Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:44:16 (496433): wrapper (7.7.26015): starting
00:44:16 (496433): wrapper: running run_atlas (--nthreads 4)
[2025-07-25 00:44:16] Arguments: --nthreads 4
[2025-07-25 00:44:16] Threads: 4
[2025-07-25 00:44:16] Checking for CVMFS
[2025-07-25 00:44:16] No cvmfs_config command found, will try listing directly
[2025-07-25 00:44:16] CVMFS is ok
[2025-07-25 00:44:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 00:44:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 00:44:16] Further information can be found at the LHC@home message board.
[2025-07-25 00:44:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 00:44:16] Checking for apptainer binary...
[2025-07-25 00:44:16] which: no apptainer in ((null))
[2025-07-25 00:44:16] apptainer is not installed, using version from CVMFS
[2025-07-25 00:44:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 00:44:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-07-25 00:44:16] apptainer works
[2025-07-25 00:44:16] Set ATHENA_PROC_NUMBER=4
[2025-07-25 00:44:16] Set ATHENA_CORE_NUMBER=4
[2025-07-25 00:44:16] Starting ATLAS job with PandaID=6741919793
[2025-07-25 00:44:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:34:42 (1123785): wrapper (7.7.26015): starting
02:34:42 (1123785): wrapper: running run_atlas (--nthreads 4)
[2025-07-25 02:34:42] Arguments: --nthreads 4
[2025-07-25 02:34:42] Threads: 4
[2025-07-25 02:34:42] This job has been restarted, cleaning up previous attempt
[2025-07-25 02:34:43] Checking for CVMFS
[2025-07-25 02:34:43] No cvmfs_config command found, will try listing directly
[2025-07-25 02:34:43] CVMFS is ok
[2025-07-25 02:34:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 02:34:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 02:34:43] Further information can be found at the LHC@home message board.
[2025-07-25 02:34:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 02:34:43] Checking for apptainer binary...
[2025-07-25 02:34:43] which: no apptainer in ((null))
[2025-07-25 02:34:43] apptainer is not installed, using version from CVMFS
[2025-07-25 02:34:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 02:34:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-07-25 02:34:43] apptainer works
[2025-07-25 02:34:43] Set ATHENA_PROC_NUMBER=4
[2025-07-25 02:34:43] Set ATHENA_CORE_NUMBER=4
[2025-07-25 02:34:43] Starting ATLAS job with PandaID=6741919793
[2025-07-25 02:34:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 06:38:55]  *** The last 200 lines of the pilot log: ***
[2025-07-25 06:38:55] 2025-07-25 04:38:21,734 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 06:38:55] 2025-07-25 04:38:21,734 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 06:38:55] 2025-07-25 04:38:21,739 | INFO     | fitting pss+swap vs Time
[2025-07-25 06:38:55] 2025-07-25 04:38:21,739 | INFO     | sum of square deviations: 4233158440.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,741 | INFO     | sum of deviations: 24418059477.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,741 | INFO     | mean x: 1753410987.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,741 | INFO     | mean y: 2341887.6527196653
[2025-07-25 06:38:55] 2025-07-25 04:38:21,741 | INFO     | -- intersect: -10111830396.480183
[2025-07-25 06:38:55] 2025-07-25 04:38:21,741 | INFO     | intersect: -10111830396.480183
[2025-07-25 06:38:55] 2025-07-25 04:38:21,741 | INFO     | chi2: 2.5769061115478062
[2025-07-25 06:38:55] 2025-07-25 04:38:21,742 | INFO     | sum of square deviations: 3972995422.5
[2025-07-25 06:38:55] 2025-07-25 04:38:21,743 | INFO     | sum of deviations: 39059073998.50001
[2025-07-25 06:38:55] 2025-07-25 04:38:21,743 | INFO     | mean x: 1753410834.5
[2025-07-25 06:38:55] 2025-07-25 04:38:21,744 | INFO     | mean y: 2350316.6025641025
[2025-07-25 06:38:55] 2025-07-25 04:38:21,744 | INFO     | -- intersect: -17235676978.03048
[2025-07-25 06:38:55] 2025-07-25 04:38:21,744 | INFO     | intersect: -17235676978.03048
[2025-07-25 06:38:55] 2025-07-25 04:38:21,744 | INFO     | chi2: 1.7650147589286458
