Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:22:14 (1499820): wrapper (7.7.26015): starting
11:22:14 (1499820): wrapper: running run_atlas (--nthreads 3)
[2025-07-24 11:22:14] Arguments: --nthreads 3
[2025-07-24 11:22:14] Threads: 3
[2025-07-24 11:22:14] Checking for CVMFS
[2025-07-24 11:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 11:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 11:22:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 11:22:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 11:22:15] 2.9.2.0 685657 3659 68264 148689 1 56 34902980 36864000 0 130560 0 2106556 99.986 136681 2724 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-24 11:22:15] CVMFS is ok
[2025-07-24 11:22:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 11:22:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 11:22:15] Further information can be found at the LHC@home message board.
[2025-07-24 11:22:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 11:22:15] Checking for apptainer binary...
[2025-07-24 11:22:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 11:22:15] Running /usr/bin/apptainer --version
[2025-07-24 11:22:15] apptainer version 1.4.1-1.1
[2025-07-24 11:22:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 11:22:15] thA333
[2025-07-24 11:22:15] apptainer works
[2025-07-24 11:22:15] Set ATHENA_PROC_NUMBER=3
[2025-07-24 11:22:15] Set ATHENA_CORE_NUMBER=3
[2025-07-24 11:22:15] Starting ATLAS job with PandaID=6741687663
[2025-07-24 11:22:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 13:29:36]  *** The last 200 lines of the pilot log: ***
[2025-07-24 13:29:36] 2025-07-24 11:28:55,107 | WARNING  | process 1509982 can no longer be monitored (due to stat problems) - aborting
[2025-07-24 13:29:36] 2025-07-24 11:28:55,107 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6741687663/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 13:29:36] 2025-07-24 11:28:55,159 | INFO     | number of running child processes to parent process 1509982: 1
[2025-07-24 13:29:36] 2025-07-24 11:28:55,159 | INFO     | maximum number of monitored processes: 6
[2025-07-24 13:29:36] 2025-07-24 11:28:56,889 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 13:29:36] 2025-07-24 11:28:56,890 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4363.232416666667
[2025-07-24 13:29:36] 2025-07-24 11:28:56,891 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6741687663/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 13:29:36] 2025-07-24 11:28:56,891 | INFO     | extracted standard info from prmon json
[2025-07-24 13:29:36] 2025-07-24 11:28:56,891 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:29:36] 2025-07-24 11:28:56,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:29:36] 2025-07-24 11:28:56,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:29:36] 2025-07-24 11:28:56,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:29:36] 2025-07-24 11:28:56,892 | INFO     | fitting pss+swap vs Time
[2025-07-24 13:29:36] 2025-07-24 11:28:56,892 | INFO     | sum of square deviations: 591171740.9919349
[2025-07-24 13:29:36] 2025-07-24 11:28:56,892 | INFO     | sum of deviations: -4937964983.766127
[2025-07-24 13:29:36] 2025-07-24 11:28:56,892 | INFO     | mean x: 1753352724.5080645
[2025-07-24 13:29:36] 2025-07-24 11:28:56,892 | INFO     | mean y: 2404392.2661290322
[2025-07-24 13:29:36] 2025-07-24 11:28:56,892 | INFO     | -- intersect: 14647885151.01213
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | intersect: 14647885151.01213
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | chi2: 1.6420618771593891
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | sum of square deviations: 522500990.9915964
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | sum of deviations: -4422173218.957984
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | mean x: 1753352572.0084033
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | mean y: 2405538.9579831935
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | -- intersect: 14841858326.620478
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | intersect: 14841858326.620478
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | chi2: 1.6417078734735153
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | current chi2=1.6417078734735153 (change=0.02155848636387482 %)
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | right removable region: 118
[2025-07-24 13:29:36] 2025-07-24 11:28:56,893 | INFO     | sum of square deviations: 522500380.9915964
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | sum of deviations: -21105840768.361347
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | mean x: 1753352877.0084033
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | mean y: 2439437.3613445377
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | -- intersect: 70827242593.78775
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | intersect: 70827242593.78775
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | chi2: 0.12752501501416144
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | current chi2=0.12752501501416144 (change=92.23384838366947 %)
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | sum of square deviations: 459364008.4912284
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | sum of deviations: -15813303755.070175
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | mean x: 1753353029.508772
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | mean y: 2426636.0701754387
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | -- intersect: 60360451063.28032
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | intersect: 60360451063.28032
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | chi2: 0.10650353524246282
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | current chi2=0.10650353524246282 (change=16.48420097763895 %)
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | left removable region: 20
[2025-07-24 13:29:36] 2025-07-24 11:28:56,894 | INFO     | sum of square deviations: 291814576.48979646
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | sum of deviations: -7473638046.775512
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | mean x: 1753353151.510204
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | mean y: 2407098.775510204
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | -- intersect: 44907384020.03153
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | intersect: 44907384020.03153
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | chi2: 0.06991785430001328
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | -- intersect: 44907384020.03153
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | current memory leak: -25.61 B/s (using 98 data points, chi2=0.07)
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | could have reported an average CPU frequency of 4319 MHz (8 samples)
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | ..............................
