Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:44:09 (3726917): wrapper (7.7.26015): starting
14:44:09 (3726917): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 14:44:09] Arguments: --nthreads 8
[2025-07-23 14:44:09] Threads: 8
[2025-07-23 14:44:09] Checking for CVMFS
[2025-07-23 14:44:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 14:44:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 14:44:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 14:44:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 14:44:09] 2.12.6.0 2754702 12981 538828 148668 0 936 23674353 32935937 37575 16776704 0 167533543 99.596 195959115 29039 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-23 14:44:09] CVMFS is ok
[2025-07-23 14:44:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 14:44:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 14:44:09] Further information can be found at the LHC@home message board.
[2025-07-23 14:44:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 14:44:09] Checking for apptainer binary...
[2025-07-23 14:44:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 14:44:09] Running /usr/bin/apptainer --version
[2025-07-23 14:44:09] apptainer version 1.4.1-1.el9
[2025-07-23 14:44:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 14:44:10] c7-9-14.aglt2.org
[2025-07-23 14:44:10] apptainer works
[2025-07-23 14:44:10] Set ATHENA_PROC_NUMBER=8
[2025-07-23 14:44:10] Set ATHENA_CORE_NUMBER=8
[2025-07-23 14:44:10] Starting ATLAS job with PandaID=6741883542
[2025-07-23 14:44:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 16:21:38]  *** The last 200 lines of the pilot log: ***
[2025-07-23 16:21:38] 2025-07-23 20:20:35,696 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 16:21:38] 2025-07-23 20:20:36,059 | INFO     | monitor loop #390: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:36,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:36,124 | INFO     | job 6741883542 has state=finished
[2025-07-23 16:21:38] 2025-07-23 20:20:36,125 | INFO     | preparing for final server update for job 6741883542 in state='finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:36,125 | INFO     | this job has now completed (state=finished)
[2025-07-23 16:21:38] 2025-07-23 20:20:36,125 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 16:21:38] 2025-07-23 20:20:36,125 | INFO     | log transfer has been attempted: DONE
[2025-07-23 16:21:38] 2025-07-23 20:20:36,125 | INFO     | job 6741883542 has finished - writing final server update
[2025-07-23 16:21:38] 2025-07-23 20:20:36,125 | INFO     | total number of processed events: 400 (read)
[2025-07-23 16:21:38] 2025-07-23 20:20:36,139 | INFO     | executing command: lscpu
[2025-07-23 16:21:38] 2025-07-23 20:20:36,394 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 16:21:38] 2025-07-23 20:20:38,564 | INFO     | monitor loop #391: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:38,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:41,068 | INFO     | monitor loop #392: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:41,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:43,578 | INFO     | monitor loop #393: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:43,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:44,918 | INFO     | PID=3735310 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 16:21:38] 2025-07-23 20:20:44,919 | INFO     | .. there are 46 such processes running
[2025-07-23 16:21:38] 2025-07-23 20:20:46,083 | INFO     | monitor loop #394: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:46,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:48,588 | INFO     | monitor loop #395: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:48,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:51,093 | INFO     | monitor loop #396: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:51,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:53,602 | INFO     | monitor loop #397: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:53,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:56,107 | INFO     | monitor loop #398: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:56,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:20:58,615 | INFO     | monitor loop #399: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:20:58,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:21:01,121 | INFO     | monitor loop #400: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:21:01,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:21:03,630 | INFO     | monitor loop #401: job 0:6741883542 is in state 'finished'
[2025-07-23 16:21:38] 2025-07-23 20:21:03,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,341 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 16:21:38] 2025-07-23 20:21:05,355 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3796.2403828125007
[2025-07-23 16:21:38] 2025-07-23 20:21:05,419 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6741883542/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,419 | INFO     | extracted standard info from prmon json
[2025-07-23 16:21:38] 2025-07-23 20:21:05,419 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 16:21:38] 2025-07-23 20:21:05,419 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 16:21:38] 2025-07-23 20:21:05,420 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 16:21:38] 2025-07-23 20:21:05,420 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 16:21:38] 2025-07-23 20:21:05,421 | INFO     | fitting pss+swap vs Time
[2025-07-23 16:21:38] 2025-07-23 20:21:05,421 | INFO     | sum of square deviations: 211285822.0
[2025-07-23 16:21:38] 2025-07-23 20:21:05,421 | INFO     | sum of deviations: -5922710972.5
[2025-07-23 16:21:38] 2025-07-23 20:21:05,421 | INFO     | mean x: 1753299250.5
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | mean y: 2244530.125
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | -- intersect: 49150287738.686226
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | intersect: 49150287738.686226
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | chi2: 0.05903379770051921
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | -- intersect: 49150287738.686226
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | current memory leak: -28.03 B/s (using 88 data points, chi2=0.06)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | could have reported an average CPU frequency of 3785 MHz (7 samples)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | ..............................