[2025-07-25 06:38:55] 2025-07-25 04:38:21,744 | INFO     | current chi2=1.7650147589286458 (change=31.506439019289758 %)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,744 | INFO     | sum of square deviations: 3723716330.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,746 | INFO     | sum of deviations: 38028580594.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,746 | INFO     | mean x: 1753410682.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,746 | INFO     | mean y: 2349686.091703057
[2025-07-25 06:38:55] 2025-07-25 04:38:21,746 | INFO     | -- intersect: -17904416975.37886
[2025-07-25 06:38:55] 2025-07-25 04:38:21,746 | INFO     | intersect: -17904416975.37886
[2025-07-25 06:38:55] 2025-07-25 04:38:21,747 | INFO     | chi2: 1.7659724593998443
[2025-07-25 06:38:55] 2025-07-25 04:38:21,747 | INFO     | current chi2=1.7659724593998443 (change=-0.05426019620254019 %)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,747 | INFO     | right removable region: 228
[2025-07-25 06:38:55] 2025-07-25 04:38:21,747 | INFO     | sum of square deviations: 3972995422.5
[2025-07-25 06:38:55] 2025-07-25 04:38:21,749 | INFO     | sum of deviations: -17916360355.5
[2025-07-25 06:38:55] 2025-07-25 04:38:21,749 | INFO     | mean x: 1753411139.5
[2025-07-25 06:38:55] 2025-07-25 04:38:21,749 | INFO     | mean y: 2366528.9017094015
[2025-07-25 06:38:55] 2025-07-25 04:38:21,749 | INFO     | -- intersect: 7909434744.666784
[2025-07-25 06:38:55] 2025-07-25 04:38:21,749 | INFO     | intersect: 7909434744.666784
[2025-07-25 06:38:55] 2025-07-25 04:38:21,749 | INFO     | chi2: 0.8489440363097573
[2025-07-25 06:38:55] 2025-07-25 04:38:21,750 | INFO     | current chi2=0.8489440363097573 (change=67.05568617710162 %)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,750 | INFO     | sum of square deviations: 3723716330.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,751 | INFO     | sum of deviations: -19534004929.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,751 | INFO     | mean x: 1753411292.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,752 | INFO     | mean y: 2367503.1790393014
[2025-07-25 06:38:55] 2025-07-25 04:38:21,752 | INFO     | -- intersect: 9200475464.45123
[2025-07-25 06:38:55] 2025-07-25 04:38:21,752 | INFO     | intersect: 9200475464.45123
[2025-07-25 06:38:55] 2025-07-25 04:38:21,752 | INFO     | chi2: 0.8420331119039263
[2025-07-25 06:38:55] 2025-07-25 04:38:21,752 | INFO     | current chi2=0.8420331119039263 (change=0.8140612467073698 %)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,752 | INFO     | left removable region: 20
[2025-07-25 06:38:55] 2025-07-25 04:38:21,753 | INFO     | sum of square deviations: 2790348132.0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,754 | INFO     | sum of deviations: -2947423315.000001
[2025-07-25 06:38:55] 2025-07-25 04:38:21,754 | INFO     | mean x: 1753411261.5
[2025-07-25 06:38:55] 2025-07-25 04:38:21,754 | INFO     | mean y: 2375544.894230769
[2025-07-25 06:38:55] 2025-07-25 04:38:21,755 | INFO     | -- intersect: 1854490402.4136164
[2025-07-25 06:38:55] 2025-07-25 04:38:21,755 | INFO     | intersect: 1854490402.4136164
[2025-07-25 06:38:55] 2025-07-25 04:38:21,755 | INFO     | chi2: 0.006706672154842156
[2025-07-25 06:38:55] 2025-07-25 04:38:21,755 | INFO     | -- intersect: 1854490402.4136164
[2025-07-25 06:38:55] 2025-07-25 04:38:21,755 | INFO     | current memory leak: -1.06 B/s (using 208 data points, chi2=0.01)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | could have reported an average CPU frequency of 2678 MHz (12 samples)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | ..............................
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | . Timing measurements:
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | . get job = 0 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | . initial setup = 1 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | . payload setup = 9 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | . stage-in = 0 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,756 | INFO     | . payload execution = 14563 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,757 | INFO     | . stage-out = 1 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,757 | INFO     | . log creation = 0 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,757 | INFO     | ..............................