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . Timing measurements:
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . get job = 0 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . initial setup = 1 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . payload setup = 6 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . stage-in = 0 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . payload execution = 7557 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . stage-out = 0 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | . log creation = 0 s
[2025-07-24 13:29:36] 2025-07-24 11:28:56,895 | INFO     | ..............................
[2025-07-24 13:29:36] 2025-07-24 11:28:57,186 | INFO     | 
[2025-07-24 13:29:36] 2025-07-24 11:28:57,186 | INFO     | job summary report
[2025-07-24 13:29:36] 2025-07-24 11:28:57,186 | INFO     | --------------------------------------------------
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | PanDA job id: 6741687663
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | task id: 45697523
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | errors: (none)
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | pilot state: finished 
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | transexitcode: 0
[2025-07-24 13:29:36] 2025-07-24 11:28:57,187 | INFO     | exeerrorcode: 0
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | exeerrordiag: 
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | exitcode: 0
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | exitmsg: OK
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | cpuconsumptiontime: 22020 s
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | nevents: 400
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | neventsw: 0
[2025-07-24 13:29:36] 2025-07-24 11:28:57,188 | INFO     | pid: 1509982
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | pgrp: 1509982
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | corecount: 3
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | event service: False
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | sizes: {0: 2397556, 6: 2397818, 10: 2397846, 7568: 2434596, 7574: 2434734}
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | --------------------------------------------------
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | 
[2025-07-24 13:29:36] 2025-07-24 11:28:57,189 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 13:29:36] 2025-07-24 11:28:57,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 13:29:36] 2025-07-24 11:28:57,204 | INFO     | job 6741687663 has completed (purged errors)
[2025-07-24 13:29:36] 2025-07-24 11:28:57,204 | INFO     | overall cleanup function is called
[2025-07-24 13:29:36] 2025-07-24 11:28:58,210 | INFO     | --- collectZombieJob: --- 10, [1509982]
[2025-07-24 13:29:36] 2025-07-24 11:28:58,210 | INFO     | zombie collector waiting for pid 1509982
[2025-07-24 13:29:36] 2025-07-24 11:28:58,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 13:29:36] 2025-07-24 11:28:58,212 | INFO     | collected zombie processes
[2025-07-24 13:29:36] 2025-07-24 11:28:58,212 | INFO     | will attempt to kill all subprocesses of pid=1509982
[2025-07-24 13:29:36] 2025-07-24 11:28:58,251 | INFO     | process IDs to be killed: [1509982] (in reverse order)
[2025-07-24 13:29:36] 2025-07-24 11:28:58,276 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 13:29:36] 2025-07-24 11:28:58,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 13:29:36] 2025-07-24 11:28:58,277 | INFO     | did not find any defunct processes belonging to 1509982
[2025-07-24 13:29:36] 2025-07-24 11:28:58,278 | INFO     | did not find any defunct processes belonging to 1509982
[2025-07-24 13:29:36] 2025-07-24 11:28:58,278 | INFO     | ready for new job
[2025-07-24 13:29:36] 2025-07-24 11:28:58,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 13:29:36] 2025-07-24 11:28:58,278 | INFO     | ***************************************
[2025-07-24 13:29:36] 2025-07-24 11:28:58,278 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 13:29:36] 2025-07-24 11:28:58,279 | INFO     | ***************************************
[2025-07-24 13:29:36] 2025-07-24 11:28:58,279 | INFO     | 
[2025-07-24 13:29:36] 2025-07-24 11:28:58,279 | INFO     | architecture information:
[2025-07-24 13:29:36] 2025-07-24 11:28:58,279 | INFO     | executing command: cat /etc/os-release
[2025-07-24 13:29:36] 2025-07-24 11:28:58,288 | INFO     | cat /etc/os-release:
[2025-07-24 13:29:36] NAME="CentOS Linux"