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . Timing measurements:
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . get job = 0 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . initial setup = 2 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . payload setup = 6 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . stage-in = 0 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . payload execution = 5742 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . stage-out = 2 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | . log creation = 0 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,422 | INFO     | ..............................
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | 
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | job summary report
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | --------------------------------------------------
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | PanDA job id: 6741883542
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | task id: 45697472
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | errors: (none)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | pilot state: finished 
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | transexitcode: 0
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | exeerrorcode: 0
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | exeerrordiag: 
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | exitcode: 0
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | exitmsg: OK
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | cpuconsumptiontime: 33110 s
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | nevents: 400
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | neventsw: 0
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | pid: 3743808
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | pgrp: 3743808
[2025-07-23 16:21:38] 2025-07-23 20:21:05,528 | INFO     | corecount: 8
[2025-07-23 16:21:38] 2025-07-23 20:21:05,529 | INFO     | event service: False
[2025-07-23 16:21:38] 2025-07-23 20:21:05,529 | INFO     | sizes: {0: 2397256, 1: 2397511, 6: 2397773, 11: 2397801, 5753: 2424710, 5754: 2424709, 5757: 2433891, 5758: 2433947, 5788: 2434141}
[2025-07-23 16:21:38] 2025-07-23 20:21:05,529 | INFO     | --------------------------------------------------
[2025-07-23 16:21:38] 2025-07-23 20:21:05,529 | INFO     | 
[2025-07-23 16:21:38] 2025-07-23 20:21:05,529 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,726 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,727 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,727 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 16:21:38] 2025-07-23 20:21:05,727 | INFO     | job 6741883542 has completed (purged errors)
[2025-07-23 16:21:38] 2025-07-23 20:21:05,727 | INFO     | overall cleanup function is called
[2025-07-23 16:21:38] 2025-07-23 20:21:06,734 | INFO     | --- collectZombieJob: --- 10, [3743808]
[2025-07-23 16:21:38] 2025-07-23 20:21:06,735 | INFO     | zombie collector waiting for pid 3743808
[2025-07-23 16:21:38] 2025-07-23 20:21:06,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 16:21:38] 2025-07-23 20:21:06,736 | INFO     | collected zombie processes
[2025-07-23 16:21:38] 2025-07-23 20:21:06,737 | INFO     | will attempt to kill all subprocesses of pid=3743808
[2025-07-23 16:21:38] 2025-07-23 20:21:07,523 | INFO     | process IDs to be killed: [3743808] (in reverse order)
[2025-07-23 16:21:38] 2025-07-23 20:21:08,021 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 16:21:38] 2025-07-23 20:21:08,023 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 16:21:38] 2025-07-23 20:21:08,046 | INFO     | did not find any defunct processes belonging to 3743808
[2025-07-23 16:21:38] 2025-07-23 20:21:08,067 | INFO     | did not find any defunct processes belonging to 3743808
[2025-07-23 16:21:38] 2025-07-23 20:21:08,068 | INFO     | ready for new job
[2025-07-23 16:21:38] 2025-07-23 20:21:08,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 16:21:38] 2025-07-23 20:21:08,069 | INFO     | ***************************************
[2025-07-23 16:21:38] 2025-07-23 20:21:08,069 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 16:21:38] 2025-07-23 20:21:08,069 | INFO     | ***************************************
[2025-07-23 16:21:38] 2025-07-23 20:21:08,069 | INFO     | 
[2025-07-23 16:21:38] 2025-07-23 20:21:08,092 | INFO     | architecture information:
[2025-07-23 16:21:38] 2025-07-23 20:21:08,096 | INFO     | executing command: cat /etc/os-release
[2025-07-23 16:21:38] 2025-07-23 20:21:08,114 | INFO     | cat /etc/os-release:
[2025-07-23 16:21:38] NAME="CentOS Linux"
[2025-07-23 16:21:38] VERSION="7 (Core)"
[2025-07-23 16:21:38] ID="centos"
[2025-07-23 16:21:38] ID_LIKE="rhel fedora"