[2025-07-25 06:38:55] 2025-07-25 04:38:21,856 | INFO     | 
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | job summary report
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | --------------------------------------------------
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | PanDA job id: 6741919793
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | task id: 45697472
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | errors: (none)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | pilot state: finished 
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | transexitcode: 0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | exeerrorcode: 0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,857 | INFO     | exeerrordiag: 
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | exitcode: 0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | exitmsg: OK
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | cpuconsumptiontime: 55632 s
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | nevents: 400
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | neventsw: 0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | pid: 1137980
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | pgrp: 1137980
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | corecount: 4
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | event service: False
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | sizes: {0: 2397554, 1: 2397582, 7: 2397844, 11: 2397872, 14576: 2429248, 14577: 2438268, 14580: 2438480, 14589: 2438674}
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | --------------------------------------------------
[2025-07-25 06:38:55] 2025-07-25 04:38:21,858 | INFO     | 
[2025-07-25 06:38:55] 2025-07-25 04:38:21,859 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-07-25 06:38:55] 2025-07-25 04:38:21,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,886 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,886 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | job 6741919793 has completed (purged errors)
[2025-07-25 06:38:55] 2025-07-25 04:38:21,888 | INFO     | overall cleanup function is called
[2025-07-25 06:38:55] 2025-07-25 04:38:22,898 | INFO     | --- collectZombieJob: --- 10, [1137980]
[2025-07-25 06:38:55] 2025-07-25 04:38:22,898 | INFO     | zombie collector waiting for pid 1137980
[2025-07-25 06:38:55] 2025-07-25 04:38:22,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 06:38:55] 2025-07-25 04:38:22,898 | INFO     | collected zombie processes
[2025-07-25 06:38:55] 2025-07-25 04:38:22,898 | INFO     | will attempt to kill all subprocesses of pid=1137980
[2025-07-25 06:38:55] 2025-07-25 04:38:23,603 | INFO     | process IDs to be killed: [1137980] (in reverse order)
[2025-07-25 06:38:55] 2025-07-25 04:38:23,872 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 06:38:55] 2025-07-25 04:38:23,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 06:38:55] 2025-07-25 04:38:23,897 | INFO     | did not find any defunct processes belonging to 1137980
[2025-07-25 06:38:55] 2025-07-25 04:38:23,917 | INFO     | did not find any defunct processes belonging to 1137980
[2025-07-25 06:38:55] 2025-07-25 04:38:23,917 | INFO     | ready for new job
[2025-07-25 06:38:55] 2025-07-25 04:38:23,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 06:38:55] 2025-07-25 04:38:23,920 | INFO     | ***************************************
[2025-07-25 06:38:55] 2025-07-25 04:38:23,920 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 06:38:55] 2025-07-25 04:38:23,920 | INFO     | ***************************************
[2025-07-25 06:38:55] 2025-07-25 04:38:23,920 | INFO     | 
[2025-07-25 06:38:55] 2025-07-25 04:38:23,928 | INFO     | architecture information:
[2025-07-25 06:38:55] 2025-07-25 04:38:23,929 | INFO     | executing command: cat /etc/os-release
[2025-07-25 06:38:55] 2025-07-25 04:38:23,954 | INFO     | cat /etc/os-release:
[2025-07-25 06:38:55] NAME="CentOS Linux"
[2025-07-25 06:38:55] VERSION="7 (Core)"
[2025-07-25 06:38:55] ID="centos"
[2025-07-25 06:38:55] ID_LIKE="rhel fedora"
[2025-07-25 06:38:55] VERSION_ID="7"
[2025-07-25 06:38:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 06:38:55] ANSI_COLOR="0;31"
[2025-07-25 06:38:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 06:38:55] HOME_URL="https://www.centos.org/"
[2025-07-25 06:38:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 06:38:55] 
[2025-07-25 06:38:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 06:38:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 06:38:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 06:38:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 06:38:55] 
