Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:55:10 (3182192): wrapper (7.7.26015): starting
11:55:10 (3182192): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 11:55:10] Arguments: --nthreads 8
[2025-07-23 11:55:10] Threads: 8
[2025-07-23 11:55:10] Checking for CVMFS
[2025-07-23 11:55:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 11:55:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 11:55:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 11:55:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 11:55:11] 2.13.0.0 3822049 12812 152056 148664 3 785 34451236 40960000 43008 16776704 1 129809019 99.624 128328502 8990 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-23 11:55:11] CVMFS is ok
[2025-07-23 11:55:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 11:55:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 11:55:11] Further information can be found at the LHC@home message board.
[2025-07-23 11:55:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 11:55:11] Checking for apptainer binary...
[2025-07-23 11:55:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 11:55:11] Running /usr/bin/apptainer --version
[2025-07-23 11:55:11] apptainer version 1.4.1-1.el9
[2025-07-23 11:55:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 11:55:12] c8-6-10.aglt2.org
[2025-07-23 11:55:12] apptainer works
[2025-07-23 11:55:12] Set ATHENA_PROC_NUMBER=8
[2025-07-23 11:55:12] Set ATHENA_CORE_NUMBER=8
[2025-07-23 11:55:12] Starting ATLAS job with PandaID=6741883534
[2025-07-23 11:55:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 13:22:11]  *** The last 200 lines of the pilot log: ***
[2025-07-23 13:22:11]  workdir=None
[2025-07-23 13:22:11] ]
[2025-07-23 13:22:11] 2025-07-23 17:21:16,628 | INFO     | transferring file log.45697472._003967.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6741883534/log.45697472._003967.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 13:22:11] 2025-07-23 17:21:16,628 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6741883534/log.45697472._003967.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697472._003967.job
[2025-07-23 13:22:11] 2025-07-23 17:21:16,694 | INFO     | adding to output.list: log.45697472._003967.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/49/log.45697472._003967.job.log.tg
[2025-07-23 13:22:11] 2025-07-23 17:21:16,695 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 13:22:11] 2025-07-23 17:21:16,695 | INFO     | summary of transferred files:
[2025-07-23 13:22:11] 2025-07-23 17:21:16,695 | INFO     |  -- lfn=log.45697472._003967.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 13:22:11] 2025-07-23 17:21:16,695 | INFO     | stage-out finished correctly
[2025-07-23 13:22:11] 2025-07-23 17:21:17,422 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 13:22:11] 2025-07-23 17:21:18,364 | INFO     | monitor loop #348: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:18,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:18,918 | INFO     | PID=3186812 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-23 13:22:11] 2025-07-23 17:21:18,918 | INFO     | .. there are 41 such processes running
[2025-07-23 13:22:11] 2025-07-23 17:21:19,837 | INFO     | job 6741883534 has state=finished
[2025-07-23 13:22:11] 2025-07-23 17:21:19,838 | INFO     | preparing for final server update for job 6741883534 in state='finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:19,838 | INFO     | this job has now completed (state=finished)
[2025-07-23 13:22:11] 2025-07-23 17:21:19,838 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 13:22:11] 2025-07-23 17:21:19,838 | INFO     | log transfer has been attempted: DONE
[2025-07-23 13:22:11] 2025-07-23 17:21:19,838 | INFO     | job 6741883534 has finished - writing final server update
[2025-07-23 13:22:11] 2025-07-23 17:21:19,839 | INFO     | total number of processed events: 400 (read)
[2025-07-23 13:22:11] 2025-07-23 17:21:19,851 | INFO     | executing command: lscpu
[2025-07-23 13:22:11] 2025-07-23 17:21:19,940 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 13:22:11] 2025-07-23 17:21:20,869 | INFO     | monitor loop #349: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:20,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:23,374 | INFO     | monitor loop #350: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:23,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:25,879 | INFO     | monitor loop #351: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:25,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:28,384 | INFO     | monitor loop #352: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:28,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:30,889 | INFO     | monitor loop #353: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:30,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:33,401 | INFO     | monitor loop #354: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:33,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:35,905 | INFO     | monitor loop #355: job 0:6741883534 is in state 'finished'
[2025-07-23 13:22:11] 2025-07-23 17:21:35,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,174 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 13:22:11] 2025-07-23 17:21:36,182 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3791.3812734375047
[2025-07-23 13:22:11] 2025-07-23 17:21:36,201 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741883534/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,201 | INFO     | extracted standard info from prmon json
[2025-07-23 13:22:11] 2025-07-23 17:21:36,201 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 13:22:11] 2025-07-23 17:21:36,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 13:22:11] 2025-07-23 17:21:36,202 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 13:22:11] 2025-07-23 17:21:36,202 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 13:22:11] 2025-07-23 17:21:36,203 | INFO     | fitting pss+swap vs Time
[2025-07-23 13:22:11] 2025-07-23 17:21:36,203 | INFO     | sum of square deviations: 141539398.0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,203 | INFO     | sum of deviations: -1299164030.999999
[2025-07-23 13:22:11] 2025-07-23 17:21:36,203 | INFO     | mean x: 1753288774.0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | mean y: 2428723.1688311687
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | -- intersect: 16095543031.432924
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | intersect: 16095543031.432924
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | chi2: 0.007623796878210981
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | -- intersect: 16095543031.432924
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | current memory leak: -9.18 B/s (using 77 data points, chi2=0.01)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | could have reported an average CPU frequency of 3786 MHz (6 samples)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | ..............................
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . Timing measurements:
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . get job = 0 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . initial setup = 2 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . payload setup = 6 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . stage-in = 0 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . payload execution = 5125 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . stage-out = 1 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,204 | INFO     | . log creation = 0 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,205 | INFO     | ..............................
[2025-07-23 13:22:11] 2025-07-23 17:21:36,279 | INFO     | 
[2025-07-23 13:22:11] 2025-07-23 17:21:36,279 | INFO     | job summary report
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | --------------------------------------------------
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | PanDA job id: 6741883534
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | task id: 45697472
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | errors: (none)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | pilot state: finished 
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | transexitcode: 0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | exeerrorcode: 0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | exeerrordiag: 
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | exitcode: 0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | exitmsg: OK
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | cpuconsumptiontime: 33330 s
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | nevents: 400
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | neventsw: 0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | pid: 3193788
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | pgrp: 3193788
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | corecount: 8
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | event service: False
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | sizes: {0: 2397483, 5: 2397745, 11: 2397801, 5136: 2424461, 5138: 2433459, 5139: 2433515, 5157: 2433837}
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | --------------------------------------------------
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | 
[2025-07-23 13:22:11] 2025-07-23 17:21:36,280 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-23 13:22:11] 2025-07-23 17:21:36,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,308 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,308 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,308 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | job 6741883534 has completed (purged errors)
[2025-07-23 13:22:11] 2025-07-23 17:21:36,309 | INFO     | overall cleanup function is called
[2025-07-23 13:22:11] 2025-07-23 17:21:37,318 | INFO     | --- collectZombieJob: --- 10, [3193788]
[2025-07-23 13:22:11] 2025-07-23 17:21:37,318 | INFO     | zombie collector waiting for pid 3193788
[2025-07-23 13:22:11] 2025-07-23 17:21:37,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 13:22:11] 2025-07-23 17:21:37,318 | INFO     | collected zombie processes
[2025-07-23 13:22:11] 2025-07-23 17:21:37,318 | INFO     | will attempt to kill all subprocesses of pid=3193788
[2025-07-23 13:22:11] 2025-07-23 17:21:38,328 | INFO     | process IDs to be killed: [3193788] (in reverse order)
[2025-07-23 13:22:11] 2025-07-23 17:21:38,580 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 13:22:11] 2025-07-23 17:21:38,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 13:22:11] 2025-07-23 17:21:38,618 | INFO     | did not find any defunct processes belonging to 3193788
[2025-07-23 13:22:11] 2025-07-23 17:21:38,643 | INFO     | did not find any defunct processes belonging to 3193788
[2025-07-23 13:22:11] 2025-07-23 17:21:38,643 | INFO     | ready for new job
[2025-07-23 13:22:11] 2025-07-23 17:21:38,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 13:22:11] 2025-07-23 17:21:38,644 | INFO     | ***************************************
[2025-07-23 13:22:11] 2025-07-23 17:21:38,645 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 13:22:11] 2025-07-23 17:21:38,645 | INFO     | ***************************************
[2025-07-23 13:22:11] 2025-07-23 17:21:38,645 | INFO     | 
[2025-07-23 13:22:11] 2025-07-23 17:21:38,669 | INFO     | architecture information:
[2025-07-23 13:22:11] 2025-07-23 17:21:38,670 | INFO     | executing command: cat /etc/os-release
[2025-07-23 13:22:11] 2025-07-23 17:21:38,715 | INFO     | cat /etc/os-release:
[2025-07-23 13:22:11] NAME="CentOS Linux"
[2025-07-23 13:22:11] VERSION="7 (Core)"
[2025-07-23 13:22:11] ID="centos"
[2025-07-23 13:22:11] ID_LIKE="rhel fedora"
[2025-07-23 13:22:11] VERSION_ID="7"
[2025-07-23 13:22:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 13:22:11] ANSI_COLOR="0;31"
[2025-07-23 13:22:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 13:22:11] HOME_URL="https://www.centos.org/"
[2025-07-23 13:22:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 13:22:11] 
[2025-07-23 13:22:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 13:22:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 13:22:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 13:22:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 13:22:11] 
[2025-07-23 13:22:11] 2025-07-23 17:21:38,716 | INFO     | ***************************************
[2025-07-23 13:22:11] 2025-07-23 17:21:39,219 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-23 13:22:11] 2025-07-23 17:21:39,391 | INFO     | sufficient remaining disk space (170770038784 B)
[2025-07-23 13:22:11] 2025-07-23 17:21:39,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 13:22:11] 2025-07-23 17:21:39,392 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 13:22:11] 2025-07-23 17:21:39,392 | INFO     | update_server=False
[2025-07-23 13:22:11] 2025-07-23 17:21:39,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 13:22:11] 2025-07-23 17:21:39,416 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 13:22:11] 2025-07-23 17:21:39,416 | INFO     | aborting loop
[2025-07-23 13:22:11] 2025-07-23 17:21:39,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 13:22:11] 2025-07-23 17:21:40,216 | INFO     | all data control threads have been joined
[2025-07-23 13:22:11] 2025-07-23 17:21:40,257 | INFO     | all payload control threads have been joined
[2025-07-23 13:22:11] 2025-07-23 17:21:40,398 | INFO     | [job] retrieve thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:40,421 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:40,422 | INFO     | [job] job monitor thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:40,495 | INFO     | [job] validate thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:40,798 | INFO     | all job control threads have been joined
[2025-07-23 13:22:11] 2025-07-23 17:21:40,944 | INFO     | [data] copytool_in thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:40,947 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,222 | INFO     | [data] control thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,263 | INFO     | [payload] control thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 13:22:11] 2025-07-23 17:21:41,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 13:22:11] 2025-07-23 17:21:41,536 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,632 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,785 | INFO     | [payload] validate_post thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,806 | INFO     | [job] control thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,824 | INFO     | [data] copytool_out thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:41,988 | INFO     | [payload] failed_post thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:42,320 | INFO     | [job] queue monitor thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:45,534 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 13:22:11] 2025-07-23 17:21:45,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408808859456)>', '<ExcThread(monitor, started 140408176764672)>']
[2025-07-23 13:22:11] 2025-07-23 17:21:50,781 | INFO     | all workflow threads have been joined
[2025-07-23 13:22:11] 2025-07-23 17:21:50,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 13:22:11] 2025-07-23 17:21:50,783 | INFO     | traces error code: 0
[2025-07-23 13:22:11] 2025-07-23 17:21:50,783 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 13:22:11] 2025-07-23 17:22:10,296 | INFO     | PID=3186812 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 13:22:11] 2025-07-23 17:22:10,297 | INFO     | .. there are 40 such processes running
[2025-07-23 13:22:11] 2025-07-23 17:22:10,297 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 13:22:11] 2025-07-23 17:22:10,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 13:22:11] 2025-07-23 17:22:10,297 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 13:22:11] 2025-07-23 17:22:10,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 13:22:11] 2025-07-23 17:22:10,298 | INFO     | [monitor] control thread has ended
[2025-07-23 13:22:11] 2025-07-23 17:22:10,472 [wrapper] ==== pilot stdout END ====
[2025-07-23 13:22:11] 2025-07-23 17:22:10,478 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 13:22:11] 2025-07-23 17:22:10,498 [wrapper] pilotpid: 3186812
[2025-07-23 13:22:11] 2025-07-23 17:22:10,536 [wrapper] Pilot exit status: 0
[2025-07-23 13:22:11] 2025-07-23 17:22:10,604 [wrapper] pandaids: 6741883534
