Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-24 09:35:52 (2315829): Detected: vboxwrapper 26206
2025-07-24 09:35:52 (2315829): Detected: BOINC client v7.24.1
2025-07-24 09:35:52 (2315829): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-07-24 09:35:52 (2315829): Successfully copied 'init_data.xml' to the shared directory.
2025-07-24 09:35:52 (2315829): Create VM. (boinc_6b029d494b2907c0, slot#1)
2025-07-24 09:35:52 (2315829): Setting Memory Size for VM. (4600MB)
2025-07-24 09:35:53 (2315829): Setting CPU Count for VM. (6)
2025-07-24 09:35:53 (2315829): Setting Chipset Options for VM.
2025-07-24 09:35:53 (2315829): Setting Graphics Controller Options for VM.
2025-07-24 09:35:53 (2315829): Setting Boot Options for VM.
2025-07-24 09:35:53 (2315829): Setting Network Configuration for NAT.
2025-07-24 09:35:53 (2315829): Enabling VM Network Access.
2025-07-24 09:35:53 (2315829): Disabling USB Support for VM.
2025-07-24 09:35:53 (2315829): Disabling COM Port Support for VM.
2025-07-24 09:35:53 (2315829): Disabling LPT Port Support for VM.
2025-07-24 09:35:53 (2315829): Disabling Audio Support for VM.
2025-07-24 09:35:53 (2315829): Disabling Clipboard Support for VM.
2025-07-24 09:35:53 (2315829): Disabling Drag and Drop Support for VM.
2025-07-24 09:35:53 (2315829): Adding storage controller(s) to VM.
2025-07-24 09:35:53 (2315829): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-24 09:35:55 (2315829): Adding VirtualBox Guest Additions to VM.
2025-07-24 09:35:55 (2315829): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-24 09:35:55 (2315829): forwarding host port 49669 to guest port 80
2025-07-24 09:35:55 (2315829): Enabling remote desktop for VM.
2025-07-24 09:35:55 (2315829): Required extension pack not installed, remote desktop not enabled.
2025-07-24 09:35:55 (2315829): Enabling shared directory for VM.
2025-07-24 09:35:55 (2315829): Starting VM using VBoxManage interface. (boinc_6b029d494b2907c0, slot#1)
2025-07-24 09:35:57 (2315829): Successfully started VM. (PID = '2316753')
2025-07-24 09:35:57 (2315829): Reporting VM Process ID to BOINC.
2025-07-24 09:35:57 (2315829): Guest Log: BIOS: VirtualBox 7.0.16
2025-07-24 09:35:57 (2315829): Guest Log: CPUID EDX: 0x178bfbff
2025-07-24 09:35:57 (2315829): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-24 09:35:57 (2315829): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-24 09:35:57 (2315829): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-24 09:35:57 (2315829): Detected: Web Application Enabled (http://localhost:49669)
2025-07-24 09:35:57 (2315829): Preference change detected
2025-07-24 09:35:57 (2315829): Setting CPU throttle for VM. (20%)
2025-07-24 09:35:57 (2315829): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-24 09:35:59 (2315829): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-24 09:35:59 (2315829): Guest Log: BIOS: Booting from Hard Disk...
2025-07-24 09:36:04 (2315829): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-24 09:36:04 (2315829): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-24 09:36:04 (2315829): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-24 09:37:20 (2315829): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-24 09:37:20 (2315829): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-24 09:37:34 (2315829): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000120 main     Log opened 2025-07-24T16:37:36.946816000Z
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000188 main     OS Product: Linux
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000198 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000207 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000217 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000217 main     Process ID: 1337
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.000217 main     Package type: LINUX_64BITS_GENERIC
2025-07-24 09:37:34 (2315829): Guest Log: 00:00:00.001166 main     5.2.32 r132073 started. Verbose level = 0
2025-07-24 09:37:34 (2315829): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-24 09:37:34 (2315829): Guest Log: [INFO] Mounting shared directory
2025-07-24 09:37:35 (2315829): Guest Log: [INFO] Checking for init_data.xml
2025-07-24 09:39:54 (2315829): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-24 09:39:54 (2315829): Guest Log: [INFO] Detected branch: prod
2025-07-24 09:39:54 (2315829): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-24 09:39:54 (2315829): Guest Log: Copying input files
2025-07-24 09:39:57 (2315829): Guest Log: Copied input files into RunAtlas.
2025-07-24 09:39:57 (2315829): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-24 09:39:57 (2315829): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-24 09:39:57 (2315829): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-24 09:39:57 (2315829): Guest Log: Further information can be found at the LHC@home message board.
2025-07-24 09:40:09 (2315829): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-24 09:40:10 (2315829): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-24 09:40:10 (2315829): Guest Log: 2.6.3.0 1663 2 30256 148708 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-24 09:40:10 (2315829): Guest Log: copied the webapp to /var/www
2025-07-24 09:40:10 (2315829): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-24 09:40:10 (2315829): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-24 09:40:11 (2315829): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-24 09:40:11 (2315829): Guest Log:  *** Starting ATLAS job. (PandaID=6743233171 taskID=45668900) ***
2025-07-24 10:57:24 (2315829): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 23:19:36 (2315829): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 23:19:42 (2315829): Guest Log: 01:23:33.465741 timesync vgsvcTimeSyncWorker: Radical host time change: 130 942 860 000 000ns (HostNow=1 753 510 782 081 000 000 ns HostLast=1 753 379 839 221 000 000 ns)
2025-07-25 23:19:52 (2315829): Guest Log: 01:23:43.487314 timesync vgsvcTimeSyncWorker: Radical guest time change: 130 722 119 383 000ns (GuestNow=1 753 510 792 317 028 000 ns GuestLast=1 753 380 070 197 645 000 ns fSetTimeLastLoop=true )
2025-07-25 23:30:59 (2315829): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 00:05:15 (2315829): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 00:05:20 (2315829): Guest Log: 01:35:26.495917 timesync vgsvcTimeSyncWorker: Radical host time change: 2 066 275 000 000ns (HostNow=1 753 513 519 368 000 000 ns HostLast=1 753 511 453 093 000 000 ns)
2025-07-26 00:05:30 (2315829): Guest Log: 01:35:36.500964 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 034 700 629 000ns (GuestNow=1 753 513 529 699 810 000 ns GuestLast=1 753 511 494 999 181 000 ns fSetTimeLastLoop=true )
2025-07-26 00:11:26 (2315829): Status Report: Elapsed Time: '6000.000000'
2025-07-26 00:11:26 (2315829): Status Report: CPU Time: '3990.500000'
2025-07-26 00:13:42 (2315829): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 00:13:43 (2315829): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:16:18 (2315829): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:34:14 (2315829): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 02:08:26 (2315829): Status Report: Elapsed Time: '12000.000000'
2025-07-26 02:08:26 (2315829): Status Report: CPU Time: '10821.200000'
2025-07-26 03:47:26 (2315829): Status Report: Elapsed Time: '18000.000000'
2025-07-26 03:47:26 (2315829): Status Report: CPU Time: '17645.020000'
2025-07-26 03:58:47 (2315829): Guest Log:  *** Job finished ***
2025-07-26 03:58:47 (2315829): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:33,275 | INFO     | [payload] execute_payloads thread has finished
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:33,668 | INFO     | [data] copytool_out thread has finished
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:35,200 | INFO     | [data] queue_monitor thread has finished
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:36,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328113366848)>', '<ExcThread(monitor, started 140327251867392)>']
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:37,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:37,150 | INFO     | [monitor] control thread has ended
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,000 | INFO     | all workflow threads have been joined
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,000 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,000 | INFO     | traces error code: 0
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,139 [wrapper] ==== pilot stdout END ====
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,141 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,144 [wrapper] pilotpid: 6032
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:42,146 [wrapper] Pilot exit status: 0
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:43,290 [wrapper] pandaids: 6743233171
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:43,305 [wrapper] cleanup supervisor_pilot 14442 6033
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:43,308 [wrapper] Test setup, not cleaning
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:43,310 [wrapper] apfmon messages muted