[2025-07-25 06:38:55] 2025-07-25 04:38:23,954 | INFO     | ***************************************
[2025-07-25 06:38:55] 2025-07-25 04:38:24,459 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-07-25 06:38:55] 2025-07-25 04:38:24,485 | INFO     | sufficient remaining disk space (3272570044416 B)
[2025-07-25 06:38:55] 2025-07-25 04:38:24,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 06:38:55] 2025-07-25 04:38:24,486 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 06:38:55] 2025-07-25 04:38:24,486 | INFO     | update_server=False
[2025-07-25 06:38:55] 2025-07-25 04:38:24,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 06:38:55] 2025-07-25 04:38:24,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 06:38:55] 2025-07-25 04:38:24,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 06:38:55] 2025-07-25 04:38:24,664 | INFO     | aborting loop
[2025-07-25 06:38:55] 2025-07-25 04:38:24,739 | INFO     | all job control threads have been joined
[2025-07-25 06:38:55] 2025-07-25 04:38:25,200 | INFO     | all payload control threads have been joined
[2025-07-25 06:38:55] 2025-07-25 04:38:25,260 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 06:38:55] 2025-07-25 04:38:25,482 | INFO     | all data control threads have been joined
[2025-07-25 06:38:55] 2025-07-25 04:38:25,492 | INFO     | [job] retrieve thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:25,610 | INFO     | [payload] validate_post thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:25,669 | INFO     | [job] job monitor thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:25,744 | INFO     | [job] control thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:25,993 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,121 | INFO     | [job] validate thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,207 | INFO     | [payload] control thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,270 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,436 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,489 | INFO     | [data] control thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,509 | INFO     | [data] copytool_in thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,741 | INFO     | [payload] failed_post thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:26,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 06:38:55] 2025-07-25 04:38:27,267 | INFO     | [data] copytool_out thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:27,875 | INFO     | [job] queue monitor thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:28,494 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:35,527 | INFO     | job.realtimelogging is not enabled
[2025-07-25 06:38:55] 2025-07-25 04:38:36,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 06:38:55] 2025-07-25 04:38:37,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22684362348352)>', '<ExcThread(monitor, started 22684058490624)>']
[2025-07-25 06:38:55] 2025-07-25 04:38:42,637 | INFO     | all workflow threads have been joined
[2025-07-25 06:38:55] 2025-07-25 04:38:42,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 06:38:55] 2025-07-25 04:38:42,637 | INFO     | traces error code: 0
[2025-07-25 06:38:55] 2025-07-25 04:38:42,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 06:38:55] 2025-07-25 04:38:55,090 | INFO     | PID=1130057 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 06:38:55] 2025-07-25 04:38:55,093 | INFO     | .. there are 26 such processes running
[2025-07-25 06:38:55] 2025-07-25 04:38:55,093 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 06:38:55] 2025-07-25 04:38:55,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 06:38:55] 2025-07-25 04:38:55,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 06:38:55] 2025-07-25 04:38:55,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 06:38:55] 2025-07-25 04:38:55,093 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 06:38:55] 2025-07-25 04:38:55,094 | INFO     | [monitor] control thread has ended
[2025-07-25 06:38:55] 2025-07-25 04:38:55,231 [wrapper] ==== pilot stdout END ====
[2025-07-25 06:38:55] 2025-07-25 04:38:55,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 06:38:55] 2025-07-25 04:38:55,238 [wrapper] pilotpid: 1130057
[2025-07-25 06:38:55] 2025-07-25 04:38:55,242 [wrapper] Pilot exit status: 0
[2025-07-25 06:38:55] 2025-07-25 04:38:55,258 [wrapper] pandaids: 6741919793 6741919793
[2025-07-25 06:38:55] 2025-07-25 04:38:55,400 [wrapper] cleanup supervisor_pilot 2383803 1130058
[2025-07-25 06:38:55] 2025-07-25 04:38:55,404 [wrapper] Test setup, not cleaning
[2025-07-25 06:38:55] 2025-07-25 04:38:55,408 [wrapper] apfmon messages muted
[2025-07-25 06:38:55] 2025-07-25 04:38:55,411 [wrapper] ==== wrapper stdout END ====
[2025-07-25 06:38:55] 2025-07-25 04:38:55,414 [wrapper] ==== wrapper stderr END ====
[2025-07-25 06:38:55]  *** Error codes and diagnostics ***
[2025-07-25 06:38:55]     "exeErrorCode": 0,
[2025-07-25 06:38:55]     "exeErrorDiag": "",
[2025-07-25 06:38:55]     "pilotErrorCode": 0,
[2025-07-25 06:38:55]     "pilotErrorDiag": "",
[2025-07-25 06:38:55]  *** Listing of results directory ***
[2025-07-25 06:38:55] total 931644
[2025-07-25 06:38:55] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc    530466 Jul 23 12:42 pilot3.tar.gz
[2025-07-25 06:38:55] -rwx------ 1 boinc boinc     36292 Jul 23 13:02 runpilot2-wrapper.sh
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc      5112 Jul 23 13:02 queuedata.json
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc       100 Jul 25 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 06:38:55] -rwxr-xr-x 1 boinc boinc      7986 Jul 25 00:44 run_atlas
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc       105 Jul 25 00:44 job.xml
[2025-07-25 06:38:55] -rw-r--r-- 3 boinc boinc 329110422 Jul 25 00:44 EVNT.45697470._000079.pool.root.1
[2025-07-25 06:38:55] -rw-r--r-- 3 boinc boinc 329110422 Jul 25 00:44 ATLAS.root_0
[2025-07-25 06:38:55] drwxrwx--x 2 boinc boinc      4096 Jul 25 00:44 shared
[2025-07-25 06:38:55] -rw-r--r-- 2 boinc boinc    542903 Jul 25 00:44 input.tar.gz
[2025-07-25 06:38:55] -rw-r--r-- 2 boinc boinc     15095 Jul 25 00:44 start_atlas.sh
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc         0 Jul 25 00:44 boinc_lockfile
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc      6693 Jul 25 02:34 init_data.xml
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc      2611 Jul 25 02:34 pandaJob.out
[2025-07-25 06:38:55] -rw------- 1 boinc boinc    979709 Jul 25 02:34 agis_schedconf.cvmfs.json
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc       532 Jul 25 06:37 boinc_task_state.xml
[2025-07-25 06:38:55] -rw------- 1 boinc boinc 288478738 Jul 25 06:37 HITS.45697472._005399.pool.root.1
[2025-07-25 06:38:55] -rw------- 1 boinc boinc        97 Jul 25 06:37 pilot_heartbeat.json
[2025-07-25 06:38:55] -rw------- 1 boinc boinc      1032 Jul 25 06:38 memory_monitor_summary.json
[2025-07-25 06:38:55] -rw------- 1 boinc boinc   1593052 Jul 25 06:38 agis_ddmendpoints.agis.ALL.json
[2025-07-25 06:38:55] -rw------- 1 boinc boinc    355991 Jul 25 06:38 log.45697472._005399.job.log.tgz.1
[2025-07-25 06:38:55] -rw------- 1 boinc boinc      7797 Jul 25 06:38 heartbeat.json
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc      8192 Jul 25 06:38 boinc_mmap_file
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc        28 Jul 25 06:38 wrapper_checkpoint.txt
[2025-07-25 06:38:55] -rw------- 1 boinc boinc       893 Jul 25 06:38 pilotlog.txt
[2025-07-25 06:38:55] -rw------- 1 boinc boinc   1350871 Jul 25 06:38 log.45697472._005399.job.log.1
[2025-07-25 06:38:55] -rw------- 1 boinc boinc       357 Jul 25 06:38 output.list
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc       620 Jul 25 06:38 runtime_log
[2025-07-25 06:38:55] -rw------- 1 boinc boinc   1730560 Jul 25 06:38 result.tar.gz
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc      9104 Jul 25 06:38 runtime_log.err
[2025-07-25 06:38:55] -rw------- 1 boinc boinc       792 Jul 25 06:38 Wy1NDmKQmy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJ9vKDmRRuwrn.diag
[2025-07-25 06:38:55] -rw-r--r-- 1 boinc boinc     22583 Jul 25 06:38 stderr.txt
[2025-07-25 06:38:55] HITS file was successfully produced:
[2025-07-25 06:38:55] -rw------- 1 boinc boinc 288478738 Jul 25 06:37 shared/HITS.pool.root.1
[2025-07-25 06:38:55]  *** Contents of shared directory: ***
[2025-07-25 06:38:55] total 605368
[2025-07-25 06:38:55] -rw-r--r-- 3 boinc boinc 329110422 Jul 25 00:44 ATLAS.root_0
[2025-07-25 06:38:55] -rw-r--r-- 2 boinc boinc    542903 Jul 25 00:44 input.tar.gz
[2025-07-25 06:38:55] -rw-r--r-- 2 boinc boinc     15095 Jul 25 00:44 start_atlas.sh
[2025-07-25 06:38:55] -rw------- 1 boinc boinc 288478738 Jul 25 06:37 HITS.pool.root.1
[2025-07-25 06:38:55] -rw------- 1 boinc boinc   1730560 Jul 25 06:38 result.tar.gz
06:38:56 (1123785): run_atlas exited; CPU time 56455.126311
06:38:56 (1123785): called boinc_finish(0)

</stderr_txt>
]]>

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