35] ID="centos"
[2025-07-25 05:37:35] ID_LIKE="rhel fedora"
[2025-07-25 05:37:35] VERSION_ID="7"
[2025-07-25 05:37:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 05:37:35] ANSI_COLOR="0;31"
[2025-07-25 05:37:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 05:37:35] HOME_URL="https://www.centos.org/"
[2025-07-25 05:37:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 05:37:35] 
[2025-07-25 05:37:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 05:37:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 05:37:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 05:37:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 05:37:35] 
[2025-07-25 05:37:35] 2025-07-25 09:37:04,324 | INFO     | ***************************************
[2025-07-25 05:37:35] 2025-07-25 09:37:04,826 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 05:37:35] 2025-07-25 09:37:04,845 | INFO     | sufficient remaining disk space (53604253696 B)
[2025-07-25 05:37:35] 2025-07-25 09:37:04,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 05:37:35] 2025-07-25 09:37:04,845 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 05:37:35] 2025-07-25 09:37:04,845 | INFO     | update_server=False
[2025-07-25 05:37:35] 2025-07-25 09:37:04,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 05:37:35] 2025-07-25 09:37:04,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 05:37:35] 2025-07-25 09:37:04,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 05:37:35] 2025-07-25 09:37:04,846 | INFO     | aborting loop
[2025-07-25 05:37:35] 2025-07-25 09:37:04,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 05:37:35] 2025-07-25 09:37:04,936 | INFO     | all data control threads have been joined
[2025-07-25 05:37:35] 2025-07-25 09:37:05,851 | INFO     | [job] retrieve thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:05,851 | INFO     | [job] queue monitor thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:05,852 | INFO     | [job] job monitor thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:05,891 | INFO     | all payload control threads have been joined
[2025-07-25 05:37:35] 2025-07-25 09:37:05,942 | INFO     | [data] control thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,149 | INFO     | [payload] failed_post thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,162 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,415 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,423 | INFO     | all job control threads have been joined
[2025-07-25 05:37:35] 2025-07-25 09:37:06,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,643 | INFO     | [payload] validate_post thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,664 | INFO     | [job] validate thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,897 | INFO     | [payload] control thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:06,942 | INFO     | [data] copytool_out thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:07,029 | INFO     | [data] copytool_in thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:07,283 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:07,428 | INFO     | [job] control thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:07,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 05:37:35] 2025-07-25 09:37:11,730 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 05:37:35] 2025-07-25 09:37:13,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140652848535360)>', '<ExcThread(monitor, started 140652343957248)>']
[2025-07-25 05:37:35] 2025-07-25 09:37:18,334 | INFO     | all workflow threads have been joined
[2025-07-25 05:37:35] 2025-07-25 09:37:18,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 05:37:35] 2025-07-25 09:37:18,335 | INFO     | traces error code: 0
[2025-07-25 05:37:35] 2025-07-25 09:37:18,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 05:37:35] 2025-07-25 09:37:35,305 | INFO     | PID=2306877 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 05:37:35] 2025-07-25 09:37:35,306 | INFO     | .. there are 6 such processes running
[2025-07-25 05:37:35] 2025-07-25 09:37:35,307 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 05:37:35] 2025-07-25 09:37:35,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 05:37:35] 2025-07-25 09:37:35,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 05:37:35] 2025-07-25 09:37:35,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 05:37:35] 2025-07-25 09:37:35,307 | INFO     | [monitor] control thread has ended
[2025-07-25 05:37:35] 2025-07-25 09:37:35,487 [wrapper] ==== pilot stdout END ====
[2025-07-25 05:37:35] 2025-07-25 09:37:35,490 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 05:37:35] 2025-07-25 09:37:35,493 [wrapper] pilotpid: 2306877
[2025-07-25 05:37:35] 2025-07-25 09:37:35,497 [wrapper] Pilot exit status: 0