[2025-07-24 13:29:36] VERSION="7 (Core)"
[2025-07-24 13:29:36] ID="centos"
[2025-07-24 13:29:36] ID_LIKE="rhel fedora"
[2025-07-24 13:29:36] VERSION_ID="7"
[2025-07-24 13:29:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 13:29:36] ANSI_COLOR="0;31"
[2025-07-24 13:29:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 13:29:36] HOME_URL="https://www.centos.org/"
[2025-07-24 13:29:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 13:29:36] 
[2025-07-24 13:29:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 13:29:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 13:29:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 13:29:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 13:29:36] 
[2025-07-24 13:29:36] 2025-07-24 11:28:58,288 | INFO     | ***************************************
[2025-07-24 13:29:36] 2025-07-24 11:28:58,791 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-24 13:29:36] 2025-07-24 11:28:58,804 | INFO     | sufficient remaining disk space (220625633280 B)
[2025-07-24 13:29:36] 2025-07-24 11:28:58,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | INFO     | update_server=False
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | INFO     | aborting loop
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 13:29:36] 2025-07-24 11:28:58,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 13:29:36] 2025-07-24 11:28:58,896 | INFO     | all payload control threads have been joined
[2025-07-24 13:29:36] 2025-07-24 11:28:59,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 13:29:36] 2025-07-24 11:28:59,334 | INFO     | all job control threads have been joined
[2025-07-24 13:29:36] 2025-07-24 11:28:59,570 | INFO     | all data control threads have been joined
[2025-07-24 13:29:36] 2025-07-24 11:28:59,810 | INFO     | [job] retrieve thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:28:59,811 | INFO     | [job] queue monitor thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:28:59,812 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:28:59,812 | INFO     | [job] job monitor thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:28:59,902 | INFO     | [payload] control thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:28:59,927 | INFO     | [payload] validate_post thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:28:59,989 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:00,008 | INFO     | [job] validate thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:00,340 | INFO     | [job] control thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:00,576 | INFO     | [data] control thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:00,739 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:00,976 | INFO     | [payload] failed_post thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:01,073 | INFO     | [data] copytool_in thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:01,282 | INFO     | [data] copytool_out thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:01,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 13:29:36] 2025-07-24 11:29:05,808 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:09,003 | INFO     | job.realtimelogging is not enabled
[2025-07-24 13:29:36] 2025-07-24 11:29:10,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 13:29:36] 2025-07-24 11:29:10,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139737923712832)>', '<ExcThread(monitor, started 139737247487744)>']
[2025-07-24 13:29:36] 2025-07-24 11:29:10,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 13:29:36] 2025-07-24 11:29:10,869 | INFO     | [monitor] control thread has ended
[2025-07-24 13:29:36] 2025-07-24 11:29:15,283 | INFO     | all workflow threads have been joined
[2025-07-24 13:29:36] 2025-07-24 11:29:15,284 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 13:29:36] 2025-07-24 11:29:15,284 | INFO     | traces error code: 0
[2025-07-24 13:29:36] 2025-07-24 11:29:15,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 13:29:36] 2025-07-24 11:29:15,331 [wrapper] ==== pilot stdout END ====
[2025-07-24 13:29:36] 2025-07-24 11:29:15,334 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 13:29:36] 2025-07-24 11:29:15,337 [wrapper] pilotpid: 1503471
[2025-07-24 13:29:36] 2025-07-24 11:29:15,340 [wrapper] Pilot exit status: 0
[2025-07-24 13:29:36] 2025-07-24 11:29:15,348 [wrapper] pandaids: 6741687663
[2025-07-24 13:29:36] 2025-07-24 11:29:15,364 [wrapper] cleanup supervisor_pilot 1524935 1503472
[2025-07-24 13:29:36] 2025-07-24 11:29:15,367 [wrapper] Test setup, not cleaning
[2025-07-24 13:29:36] 2025-07-24 11:29:15,369 [wrapper] apfmon messages muted
[2025-07-24 13:29:36] 2025-07-24 11:29:15,372 [wrapper] ==== wrapper stdout END ====
[2025-07-24 13:29:36] 2025-07-24 11:29:15,375 [wrapper] ==== wrapper stderr END ====
[2025-07-24 13:29:36]  *** Error codes and diagnostics ***
[2025-07-24 13:29:36]     "exeErrorCode": 0,
[2025-07-24 13:29:36]     "exeErrorDiag": "",
[2025-07-24 13:29:36]     "pilotErrorCode": 0,
[2025-07-24 13:29:36]     "pilotErrorDiag": "",
[2025-07-24 13:29:36]  *** Listing of results directory ***
[2025-07-24 13:29:36] total 570764
[2025-07-24 13:29:36] -rwx------ 1 boinc boinc     36292 Jul 21 22:41 runpilot2-wrapper.sh
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc    530466 Jul 21 22:41 pilot3.tar.gz
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc      5112 Jul 21 22:43 queuedata.json
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc       100 Jul 24 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 13:29:36] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 11:22 run_atlas
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc       105 Jul 24 11:22 job.xml
[2025-07-24 13:29:36] -rw-r--r-- 2 boinc boinc 317734717 Jul 24 11:22 EVNT.45697521._000102.pool.root.1
[2025-07-24 13:29:36] -rw-r--r-- 2 boinc boinc    542904 Jul 24 11:22 input.tar.gz
[2025-07-24 13:29:36] -rw-r--r-- 2 boinc boinc     15095 Jul 24 11:22 start_atlas.sh
[2025-07-24 13:29:36] drwxrwx--x 2 boinc boinc      4096 Jul 24 11:22 shared
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc         0 Jul 24 11:22 boinc_setup_complete
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc      6199 Jul 24 11:22 init_data.xml
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc         0 Jul 24 11:22 boinc_lockfile
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc      2635 Jul 24 11:22 pandaJob.out
[2025-07-24 13:29:36] -rw------- 1 boinc boinc    978947 Jul 24 11:22 agis_schedconf.cvmfs.json
[2025-07-24 13:29:36] -rw------- 1 boinc boinc   1593041 Jul 24 11:22 agis_ddmendpoints.agis.ALL.json
[2025-07-24 13:29:36] drwx------ 4 boinc boinc      4096 Jul 24 11:22 pilot3
[2025-07-24 13:29:36] -rw------- 1 boinc boinc        95 Jul 24 13:28 pilot_heartbeat.json
[2025-07-24 13:29:36] -rw------- 1 boinc boinc 260901364 Jul 24 13:28 HITS.45697523._002535.pool.root.1
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc       529 Jul 24 13:28 boinc_task_state.xml
[2025-07-24 13:29:36] -rw------- 1 boinc boinc      1017 Jul 24 13:28 memory_monitor_summary.json
[2025-07-24 13:29:36] -rw------- 1 boinc boinc    251921 Jul 24 13:28 log.45697523._002535.job.log.tgz.1
[2025-07-24 13:29:36] -rw------- 1 boinc boinc      7753 Jul 24 13:28 heartbeat.json
[2025-07-24 13:29:36] -rw------- 1 boinc boinc      4556 Jul 24 13:29 pilotlog.txt
[2025-07-24 13:29:36] -rw------- 1 boinc boinc    717872 Jul 24 13:29 log.45697523._002535.job.log.1
[2025-07-24 13:29:36] -rw------- 1 boinc boinc       357 Jul 24 13:29 output.list
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc       620 Jul 24 13:29 runtime_log
[2025-07-24 13:29:36] -rw------- 1 boinc boinc    993280 Jul 24 13:29 result.tar.gz
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc      8734 Jul 24 13:29 runtime_log.err
[2025-07-24 13:29:36] -rw------- 1 boinc boinc       659 Jul 24 13:29 oiSMDm4UCy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDNGLDmRdonMn.diag
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc      8192 Jul 24 13:29 boinc_mmap_file
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc        27 Jul 24 13:29 wrapper_checkpoint.txt
[2025-07-24 13:29:36] -rw-r--r-- 1 boinc boinc     21104 Jul 24 13:29 stderr.txt
[2025-07-24 13:29:36] HITS file was successfully produced:
[2025-07-24 13:29:36] -rw------- 1 boinc boinc 260901364 Jul 24 13:28 shared/HITS.pool.root.1
[2025-07-24 13:29:36]  *** Contents of shared directory: ***
[2025-07-24 13:29:36] total 566604
[2025-07-24 13:29:36] -rw-r--r-- 2 boinc boinc 317734717 Jul 24 11:22 ATLAS.root_0
[2025-07-24 13:29:36] -rw-r--r-- 2 boinc boinc    542904 Jul 24 11:22 input.tar.gz
[2025-07-24 13:29:36] -rw-r--r-- 2 boinc boinc     15095 Jul 24 11:22 start_atlas.sh
[2025-07-24 13:29:36] -rw------- 1 boinc boinc 260901364 Jul 24 13:28 HITS.pool.root.1
[2025-07-24 13:29:36] -rw------- 1 boinc boinc    993280 Jul 24 13:29 result.tar.gz
13:29:38 (1499820): run_atlas exited; CPU time 22055.636675
13:29:38 (1499820): called boinc_finish(0)

</stderr_txt>
]]>

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