[2025-07-23 16:21:38] VERSION_ID="7"
[2025-07-23 16:21:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 16:21:38] ANSI_COLOR="0;31"
[2025-07-23 16:21:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 16:21:38] HOME_URL="https://www.centos.org/"
[2025-07-23 16:21:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 16:21:38] 
[2025-07-23 16:21:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 16:21:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 16:21:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 16:21:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 16:21:38] 
[2025-07-23 16:21:38] 2025-07-23 20:21:08,114 | INFO     | ***************************************
[2025-07-23 16:21:38] 2025-07-23 20:21:08,618 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-23 16:21:38] 2025-07-23 20:21:08,694 | INFO     | sufficient remaining disk space (73585917952 B)
[2025-07-23 16:21:38] 2025-07-23 20:21:08,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 16:21:38] 2025-07-23 20:21:08,694 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 16:21:38] 2025-07-23 20:21:08,694 | INFO     | update_server=False
[2025-07-23 16:21:38] 2025-07-23 20:21:08,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 16:21:38] 2025-07-23 20:21:08,699 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 16:21:38] 2025-07-23 20:21:08,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 16:21:38] 2025-07-23 20:21:09,262 | INFO     | all data control threads have been joined
[2025-07-23 16:21:38] 2025-07-23 20:21:09,293 | INFO     | all payload control threads have been joined
[2025-07-23 16:21:38] 2025-07-23 20:21:09,501 | INFO     | all job control threads have been joined
[2025-07-23 16:21:38] 2025-07-23 20:21:09,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 16:21:38] 2025-07-23 20:21:09,660 | INFO     | aborting loop
[2025-07-23 16:21:38] 2025-07-23 20:21:09,701 | INFO     | [job] retrieve thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:09,883 | INFO     | [payload] validate_post thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:09,939 | INFO     | [payload] failed_post thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:09,989 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,003 | INFO     | [job] validate thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,183 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,269 | INFO     | [data] control thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,299 | INFO     | [payload] control thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,507 | INFO     | [job] control thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,518 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 16:21:38] 2025-07-23 20:21:10,666 | INFO     | [job] job monitor thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,710 | INFO     | [data] copytool_out thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:10,930 | INFO     | [data] copytool_in thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:11,548 | INFO     | [job] queue monitor thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:12,842 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:19,288 | INFO     | job.realtimelogging is not enabled
[2025-07-23 16:21:38] 2025-07-23 20:21:20,293 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 16:21:38] 2025-07-23 20:21:22,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139881410250560)>', '<ExcThread(monitor, started 139881128888064)>']
[2025-07-23 16:21:38] 2025-07-23 20:21:27,260 | INFO     | all workflow threads have been joined
[2025-07-23 16:21:38] 2025-07-23 20:21:27,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 16:21:38] 2025-07-23 20:21:27,261 | INFO     | traces error code: 0
[2025-07-23 16:21:38] 2025-07-23 20:21:27,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 16:21:38] 2025-07-23 20:21:37,649 | INFO     | PID=3735310 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 16:21:38] 2025-07-23 20:21:37,649 | INFO     | .. there are 46 such processes running
[2025-07-23 16:21:38] 2025-07-23 20:21:37,650 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 16:21:38] 2025-07-23 20:21:37,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 16:21:38] 2025-07-23 20:21:37,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 16:21:38] 2025-07-23 20:21:37,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 16:21:38] 2025-07-23 20:21:37,650 | INFO     | [monitor] control thread has ended
[2025-07-23 16:21:38] 2025-07-23 20:21:37,825 [wrapper] ==== pilot stdout END ====
[2025-07-23 16:21:38] 2025-07-23 20:21:37,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 16:21:38] 2025-07-23 20:21:37,905 [wrapper] pilotpid: 3735310
[2025-07-23 16:21:38] 2025-07-23 20:21:37,925 [wrapper] Pilot exit status: 0
