Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-23 20:13:37 (19112): Detected: vboxwrapper 26206
2025-07-23 20:13:37 (19112): Detected: BOINC client v8.0.2
2025-07-23 20:13:37 (19112): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-07-23 20:13:37 (19112): Successfully copied 'init_data.xml' to the shared directory.
2025-07-23 20:13:38 (19112): Create VM. (boinc_6251de1b680595f1, slot#0)
2025-07-23 20:13:38 (19112): Setting Memory Size for VM. (4800MB)
2025-07-23 20:13:39 (19112): Setting CPU Count for VM. (8)
2025-07-23 20:13:39 (19112): Setting Chipset Options for VM.
2025-07-23 20:13:39 (19112): Setting Graphics Controller Options for VM.
2025-07-23 20:13:39 (19112): Setting Boot Options for VM.
2025-07-23 20:13:40 (19112): Setting Network Configuration for NAT.
2025-07-23 20:13:40 (19112): Enabling VM Network Access.
2025-07-23 20:13:40 (19112): Disabling USB Support for VM.
2025-07-23 20:13:40 (19112): Disabling COM Port Support for VM.
2025-07-23 20:13:41 (19112): Disabling LPT Port Support for VM.
2025-07-23 20:13:41 (19112): Disabling Audio Support for VM.
2025-07-23 20:13:41 (19112): Disabling Clipboard Support for VM.
2025-07-23 20:13:41 (19112): Disabling Drag and Drop Support for VM.
2025-07-23 20:13:42 (19112): Adding storage controller(s) to VM.
2025-07-23 20:13:42 (19112): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-23 20:13:45 (19112): Adding VirtualBox Guest Additions to VM.
2025-07-23 20:13:45 (19112): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-23 20:13:45 (19112): forwarding host port 63599 to guest port 80
2025-07-23 20:13:45 (19112): Enabling remote desktop for VM.
2025-07-23 20:13:46 (19112): Enabling shared directory for VM.
2025-07-23 20:13:47 (19112): Starting VM using VBoxManage interface. (boinc_6251de1b680595f1, slot#0)
2025-07-23 20:13:52 (19112): Successfully started VM. (PID = '21700')
2025-07-23 20:13:52 (19112): Reporting VM Process ID to BOINC.
2025-07-23 20:13:52 (19112): Guest Log: BIOS: VirtualBox 7.1.6
2025-07-23 20:13:52 (19112): Guest Log: CPUID EDX: 0x178bfbff
2025-07-23 20:13:52 (19112): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-23 20:13:52 (19112): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-23 20:13:52 (19112): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-23 20:13:52 (19112): Detected: Web Application Enabled (http://localhost:63599)
2025-07-23 20:13:52 (19112): Detected: Remote Desktop Enabled (localhost:63600)
2025-07-23 20:13:52 (19112): Preference change detected
2025-07-23 20:13:52 (19112): Setting CPU throttle for VM. (100%)
2025-07-23 20:13:52 (19112): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-23 20:13:54 (19112): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-23 20:13:54 (19112): Guest Log: BIOS: Booting from Hard Disk...
2025-07-23 20:13:57 (19112): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-23 20:13:57 (19112): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-23 20:13:57 (19112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-23 20:14:02 (19112): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-23 20:14:02 (19112): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-23 20:14:07 (19112): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000158 main     Log opened 2025-07-23T20:14:06.114636000Z
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000258 main     OS Product: Linux
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000288 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000313 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000337 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000338 main     Process ID: 1373
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.000338 main     Package type: LINUX_64BITS_GENERIC
2025-07-23 20:14:07 (19112): Guest Log: 00:00:00.002066 main     5.2.32 r132073 started. Verbose level = 0
2025-07-23 20:14:07 (19112): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-23 20:14:07 (19112): Guest Log: [INFO] Mounting shared directory
2025-07-23 20:14:08 (19112): Guest Log: [INFO] Checking for init_data.xml
2025-07-23 20:14:17 (19112): Guest Log: 00:00:10.004387 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 821 906 000ns (GuestNow=1 753 294 457 296 461 000 ns GuestLast=1 753 301 646 118 367 000 ns fSetTimeLastLoop=true )
2025-07-23 20:16:13 (19112): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-23 20:16:13 (19112): Guest Log: [INFO] Detected branch: prod
2025-07-23 20:16:13 (19112): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-23 20:16:13 (19112): Guest Log: Copying input files
2025-07-23 20:16:15 (19112): Guest Log: Copied input files into RunAtlas.
2025-07-23 20:16:15 (19112): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-23 20:16:15 (19112): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-23 20:16:15 (19112): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-23 20:16:15 (19112): Guest Log: Further information can be found at the LHC@home message board.