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:43,312 [wrapper] ==== wrapper stdout END ====
2025-07-26 03:58:47 (2315829): Guest Log: 2025-07-26 10:50:43,315 [wrapper] ==== wrapper stderr END ====
2025-07-26 03:58:47 (2315829): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 03:58:47 (2315829): Guest Log:     "exeErrorCode": 0,
2025-07-26 03:58:47 (2315829): Guest Log:     "exeErrorDiag": "",
2025-07-26 03:58:47 (2315829): Guest Log:     "pilotErrorCode": 0,
2025-07-26 03:58:47 (2315829): Guest Log:     "pilotErrorDiag": "",
2025-07-26 03:58:47 (2315829): Guest Log:  *** Listing of results directory ***
2025-07-26 03:58:47 (2315829): Guest Log: total 196332
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 23 17:02 pilot3.tar.gz
2025-07-26 03:58:47 (2315829): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 23 17:08 runpilot2-wrapper.sh
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 23 17:08 queuedata.json
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas    542870 Jul 24 16:40 input.tar.gz
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 24 16:40 start_atlas.sh
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas      9704 Jul 24 16:40 init_data.xml
2025-07-26 03:58:47 (2315829): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 24 16:40 EVNT.45668898._000019.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas      2536 Jul 24 16:40 pandaJob.out
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas    979669 Jul 24 16:45 agis_schedconf.cvmfs.json
2025-07-26 03:58:47 (2315829): Guest Log: drwx------. 4 atlas atlas      4096 Jul 24 16:45 pilot3
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas 194380484 Jul 26 10:49 HITS.45668900._000471.pool.root.1
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas        99 Jul 26 10:49 pilot_heartbeat.json
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas      1028 Jul 26 10:50 memory_monitor_summary.json
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 10:50 agis_ddmendpoints.agis.ALL.json
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas    354206 Jul 26 10:50 log.45668900._000471.job.log.tgz.1
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas      7790 Jul 26 10:50 heartbeat.json
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 26 10:50 pilotlog.txt
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas   1072325 Jul 26 10:50 log.45668900._000471.job.log.1
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 10:50 output.list
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 10:50 runtime_log
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas   1443840 Jul 26 10:50 result.tar.gz
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 atlas atlas      8634 Jul 26 10:50 runtime_log.err
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas       671 Jul 26 10:50 EWtLDm17ry7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmazLLDm0GwdJm.diag
2025-07-26 03:58:47 (2315829): Guest Log: Looking for outputfile HITS.45668900._000471.pool.root.1
2025-07-26 03:58:47 (2315829): Guest Log: HITS file was successfully produced
2025-07-26 03:58:47 (2315829): Guest Log: -rw-------. 1 atlas atlas 194380484 Jul 26 10:49 /home/atlas/RunAtlas/HITS.45668900._000471.pool.root.1
2025-07-26 03:58:47 (2315829): Guest Log: Successfully finished the ATLAS job!
2025-07-26 03:58:47 (2315829): Guest Log: Copying the results back to the shared directory!
2025-07-26 03:58:47 (2315829): Guest Log:  *** Contents of shared directory: ***
2025-07-26 03:58:47 (2315829): Guest Log: total 271848
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 root root 276352601 Jul 24 16:35 ATLAS.root_0
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 root root      9704 Jul 24 16:35 init_data.xml
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 root root    542870 Jul 24 16:35 input.tar.gz
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 root root   1443840 Jul 26  2025 result.tar.gz
2025-07-26 03:58:47 (2315829): Guest Log: -rw-r--r--. 1 root root     15095 Jul 24 16:35 start_atlas.sh
2025-07-26 03:58:47 (2315829): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 03:58:47 (2315829): VM Completion File Detected.
2025-07-26 03:58:47 (2315829): Powering off VM.
2025-07-26 03:58:48 (2315829): Successfully stopped VM.
2025-07-26 03:58:48 (2315829): Deregistering VM. (boinc_6b029d494b2907c0, slot#1)
2025-07-26 03:58:48 (2315829): Removing network bandwidth throttle group from VM.
2025-07-26 03:58:48 (2315829): Removing VM from VirtualBox.
03:58:53 (2315829): called boinc_finish(0)

</stderr_txt>
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