[2025-07-23 13:22:11] 2025-07-23 17:22:10,854 [wrapper] cleanup supervisor_pilot 4032856 3186813
[2025-07-23 13:22:11] 2025-07-23 17:22:10,877 [wrapper] Test setup, not cleaning
[2025-07-23 13:22:11] 2025-07-23 17:22:10,884 [wrapper] apfmon messages muted
[2025-07-23 13:22:11] 2025-07-23 17:22:10,898 [wrapper] ==== wrapper stdout END ====
[2025-07-23 13:22:11] 2025-07-23 17:22:10,901 [wrapper] ==== wrapper stderr END ====
[2025-07-23 13:22:11]  *** Error codes and diagnostics ***
[2025-07-23 13:22:11]     "exeErrorCode": 0,
[2025-07-23 13:22:11]     "exeErrorDiag": "",
[2025-07-23 13:22:11]     "pilotErrorCode": 0,
[2025-07-23 13:22:11]     "pilotErrorDiag": "",
[2025-07-23 13:22:11]  *** Listing of results directory ***
[2025-07-23 13:22:11] total 606464
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 03:36 queuedata.json
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 03:38 pilot3.tar.gz
[2025-07-23 13:22:11] -rwx------. 1 boincer umatlas     36292 Jul 23 03:38 runpilot2-wrapper.sh
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas       100 Jul 23 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 13:22:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 11:55 run_atlas
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas       105 Jul 23 11:55 job.xml
[2025-07-23 13:22:11] -rw-r--r--. 2 boincer umatlas 336308212 Jul 23 11:55 EVNT.45697470._000182.pool.root.1
[2025-07-23 13:22:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 11:55 start_atlas.sh
[2025-07-23 13:22:11] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 11:55 shared
[2025-07-23 13:22:11] -rw-r--r--. 2 boincer umatlas    542902 Jul 23 11:55 input.tar.gz
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas         0 Jul 23 11:55 boinc_lockfile
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas      2611 Jul 23 11:55 pandaJob.out
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas    978487 Jul 23 11:55 agis_schedconf.cvmfs.json
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas   1593041 Jul 23 11:55 agis_ddmendpoints.agis.ALL.json
[2025-07-23 13:22:11] drwx------. 4 boincer umatlas      4096 Jul 23 11:55 pilot3
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas      7159 Jul 23 13:18 init_data.xml
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas 279238305 Jul 23 13:20 HITS.45697472._003967.pool.root.1
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas       529 Jul 23 13:20 boinc_task_state.xml
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas      1064 Jul 23 13:21 memory_monitor_summary.json
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas    313813 Jul 23 13:21 log.45697472._003967.job.log.tgz.1
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas      7791 Jul 23 13:21 heartbeat.json
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 13:22 boinc_mmap_file
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas        27 Jul 23 13:22 wrapper_checkpoint.txt
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas       823 Jul 23 13:22 pilotlog.txt
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas        95 Jul 23 13:22 pilot_heartbeat.json
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas    485001 Jul 23 13:22 log.45697472._003967.job.log.1
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas       357 Jul 23 13:22 output.list
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas       620 Jul 23 13:22 runtime_log
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas    819200 Jul 23 13:22 result.tar.gz
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas      8655 Jul 23 13:22 runtime_log.err
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas       656 Jul 23 13:22 gSGNDm9Ejy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxBLLDmCfwC6n.diag
[2025-07-23 13:22:11] -rw-r--r--. 1 boincer umatlas     22450 Jul 23 13:22 stderr.txt
[2025-07-23 13:22:11] HITS file was successfully produced:
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas 279238305 Jul 23 13:20 shared/HITS.pool.root.1
[2025-07-23 13:22:11]  *** Contents of shared directory: ***
[2025-07-23 13:22:11] total 602480
[2025-07-23 13:22:11] -rw-r--r--. 2 boincer umatlas 336308212 Jul 23 11:55 ATLAS.root_0
[2025-07-23 13:22:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 11:55 start_atlas.sh
[2025-07-23 13:22:11] -rw-r--r--. 2 boincer umatlas    542902 Jul 23 11:55 input.tar.gz
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas 279238305 Jul 23 13:20 HITS.pool.root.1
[2025-07-23 13:22:11] -rw-------. 1 boincer umatlas    819200 Jul 23 13:22 result.tar.gz
13:22:12 (3182192): run_atlas exited; CPU time 33448.810788
13:22:12 (3182192): called boinc_finish(0)

</stderr_txt>
]]>

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