[2025-07-23 16:21:38] 2025-07-23 20:21:37,992 [wrapper] pandaids: 6741883542
[2025-07-23 16:21:38] 2025-07-23 20:21:38,210 [wrapper] cleanup supervisor_pilot  101256 3735311
[2025-07-23 16:21:38] 2025-07-23 20:21:38,226 [wrapper] Test setup, not cleaning
[2025-07-23 16:21:38] 2025-07-23 20:21:38,251 [wrapper] apfmon messages muted
[2025-07-23 16:21:38] 2025-07-23 20:21:38,270 [wrapper] ==== wrapper stdout END ====
[2025-07-23 16:21:38] 2025-07-23 20:21:38,291 [wrapper] ==== wrapper stderr END ====
[2025-07-23 16:21:38]  *** Error codes and diagnostics ***
[2025-07-23 16:21:38]     "exeErrorCode": 0,
[2025-07-23 16:21:38]     "exeErrorDiag": "",
[2025-07-23 16:21:38]     "pilotErrorCode": 0,
[2025-07-23 16:21:38]     "pilotErrorDiag": "",
[2025-07-23 16:21:38]  *** Listing of results directory ***
[2025-07-23 16:21:38] total 609132
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 03:36 queuedata.json
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 03:38 pilot3.tar.gz
[2025-07-23 16:21:38] -rwx------. 1 boincer umatlas     36292 Jul 23 03:39 runpilot2-wrapper.sh
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas       100 Jul 23 14:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 16:21:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 14:44 run_atlas
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas       105 Jul 23 14:44 job.xml
[2025-07-23 16:21:38] -rw-r--r--. 2 boincer umatlas 336308212 Jul 23 14:44 EVNT.45697470._000182.pool.root.1
[2025-07-23 16:21:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 14:44 start_atlas.sh
[2025-07-23 16:21:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 14:44 shared
[2025-07-23 16:21:38] -rw-r--r--. 2 boincer umatlas    542903 Jul 23 14:44 input.tar.gz
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas         0 Jul 23 14:44 boinc_lockfile
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas      2611 Jul 23 14:44 pandaJob.out
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas    978487 Jul 23 14:44 agis_schedconf.cvmfs.json
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas   1593041 Jul 23 14:44 agis_ddmendpoints.agis.ALL.json
[2025-07-23 16:21:38] drwx------. 4 boincer umatlas      4096 Jul 23 14:44 pilot3
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas      7160 Jul 23 16:10 init_data.xml
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas 281821638 Jul 23 16:19 HITS.45697472._003975.pool.root.1
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas       529 Jul 23 16:19 boinc_task_state.xml
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas      1037 Jul 23 16:20 memory_monitor_summary.json
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas    330556 Jul 23 16:20 log.45697472._003975.job.log.tgz.1
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas      7777 Jul 23 16:21 heartbeat.json
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 16:21 boinc_mmap_file
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas        27 Jul 23 16:21 wrapper_checkpoint.txt
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas       823 Jul 23 16:21 pilotlog.txt
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas        95 Jul 23 16:21 pilot_heartbeat.json
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas    542910 Jul 23 16:21 log.45697472._003975.job.log.1
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas       357 Jul 23 16:21 output.list
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas       620 Jul 23 16:21 runtime_log
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas    890880 Jul 23 16:21 result.tar.gz
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas       651 Jul 23 16:21 ZoUMDmSFjy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8BLLDmVZYiOm.diag
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas      8655 Jul 23 16:21 runtime_log.err
[2025-07-23 16:21:38] -rw-r--r--. 1 boincer umatlas     22370 Jul 23 16:21 stderr.txt
[2025-07-23 16:21:38] HITS file was successfully produced:
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas 281821638 Jul 23 16:19 shared/HITS.pool.root.1
[2025-07-23 16:21:38]  *** Contents of shared directory: ***
[2025-07-23 16:21:38] total 605076
[2025-07-23 16:21:38] -rw-r--r--. 2 boincer umatlas 336308212 Jul 23 14:44 ATLAS.root_0
[2025-07-23 16:21:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 14:44 start_atlas.sh
[2025-07-23 16:21:38] -rw-r--r--. 2 boincer umatlas    542903 Jul 23 14:44 input.tar.gz
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas 281821638 Jul 23 16:19 HITS.pool.root.1
[2025-07-23 16:21:38] -rw-------. 1 boincer umatlas    890880 Jul 23 16:21 result.tar.gz
16:21:40 (3726917): run_atlas exited; CPU time 33167.749563
16:21:40 (3726917): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN