Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:14:35 (1975036): wrapper (7.7.26015): starting
07:14:35 (1975036): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 07:14:35] Arguments: --nthreads 12
[2025-07-24 07:14:35] Threads: 12
[2025-07-24 07:14:35] Checking for CVMFS
[2025-07-24 07:14:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 07:14:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 07:14:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 07:14:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 07:14:36] 2.13.1.0 8995 28111 249376 148683 3 11 37207536 46080000 6475 130560 0 252344244 99.908 62425374 23664 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-24 07:14:36] CVMFS is ok
[2025-07-24 07:14:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 07:14:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 07:14:36] Further information can be found at the LHC@home message board.
[2025-07-24 07:14:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 07:14:36] Checking for apptainer binary...
[2025-07-24 07:14:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 07:14:36] Running /usr/bin/apptainer --version
[2025-07-24 07:14:36] apptainer version 1.4.1-1.el9
[2025-07-24 07:14:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 07:14:36] mff2103.farm.particle.cz
[2025-07-24 07:14:36] apptainer works
[2025-07-24 07:14:36] Set ATHENA_PROC_NUMBER=12
[2025-07-24 07:14:36] Set ATHENA_CORE_NUMBER=12
[2025-07-24 07:14:36] Starting ATLAS job with PandaID=6743232420
[2025-07-24 07:14:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 08:33:09]  *** The last 200 lines of the pilot log: ***
[2025-07-24 08:33:09]  is_tar=False
[2025-07-24 08:33:09]  lfn=log.45668889._001082.job.log.tgz.1
[2025-07-24 08:33:09]  mtime=0
[2025-07-24 08:33:09]  protocol_id=None
[2025-07-24 08:33:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-24 08:33:09]  replicas=None
[2025-07-24 08:33:09]  scope=mc23_13p6TeV
[2025-07-24 08:33:09]  status=None
[2025-07-24 08:33:09]  status_code=0
[2025-07-24 08:33:09]  storage_token=
[2025-07-24 08:33:09]  surl=/scratch/.boinc/slots/4/PanDA_Pilot-6743232420/log.45668889._001082.job.log.tgz.1
[2025-07-24 08:33:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/13/log.45668889._001082.job.log.tgz.1
[2025-07-24 08:33:09]  workdir=None
[2025-07-24 08:33:09] ]
[2025-07-24 08:33:09] 2025-07-24 06:32:42,951 | INFO     | transferring file log.45668889._001082.job.log.tgz.1 from /scratch/.boinc/slots/4/PanDA_Pilot-6743232420/log.45668889._001082.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-24 08:33:09] 2025-07-24 06:32:42,952 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/4/PanDA_Pilot-6743232420/log.45668889._001082.job.log.tgz.1 /scratch/.boinc/slots/4/log.45668889._001082.j
[2025-07-24 08:33:09] 2025-07-24 06:32:42,975 | INFO     | adding to output.list: log.45668889._001082.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/13/log.45668889._001082.job.log.tg
[2025-07-24 08:33:09] 2025-07-24 06:32:42,976 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 08:33:09] 2025-07-24 06:32:42,976 | INFO     | summary of transferred files:
[2025-07-24 08:33:09] 2025-07-24 06:32:42,976 | INFO     |  -- lfn=log.45668889._001082.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 08:33:09] 2025-07-24 06:32:42,977 | INFO     | stage-out finished correctly
[2025-07-24 08:33:09] 2025-07-24 06:32:43,071 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 08:33:09] 2025-07-24 06:32:43,382 | INFO     | job 6743232420 has state=finished
[2025-07-24 08:33:09] 2025-07-24 06:32:43,382 | INFO     | preparing for final server update for job 6743232420 in state='finished'
[2025-07-24 08:33:09] 2025-07-24 06:32:43,383 | INFO     | this job has now completed (state=finished)
[2025-07-24 08:33:09] 2025-07-24 06:32:43,383 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 08:33:09] 2025-07-24 06:32:43,383 | INFO     | log transfer has been attempted: DONE
[2025-07-24 08:33:09] 2025-07-24 06:32:43,383 | INFO     | job 6743232420 has finished - writing final server update
[2025-07-24 08:33:09] 2025-07-24 06:32:43,383 | INFO     | total number of processed events: 400 (read)
[2025-07-24 08:33:09] 2025-07-24 06:32:43,384 | INFO     | executing command: lscpu
[2025-07-24 08:33:09] 2025-07-24 06:32:43,463 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 08:33:09] 2025-07-24 06:32:44,216 | INFO     | monitor loop #341: job 0:6743232420 is in state 'finished'
[2025-07-24 08:33:09] 2025-07-24 06:32:44,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 08:33:09] 2025-07-24 06:32:46,720 | INFO     | monitor loop #342: job 0:6743232420 is in state 'finished'
[2025-07-24 08:33:09] 2025-07-24 06:32:46,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,163 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 08:33:09] 2025-07-24 06:32:48,178 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2713.43746875
[2025-07-24 08:33:09] 2025-07-24 06:32:48,196 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6743232420/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,196 | INFO     | extracted standard info from prmon json
[2025-07-24 08:33:09] 2025-07-24 06:32:48,197 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 08:33:09] 2025-07-24 06:32:48,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 08:33:09] 2025-07-24 06:32:48,197 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 08:33:09] 2025-07-24 06:32:48,197 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 08:33:09] 2025-07-24 06:32:48,199 | INFO     | fitting pss+swap vs Time
[2025-07-24 08:33:09] 2025-07-24 06:32:48,199 | INFO     | sum of square deviations: 106336877.5
[2025-07-24 08:33:09] 2025-07-24 06:32:48,199 | INFO     | sum of deviations: -6734647355.0
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | mean x: 1753336528.5
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | mean y: 2829307.057142857
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | -- intersect: 111047120729.73322
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | intersect: 111047120729.73322
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | chi2: 0.009610996432055905
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | -- intersect: 111047120729.73322
[2025-07-24 08:33:09] 2025-07-24 06:32:48,200 | INFO     | current memory leak: -63.33 B/s (using 70 data points, chi2=0.01)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | could have reported an average CPU frequency of 2752 MHz (6 samples)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | ..............................
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . Timing measurements:
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . get job = 0 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . initial setup = 1 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . payload setup = 7 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . stage-in = 0 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . payload execution = 4646 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . stage-out = 0 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,201 | INFO     | . log creation = 0 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,202 | INFO     | ..............................
[2025-07-24 08:33:09] 2025-07-24 06:32:48,537 | INFO     | 
[2025-07-24 08:33:09] 2025-07-24 06:32:48,537 | INFO     | job summary report
[2025-07-24 08:33:09] 2025-07-24 06:32:48,537 | INFO     | --------------------------------------------------
[2025-07-24 08:33:09] 2025-07-24 06:32:48,537 | INFO     | PanDA job id: 6743232420
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | task id: 45668889
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | errors: (none)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | pilot state: finished 
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | transexitcode: 0
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | exeerrorcode: 0
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | exeerrordiag: 
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | exitcode: 0
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | exitmsg: OK
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | cpuconsumptiontime: 50801 s
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | nevents: 400
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | neventsw: 0
[2025-07-24 08:33:09] 2025-07-24 06:32:48,538 | INFO     | pid: 1987419
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | pgrp: 1987419
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | corecount: 12
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | event service: False
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | sizes: {0: 2397424, 6: 2397686, 11: 2397714, 4657: 2423841, 4658: 2432897, 4663: 2433035}
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | --------------------------------------------------
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | 
[2025-07-24 08:33:09] 2025-07-24 06:32:48,539 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-07-24 08:33:09] 2025-07-24 06:32:48,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | job 6743232420 has completed (purged errors)
[2025-07-24 08:33:09] 2025-07-24 06:32:48,569 | INFO     | overall cleanup function is called
[2025-07-24 08:33:09] 2025-07-24 06:32:49,579 | INFO     | --- collectZombieJob: --- 10, [1987419]
[2025-07-24 08:33:09] 2025-07-24 06:32:49,579 | INFO     | zombie collector waiting for pid 1987419
[2025-07-24 08:33:09] 2025-07-24 06:32:49,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 08:33:09] 2025-07-24 06:32:49,580 | INFO     | collected zombie processes
[2025-07-24 08:33:09] 2025-07-24 06:32:49,580 | INFO     | will attempt to kill all subprocesses of pid=1987419
[2025-07-24 08:33:09] 2025-07-24 06:32:49,956 | INFO     | PID=1979010 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-24 08:33:09] 2025-07-24 06:32:49,956 | INFO     | .. there are 8 such processes running
[2025-07-24 08:33:09] 2025-07-24 06:32:50,064 | INFO     | process IDs to be killed: [1987419] (in reverse order)
[2025-07-24 08:33:09] 2025-07-24 06:32:50,179 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 08:33:09] 2025-07-24 06:32:50,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 08:33:09] 2025-07-24 06:32:50,191 | INFO     | did not find any defunct processes belonging to 1987419
[2025-07-24 08:33:09] 2025-07-24 06:32:50,200 | INFO     | did not find any defunct processes belonging to 1987419
[2025-07-24 08:33:09] 2025-07-24 06:32:50,200 | INFO     | ready for new job
[2025-07-24 08:33:09] 2025-07-24 06:32:50,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 08:33:09] 2025-07-24 06:32:50,202 | INFO     | ***************************************
[2025-07-24 08:33:09] 2025-07-24 06:32:50,203 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 08:33:09] 2025-07-24 06:32:50,203 | INFO     | ***************************************
[2025-07-24 08:33:09] 2025-07-24 06:32:50,203 | INFO     | 
[2025-07-24 08:33:09] 2025-07-24 06:32:50,209 | INFO     | architecture information:
[2025-07-24 08:33:09] 2025-07-24 06:32:50,209 | INFO     | executing command: cat /etc/os-release
[2025-07-24 08:33:09] 2025-07-24 06:32:50,228 | INFO     | cat /etc/os-release:
[2025-07-24 08:33:09] NAME="CentOS Linux"
[2025-07-24 08:33:09] VERSION="7 (Core)"
[2025-07-24 08:33:09] ID="centos"
[2025-07-24 08:33:09] ID_LIKE="rhel fedora"
[2025-07-24 08:33:09] VERSION_ID="7"
[2025-07-24 08:33:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 08:33:09] ANSI_COLOR="0;31"
[2025-07-24 08:33:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 08:33:09] HOME_URL="https://www.centos.org/"
[2025-07-24 08:33:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 08:33:09] 
[2025-07-24 08:33:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 08:33:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 08:33:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 08:33:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 08:33:09] 
[2025-07-24 08:33:09] 2025-07-24 06:32:50,228 | INFO     | ***************************************
[2025-07-24 08:33:09] 2025-07-24 06:32:50,731 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-07-24 08:33:09] 2025-07-24 06:32:50,756 | INFO     | sufficient remaining disk space (1685891055616 B)
[2025-07-24 08:33:09] 2025-07-24 06:32:50,756 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 08:33:09] 2025-07-24 06:32:50,756 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 08:33:09] 2025-07-24 06:32:50,756 | INFO     | update_server=False
[2025-07-24 08:33:09] 2025-07-24 06:32:50,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 08:33:09] 2025-07-24 06:32:50,757 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 08:33:09] 2025-07-24 06:32:50,757 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-24 08:33:09] 2025-07-24 06:32:50,758 | INFO     | aborting loop
[2025-07-24 08:33:09] 2025-07-24 06:32:50,758 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 08:33:09] 2025-07-24 06:32:50,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 08:33:09] 2025-07-24 06:32:50,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 08:33:09] 2025-07-24 06:32:51,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 08:33:09] 2025-07-24 06:32:51,313 | INFO     | all data control threads have been joined
[2025-07-24 08:33:09] 2025-07-24 06:32:51,444 | INFO     | all job control threads have been joined
[2025-07-24 08:33:09] 2025-07-24 06:32:51,762 | INFO     | [job] job monitor thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:51,762 | INFO     | [job] retrieve thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,010 | INFO     | [payload] failed_post thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,072 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,246 | INFO     | all payload control threads have been joined
[2025-07-24 08:33:09] 2025-07-24 06:32:52,318 | INFO     | [data] control thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,450 | INFO     | [job] control thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,528 | INFO     | [job] validate thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,752 | INFO     | [data] copytool_in thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,770 | INFO     | [payload] validate_post thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:52,810 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:53,088 | INFO     | [data] copytool_out thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:53,191 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:53,252 | INFO     | [payload] control thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:53,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 08:33:09] 2025-07-24 06:32:53,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 08:33:09] 2025-07-24 06:32:54,314 | INFO     | [job] queue monitor thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:32:57,681 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:33:00,886 | INFO     | job.realtimelogging is not enabled
[2025-07-24 08:33:09] 2025-07-24 06:33:01,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 08:33:09] 2025-07-24 06:33:03,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152274605888)>', '<ExcThread(monitor, started 140151921551104)>']
[2025-07-24 08:33:09] 2025-07-24 06:33:04,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 08:33:09] 2025-07-24 06:33:04,821 | INFO     | [monitor] control thread has ended
[2025-07-24 08:33:09] 2025-07-24 06:33:08,849 | INFO     | all workflow threads have been joined
[2025-07-24 08:33:09] 2025-07-24 06:33:08,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 08:33:09] 2025-07-24 06:33:08,850 | INFO     | traces error code: 0
[2025-07-24 08:33:09] 2025-07-24 06:33:08,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 08:33:09] 2025-07-24 06:33:08,981 [wrapper] ==== pilot stdout END ====
[2025-07-24 08:33:09] 2025-07-24 06:33:08,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 08:33:09] 2025-07-24 06:33:08,989 [wrapper] pilotpid: 1979010
[2025-07-24 08:33:09] 2025-07-24 06:33:08,992 [wrapper] Pilot exit status: 0
[2025-07-24 08:33:09] 2025-07-24 06:33:09,005 [wrapper] pandaids: 6743232420
[2025-07-24 08:33:09] 2025-07-24 06:33:09,082 [wrapper] cleanup supervisor_pilot 2197338 1979011
[2025-07-24 08:33:09] 2025-07-24 06:33:09,086 [wrapper] Test setup, not cleaning
[2025-07-24 08:33:09] 2025-07-24 06:33:09,090 [wrapper] apfmon messages muted
[2025-07-24 08:33:09] 2025-07-24 06:33:09,093 [wrapper] ==== wrapper stdout END ====
[2025-07-24 08:33:09] 2025-07-24 06:33:09,096 [wrapper] ==== wrapper stderr END ====
[2025-07-24 08:33:09]  *** Error codes and diagnostics ***
[2025-07-24 08:33:09]     "exeErrorCode": 0,
[2025-07-24 08:33:09]     "exeErrorDiag": "",
[2025-07-24 08:33:09]     "pilotErrorCode": 0,
[2025-07-24 08:33:09]     "pilotErrorDiag": "",
[2025-07-24 08:33:09]  *** Listing of results directory ***
[2025-07-24 08:33:09] total 523316
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc      5112 Jul 23 18:44 queuedata.json
[2025-07-24 08:33:09] -rwx------ 1 boinc boinc     36292 Jul 23 18:45 runpilot2-wrapper.sh
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc    530466 Jul 23 18:45 pilot3.tar.gz
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc       100 Jul 24 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 08:33:09] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 07:14 run_atlas
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc       105 Jul 24 07:14 job.xml
[2025-07-24 08:33:09] -rw-r--r-- 2 boinc boinc 305047933 Jul 24 07:14 EVNT.45668886._000042.pool.root.1
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc      6664 Jul 24 07:14 init_data.xml
[2025-07-24 08:33:09] -rw-r--r-- 2 boinc boinc     15095 Jul 24 07:14 start_atlas.sh
[2025-07-24 08:33:09] drwxrwx--x 2 boinc boinc      4096 Jul 24 07:14 shared
[2025-07-24 08:33:09] -rw-r--r-- 2 boinc boinc    542872 Jul 24 07:14 input.tar.gz
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc         0 Jul 24 07:14 boinc_lockfile
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc      2540 Jul 24 07:14 pandaJob.out
[2025-07-24 08:33:09] -rw------- 1 boinc boinc    979632 Jul 24 07:14 agis_schedconf.cvmfs.json
[2025-07-24 08:33:09] -rw------- 1 boinc boinc   1593041 Jul 24 07:14 agis_ddmendpoints.agis.ALL.json
[2025-07-24 08:33:09] drwx------ 4 boinc boinc      4096 Jul 24 07:14 pilot3
[2025-07-24 08:33:09] -rw------- 1 boinc boinc        95 Jul 24 08:32 pilot_heartbeat.json
[2025-07-24 08:33:09] -rw------- 1 boinc boinc 225312053 Jul 24 08:32 HITS.45668889._001082.pool.root.1
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc       530 Jul 24 08:32 boinc_task_state.xml
[2025-07-24 08:33:09] -rw------- 1 boinc boinc      1017 Jul 24 08:32 memory_monitor_summary.json
[2025-07-24 08:33:09] -rw------- 1 boinc boinc    357601 Jul 24 08:32 log.45668889._001082.job.log.tgz.1
[2025-07-24 08:33:09] -rw------- 1 boinc boinc      7784 Jul 24 08:32 heartbeat.json
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc      8192 Jul 24 08:33 boinc_mmap_file
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc        27 Jul 24 08:33 wrapper_checkpoint.txt
[2025-07-24 08:33:09] -rw------- 1 boinc boinc      4555 Jul 24 08:33 pilotlog.txt
[2025-07-24 08:33:09] -rw------- 1 boinc boinc    458584 Jul 24 08:33 log.45668889._001082.job.log.1
[2025-07-24 08:33:09] -rw------- 1 boinc boinc       357 Jul 24 08:33 output.list
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc       620 Jul 24 08:33 runtime_log
[2025-07-24 08:33:09] -rw------- 1 boinc boinc    839680 Jul 24 08:33 result.tar.gz
[2025-07-24 08:33:09] -rw------- 1 boinc boinc       664 Jul 24 08:33 wVILDm0lry7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYwLLDmHe2pHo.diag
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc      8721 Jul 24 08:33 runtime_log.err
[2025-07-24 08:33:09] -rw-r--r-- 1 boinc boinc     21580 Jul 24 08:33 stderr.txt
[2025-07-24 08:33:09] HITS file was successfully produced:
[2025-07-24 08:33:09] -rw------- 1 boinc boinc 225312053 Jul 24 08:32 shared/HITS.pool.root.1
[2025-07-24 08:33:09]  *** Contents of shared directory: ***
[2025-07-24 08:33:09] total 519308
[2025-07-24 08:33:09] -rw-r--r-- 2 boinc boinc 305047933 Jul 24 07:14 ATLAS.root_0
[2025-07-24 08:33:09] -rw-r--r-- 2 boinc boinc     15095 Jul 24 07:14 start_atlas.sh
[2025-07-24 08:33:09] -rw-r--r-- 2 boinc boinc    542872 Jul 24 07:14 input.tar.gz
[2025-07-24 08:33:09] -rw------- 1 boinc boinc 225312053 Jul 24 08:32 HITS.pool.root.1
[2025-07-24 08:33:09] -rw------- 1 boinc boinc    839680 Jul 24 08:33 result.tar.gz
08:33:10 (1975036): run_atlas exited; CPU time 50899.990076
08:33:10 (1975036): called boinc_finish(0)

</stderr_txt>
]]>

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