2025-07-23 20:18:50 (19112): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-23 20:18:50 (19112): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-23 20:18:50 (19112): Guest Log: 2.6.3.0 1692 3 32388 148668 3 1 3120517 4096000 0 65024 0 0 n/a 1292 23 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-23 20:18:51 (19112): Guest Log: copied the webapp to /var/www
2025-07-23 20:18:51 (19112): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-23 20:18:51 (19112): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-23 20:18:51 (19112): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-23 20:18:51 (19112): Guest Log:  *** Starting ATLAS job. (PandaID=6743009530 taskID=45697541) ***
2025-07-23 20:32:08 (19112): Guest Log:  *** Job finished ***
2025-07-23 20:32:08 (19112): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:31:48,383 | INFO     | end of generic workflow (traces error code: 0)
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:31:48,383 | INFO     | traces error code: 0
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:31:48,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,315 | INFO     | PID=6151 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,316 | INFO     | found 0 job(s) in 20 queues
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,316 | CRITICAL | thread 'MainThread' is not alive
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,316 | INFO     | [monitor] control thread has ended
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,388 [wrapper] ==== pilot stdout END ====
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,393 [wrapper] ==== wrapper stdout RESUME ====
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,398 [wrapper] pilotpid: 6151
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,402 [wrapper] Pilot exit status: 0
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,446 [wrapper] pandaids: 6743009530
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,476 [wrapper] cleanup supervisor_pilot  6157 6152
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,482 [wrapper] Test setup, not cleaning
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,487 [wrapper] apfmon messages muted
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,492 [wrapper] ==== wrapper stdout END ====
2025-07-23 20:32:08 (19112): Guest Log: 2025-07-23 18:32:07,497 [wrapper] ==== wrapper stderr END ====
2025-07-23 20:32:08 (19112): Guest Log:  *** Error codes and diagnostics ***
2025-07-23 20:32:08 (19112): Guest Log:     "exeErrorCode": 65,
2025-07-23 20:32:08 (19112): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-07-23 20:32:08 (19112): Guest Log:     "pilotErrorCode": 1305,
2025-07-23 20:32:08 (19112): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-07-23 20:32:08 (19112): Guest Log:  *** Listing of results directory ***
2025-07-23 20:32:08 (19112): Guest Log: total 3920
2025-07-23 20:32:08 (19112): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 23 04:19 pilot3.tar.gz
2025-07-23 20:32:08 (19112): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 23 04:20 queuedata.json
2025-07-23 20:32:08 (19112): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 23 04:25 runpilot2-wrapper.sh
2025-07-23 20:32:08 (19112): Guest Log: -rwxr-xr-x. 1 atlas atlas    9128 Jul 23 18:16 init_data.xml
2025-07-23 20:32:08 (19112): Guest Log: -rwxr-xr-x. 1 atlas atlas  542898 Jul 23 18:16 input.tar.gz
2025-07-23 20:32:08 (19112): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 23 18:16 start_atlas.sh
2025-07-23 20:32:08 (19112): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 23 18:16 EVNT.45697539._000190.pool.root.1 -> /data/./ATLAS.root_0
2025-07-23 20:32:08 (19112): Guest Log: -rw-r--r--. 1 atlas atlas    2593 Jul 23 18:18 pandaJob.out
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas  978487 Jul 23 18:26 agis_schedconf.cvmfs.json
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas 1593041 Jul 23 18:26 agis_ddmendpoints.agis.ALL.json
2025-07-23 20:32:08 (19112): Guest Log: drwx------. 4 atlas atlas    4096 Jul 23 18:26 pilot3
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas    1009 Jul 23 18:29 memory_monitor_summary.json
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas   21736 Jul 23 18:29 log.45697541._005601.job.log.tgz.1
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas    8425 Jul 23 18:31 heartbeat.json
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas      95 Jul 23 18:32 pilot_heartbeat.json
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas     814 Jul 23 18:32 pilotlog.txt
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas   85965 Jul 23 18:32 log.45697541._005601.job.log.1
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas     188 Jul 23 18:32 output.list
2025-07-23 20:32:08 (19112): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 23 18:32 runtime_log
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas  122880 Jul 23 18:32 result.tar.gz
2025-07-23 20:32:08 (19112): Guest Log: -rw-------. 1 atlas atlas     655 Jul 23 18:32 zPoKDmEEgy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjsKLDm855KHo.diag
2025-07-23 20:32:08 (19112): Guest Log: -rw-r--r--. 1 atlas atlas    8475 Jul 23 18:32 runtime_log.err
2025-07-23 20:32:08 (19112): Guest Log: Looking for outputfile HITS.45697541._005601.pool.root.1
2025-07-23 20:32:08 (19112): Guest Log: No HITS file was produced
2025-07-23 20:32:08 (19112): Guest Log: Successfully finished the ATLAS job!
2025-07-23 20:32:08 (19112): Guest Log: Copying the results back to the shared directory!
2025-07-23 20:32:08 (19112): Guest Log:  *** Contents of shared directory: ***
2025-07-23 20:32:08 (19112): Guest Log: total 334892
2025-07-23 20:32:08 (19112): Guest Log: -rwxrwxrwx. 1 root root 342230743 Jul 23 18:13 ATLAS.root_0
2025-07-23 20:32:08 (19112): Guest Log: -rwxrwxrwx. 1 root root      9128 Jul 23 18:13 init_data.xml
2025-07-23 20:32:08 (19112): Guest Log: -rwxrwxrwx. 1 root root    542898 Jul 23 15:57 input.tar.gz
2025-07-23 20:32:08 (19112): Guest Log: -rwxrwxrwx. 1 root root    122880 Jul 23 18:32 result.tar.gz
2025-07-23 20:32:08 (19112): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 15:57 start_atlas.sh
2025-07-23 20:32:08 (19112): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-23 20:32:09 (19112): VM Completion File Detected.
2025-07-23 20:32:09 (19112): Powering off VM.
2025-07-23 20:32:09 (19112): Successfully stopped VM.
2025-07-23 20:32:09 (19112): Deregistering VM. (boinc_6251de1b680595f1, slot#0)
2025-07-23 20:32:09 (19112): Removing network bandwidth throttle group from VM.
2025-07-23 20:32:10 (19112): Removing VM from VirtualBox.
20:32:15 (19112): called boinc_finish(0)

</stderr_txt>
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