[2025-07-25 05:37:35] 2025-07-25 09:37:35,508 [wrapper] pandaids: 6743749507
[2025-07-25 05:37:35] 2025-07-25 09:37:35,552 [wrapper] cleanup supervisor_pilot 2825281 2306878
[2025-07-25 05:37:35] 2025-07-25 09:37:35,555 [wrapper] Test setup, not cleaning
[2025-07-25 05:37:35] 2025-07-25 09:37:35,559 [wrapper] apfmon messages muted
[2025-07-25 05:37:35] 2025-07-25 09:37:35,562 [wrapper] ==== wrapper stdout END ====
[2025-07-25 05:37:35] 2025-07-25 09:37:35,565 [wrapper] ==== wrapper stderr END ====
[2025-07-25 05:37:35]  *** Error codes and diagnostics ***
[2025-07-25 05:37:35]     "exeErrorCode": 0,
[2025-07-25 05:37:35]     "exeErrorDiag": "",
[2025-07-25 05:37:35]     "pilotErrorCode": 0,
[2025-07-25 05:37:35]     "pilotErrorDiag": "",
[2025-07-25 05:37:35]  *** Listing of results directory ***
[2025-07-25 05:37:35] total 573712
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 13:45 pilot3.tar.gz
[2025-07-25 05:37:35] -rwx------. 1 boincer umatlas     36292 Jul 23 14:14 runpilot2-wrapper.sh
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 14:14 queuedata.json
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas       100 Jul 24 22:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 05:37:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 22:36 run_atlas
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas       105 Jul 24 22:36 job.xml
[2025-07-25 05:37:35] -rw-r--r--. 2 boincer umatlas 315563949 Jul 24 22:36 EVNT.45697521._000223.pool.root.1
[2025-07-25 05:37:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 22:36 start_atlas.sh
[2025-07-25 05:37:35] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 22:36 shared
[2025-07-25 05:37:35] -rw-r--r--. 2 boincer umatlas    542899 Jul 24 22:36 input.tar.gz
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas         0 Jul 24 22:36 boinc_lockfile
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas      2635 Jul 24 22:36 pandaJob.out
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas    979709 Jul 24 22:36 agis_schedconf.cvmfs.json
[2025-07-25 05:37:35] drwx------. 4 boincer umatlas      4096 Jul 24 22:36 pilot3
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas      6657 Jul 25 05:30 init_data.xml
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas 262860996 Jul 25 05:36 HITS.45697523._005823.pool.root.1
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas       531 Jul 25 05:36 boinc_task_state.xml
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas      1045 Jul 25 05:36 memory_monitor_summary.json
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas   1593052 Jul 25 05:36 agis_ddmendpoints.agis.ALL.json
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas    528296 Jul 25 05:36 log.45697523._005823.job.log.tgz.1
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas      7824 Jul 25 05:37 heartbeat.json
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 05:37 boinc_mmap_file
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas        28 Jul 25 05:37 wrapper_checkpoint.txt
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas        95 Jul 25 05:37 pilot_heartbeat.json
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas       822 Jul 25 05:37 pilotlog.txt
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas   2060506 Jul 25 05:37 log.45697523._005823.job.log.1
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas       357 Jul 25 05:37 output.list
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas       620 Jul 25 05:37 runtime_log
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas   2611200 Jul 25 05:37 result.tar.gz
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas      8658 Jul 25 05:37 runtime_log.err
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas       658 Jul 25 05:37 M3lKDmw9sy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmR1LLDmaFf9ln.diag
[2025-07-25 05:37:35] -rw-r--r--. 1 boincer umatlas     21272 Jul 25 05:37 stderr.txt
[2025-07-25 05:37:35] HITS file was successfully produced:
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas 262860996 Jul 25 05:36 shared/HITS.pool.root.1
[2025-07-25 05:37:35]  *** Contents of shared directory: ***
[2025-07-25 05:37:35] total 567976
[2025-07-25 05:37:35] -rw-r--r--. 2 boincer umatlas 315563949 Jul 24 22:36 ATLAS.root_0
[2025-07-25 05:37:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 22:36 start_atlas.sh
[2025-07-25 05:37:35] -rw-r--r--. 2 boincer umatlas    542899 Jul 24 22:36 input.tar.gz
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas 262860996 Jul 25 05:36 HITS.pool.root.1
[2025-07-25 05:37:35] -rw-------. 1 boincer umatlas   2611200 Jul 25 05:37 result.tar.gz
05:37:36 (2301164): run_atlas exited; CPU time 73167.053882
05:37:36 (2301164): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN