Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:30:15 (1906109): wrapper (7.7.26015): starting
23:30:15 (1906109): wrapper: running run_atlas (--nthreads 12)
[2025-07-23 23:30:15] Arguments: --nthreads 12
[2025-07-23 23:30:15] Threads: 12
[2025-07-23 23:30:15] Checking for CVMFS
[2025-07-23 23:30:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 23:30:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 23:30:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 23:30:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 23:30:16] 2.13.1.0 8846 27654 143316 148672 1 196 33812110 46080000 8026 130560 0 242649742 99.905 67714741 26936 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-23 23:30:16] CVMFS is ok
[2025-07-23 23:30:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 23:30:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 23:30:16] Further information can be found at the LHC@home message board.
[2025-07-23 23:30:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 23:30:16] Checking for apptainer binary...
[2025-07-23 23:30:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 23:30:16] Running /usr/bin/apptainer --version
[2025-07-23 23:30:16] apptainer version 1.4.1-1.el9
[2025-07-23 23:30:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 23:30:16] mff2101.farm.particle.cz
[2025-07-23 23:30:16] apptainer works
[2025-07-23 23:30:16] Set ATHENA_PROC_NUMBER=12
[2025-07-23 23:30:16] Set ATHENA_CORE_NUMBER=12
[2025-07-23 23:30:16] Starting ATLAS job with PandaID=6741890252
[2025-07-23 23:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 00:55:34]  *** The last 200 lines of the pilot log: ***
[2025-07-24 00:55:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-24 00:55:34]  replicas=None
[2025-07-24 00:55:34]  scope=mc23_13p6TeV
[2025-07-24 00:55:34]  status=None
[2025-07-24 00:55:34]  status_code=0
[2025-07-24 00:55:34]  storage_token=
[2025-07-24 00:55:34]  surl=/scratch/.boinc/slots/0/PanDA_Pilot-6741890252/log.45697472._004390.job.log.tgz.1
[2025-07-24 00:55:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/94/log.45697472._004390.job.log.tgz.1
[2025-07-24 00:55:34]  workdir=None
[2025-07-24 00:55:34] ]
[2025-07-24 00:55:34] 2025-07-23 22:54:54,892 | INFO     | transferring file log.45697472._004390.job.log.tgz.1 from /scratch/.boinc/slots/0/PanDA_Pilot-6741890252/log.45697472._004390.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-24 00:55:34] 2025-07-23 22:54:54,892 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/0/PanDA_Pilot-6741890252/log.45697472._004390.job.log.tgz.1 /scratch/.boinc/slots/0/log.45697472._004390.j
[2025-07-24 00:55:34] 2025-07-23 22:54:54,920 | INFO     | adding to output.list: log.45697472._004390.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/94/log.45697472._004390.job.log.tg
[2025-07-24 00:55:34] 2025-07-23 22:54:54,921 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 00:55:34] 2025-07-23 22:54:54,921 | INFO     | summary of transferred files:
[2025-07-24 00:55:34] 2025-07-23 22:54:54,921 | INFO     |  -- lfn=log.45697472._004390.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 00:55:34] 2025-07-23 22:54:54,921 | INFO     | stage-out finished correctly
[2025-07-24 00:55:34] 2025-07-23 22:54:55,343 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 00:55:34] 2025-07-23 22:54:56,282 | INFO     | 5069s have passed since pilot start - server update state is 'RUNNING'
[2025-07-24 00:55:34] 2025-07-23 22:54:56,806 | INFO     | job 6741890252 has state=finished
[2025-07-24 00:55:34] 2025-07-23 22:54:56,807 | INFO     | preparing for final server update for job 6741890252 in state='finished'
[2025-07-24 00:55:34] 2025-07-23 22:54:56,807 | INFO     | this job has now completed (state=finished)
[2025-07-24 00:55:34] 2025-07-23 22:54:56,807 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 00:55:34] 2025-07-23 22:54:56,808 | INFO     | log transfer has been attempted: DONE
[2025-07-24 00:55:34] 2025-07-23 22:54:56,808 | INFO     | job 6741890252 has finished - writing final server update
[2025-07-24 00:55:34] 2025-07-23 22:54:56,809 | INFO     | total number of processed events: 400 (read)
[2025-07-24 00:55:34] 2025-07-23 22:54:56,809 | INFO     | executing command: lscpu
[2025-07-24 00:55:34] 2025-07-23 22:54:56,874 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 00:55:34] 2025-07-23 22:54:57,101 | INFO     | monitor loop #365: job 0:6741890252 is in state 'finished'
[2025-07-24 00:55:34] 2025-07-23 22:54:57,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 00:55:34] 2025-07-23 22:54:59,604 | INFO     | monitor loop #366: job 0:6741890252 is in state 'finished'
[2025-07-24 00:55:34] 2025-07-23 22:54:59,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,077 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 00:55:34] 2025-07-23 22:55:02,092 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2775.726406250001
[2025-07-24 00:55:34] 2025-07-23 22:55:02,108 | INFO     | monitor loop #367: job 0:6741890252 is in state 'finished'
[2025-07-24 00:55:34] 2025-07-23 22:55:02,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,111 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6741890252/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,112 | INFO     | extracted standard info from prmon json
[2025-07-24 00:55:34] 2025-07-23 22:55:02,112 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 00:55:34] 2025-07-23 22:55:02,112 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 00:55:34] 2025-07-23 22:55:02,112 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 00:55:34] 2025-07-23 22:55:02,112 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 00:55:34] 2025-07-23 22:55:02,114 | INFO     | fitting pss+swap vs Time
[2025-07-24 00:55:34] 2025-07-23 22:55:02,115 | INFO     | sum of square deviations: 136095575.0
[2025-07-24 00:55:34] 2025-07-23 22:55:02,115 | INFO     | sum of deviations: -2610693982.0000005
[2025-07-24 00:55:34] 2025-07-23 22:55:02,115 | INFO     | mean x: 1753308850.5
[2025-07-24 00:55:34] 2025-07-23 22:55:02,115 | INFO     | mean y: 2794193.8684210526
[2025-07-24 00:55:34] 2025-07-23 22:55:02,115 | INFO     | -- intersect: 33636164452.877125
[2025-07-24 00:55:34] 2025-07-23 22:55:02,115 | INFO     | intersect: 33636164452.877125
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | chi2: 0.009724731959082905
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | -- intersect: 33636164452.877125
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | current memory leak: -19.18 B/s (using 76 data points, chi2=0.01)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | could have reported an average CPU frequency of 2753 MHz (6 samples)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | ..............................
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | . Timing measurements:
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | . get job = 0 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,116 | INFO     | . initial setup = 1 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,117 | INFO     | . payload setup = 7 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,117 | INFO     | . stage-in = 0 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,117 | INFO     | . payload execution = 5038 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,117 | INFO     | . stage-out = 0 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,117 | INFO     | . log creation = 0 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,117 | INFO     | ..............................
[2025-07-24 00:55:34] 2025-07-23 22:55:02,258 | INFO     | 
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | job summary report
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | --------------------------------------------------
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | PanDA job id: 6741890252
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | task id: 45697472
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | errors: (none)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | pilot state: finished 
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | transexitcode: 0
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | exeerrorcode: 0
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | exeerrordiag: 
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | exitcode: 0
[2025-07-24 00:55:34] 2025-07-23 22:55:02,259 | INFO     | exitmsg: OK
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | cpuconsumptiontime: 53745 s
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | nevents: 400
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | neventsw: 0
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | pid: 1917209
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | pgrp: 1917209
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | corecount: 12
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | event service: False
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | sizes: {0: 2397364, 1: 2397563, 6: 2397825, 11: 2397853, 5049: 2424260, 5050: 2433444, 5057: 2433582}
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | --------------------------------------------------
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | 
[2025-07-24 00:55:34] 2025-07-23 22:55:02,260 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-07-24 00:55:34] 2025-07-23 22:55:02,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 00:55:34] 2025-07-23 22:55:02,291 | INFO     | job 6741890252 has completed (purged errors)
[2025-07-24 00:55:34] 2025-07-23 22:55:02,292 | INFO     | overall cleanup function is called
[2025-07-24 00:55:34] 2025-07-23 22:55:03,301 | INFO     | --- collectZombieJob: --- 10, [1917209]
[2025-07-24 00:55:34] 2025-07-23 22:55:03,301 | INFO     | zombie collector waiting for pid 1917209
[2025-07-24 00:55:34] 2025-07-23 22:55:03,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 00:55:34] 2025-07-23 22:55:03,301 | INFO     | collected zombie processes
[2025-07-24 00:55:34] 2025-07-23 22:55:03,301 | INFO     | will attempt to kill all subprocesses of pid=1917209
[2025-07-24 00:55:34] 2025-07-23 22:55:03,662 | INFO     | process IDs to be killed: [1917209] (in reverse order)
[2025-07-24 00:55:34] 2025-07-23 22:55:03,784 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 00:55:34] 2025-07-23 22:55:03,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 00:55:34] 2025-07-23 22:55:03,797 | INFO     | did not find any defunct processes belonging to 1917209
[2025-07-24 00:55:34] 2025-07-23 22:55:03,807 | INFO     | did not find any defunct processes belonging to 1917209
[2025-07-24 00:55:34] 2025-07-23 22:55:03,807 | INFO     | ready for new job
[2025-07-24 00:55:34] 2025-07-23 22:55:03,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 00:55:34] 2025-07-23 22:55:03,809 | INFO     | ***************************************
[2025-07-24 00:55:34] 2025-07-23 22:55:03,810 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 00:55:34] 2025-07-23 22:55:03,810 | INFO     | ***************************************
[2025-07-24 00:55:34] 2025-07-23 22:55:03,810 | INFO     | 
[2025-07-24 00:55:34] 2025-07-23 22:55:03,816 | INFO     | architecture information:
[2025-07-24 00:55:34] 2025-07-23 22:55:03,816 | INFO     | executing command: cat /etc/os-release
[2025-07-24 00:55:34] 2025-07-23 22:55:03,839 | INFO     | cat /etc/os-release:
[2025-07-24 00:55:34] NAME="CentOS Linux"
[2025-07-24 00:55:34] VERSION="7 (Core)"
[2025-07-24 00:55:34] ID="centos"
[2025-07-24 00:55:34] ID_LIKE="rhel fedora"
[2025-07-24 00:55:34] VERSION_ID="7"
[2025-07-24 00:55:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 00:55:34] ANSI_COLOR="0;31"
[2025-07-24 00:55:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 00:55:34] HOME_URL="https://www.centos.org/"
[2025-07-24 00:55:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 00:55:34] 
[2025-07-24 00:55:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 00:55:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 00:55:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 00:55:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 00:55:34] 
[2025-07-24 00:55:34] 2025-07-23 22:55:03,840 | INFO     | ***************************************
[2025-07-24 00:55:34] 2025-07-23 22:55:04,343 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-07-24 00:55:34] 2025-07-23 22:55:04,368 | INFO     | sufficient remaining disk space (1675412635648 B)
[2025-07-24 00:55:34] 2025-07-23 22:55:04,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 00:55:34] 2025-07-23 22:55:04,368 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 00:55:34] 2025-07-23 22:55:04,369 | INFO     | update_server=False
[2025-07-24 00:55:34] 2025-07-23 22:55:04,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 00:55:34] 2025-07-23 22:55:04,612 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-24 00:55:34] 2025-07-23 22:55:04,612 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-24 00:55:34] 2025-07-23 22:55:04,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 00:55:34] 2025-07-23 22:55:04,613 | INFO     | will abort loop
[2025-07-24 00:55:34] 2025-07-23 22:55:05,017 | INFO     | all payload control threads have been joined
[2025-07-24 00:55:34] 2025-07-23 22:55:05,292 | INFO     | all job control threads have been joined
[2025-07-24 00:55:34] 2025-07-23 22:55:05,374 | INFO     | [job] retrieve thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:05,409 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:05,418 | INFO     | all data control threads have been joined
[2025-07-24 00:55:34] 2025-07-23 22:55:05,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 00:55:34] 2025-07-23 22:55:05,618 | INFO     | [job] job monitor thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:05,914 | INFO     | [job] validate thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:05,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 00:55:34] 2025-07-23 22:55:06,018 | INFO     | [payload] control thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,123 | INFO     | [data] copytool_in thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,189 | INFO     | [payload] validate_post thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,297 | INFO     | [job] control thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,378 | INFO     | [payload] failed_post thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,413 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,423 | INFO     | [data] control thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:06,679 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:07,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 00:55:34] 2025-07-23 22:55:07,536 | INFO     | [data] copytool_out thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:08,230 | INFO     | [job] queue monitor thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:09,957 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:15,164 | INFO     | job.realtimelogging is not enabled
[2025-07-24 00:55:34] 2025-07-23 22:55:16,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 00:55:34] 2025-07-23 22:55:17,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066786510656)>', '<ExcThread(monitor, started 140066416465664)>']
[2025-07-24 00:55:34] 2025-07-23 22:55:22,372 | INFO     | all workflow threads have been joined
[2025-07-24 00:55:34] 2025-07-23 22:55:22,373 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 00:55:34] 2025-07-23 22:55:22,373 | INFO     | traces error code: 0
[2025-07-24 00:55:34] 2025-07-23 22:55:22,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 00:55:34] 2025-07-23 22:55:33,807 | INFO     | PID=1910091 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 00:55:34] 2025-07-23 22:55:33,808 | INFO     | .. there are 11 such processes running
[2025-07-24 00:55:34] 2025-07-23 22:55:33,809 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 00:55:34] 2025-07-23 22:55:33,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 00:55:34] 2025-07-23 22:55:33,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 00:55:34] 2025-07-23 22:55:33,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 00:55:34] 2025-07-23 22:55:33,809 | INFO     | [monitor] control thread has ended
[2025-07-24 00:55:34] 2025-07-23 22:55:33,987 [wrapper] ==== pilot stdout END ====
[2025-07-24 00:55:34] 2025-07-23 22:55:33,991 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 00:55:34] 2025-07-23 22:55:33,995 [wrapper] pilotpid: 1910091
[2025-07-24 00:55:34] 2025-07-23 22:55:33,999 [wrapper] Pilot exit status: 0
[2025-07-24 00:55:34] 2025-07-23 22:55:34,013 [wrapper] pandaids: 6741890252
[2025-07-24 00:55:34] 2025-07-23 22:55:34,096 [wrapper] cleanup supervisor_pilot 2109937 1910092
[2025-07-24 00:55:34] 2025-07-23 22:55:34,100 [wrapper] Test setup, not cleaning
[2025-07-24 00:55:34] 2025-07-23 22:55:34,103 [wrapper] apfmon messages muted
[2025-07-24 00:55:34] 2025-07-23 22:55:34,107 [wrapper] ==== wrapper stdout END ====
[2025-07-24 00:55:34] 2025-07-23 22:55:34,110 [wrapper] ==== wrapper stderr END ====
[2025-07-24 00:55:34]  *** Error codes and diagnostics ***
[2025-07-24 00:55:34]     "exeErrorCode": 0,
[2025-07-24 00:55:34]     "exeErrorDiag": "",
[2025-07-24 00:55:34]     "pilotErrorCode": 0,
[2025-07-24 00:55:34]     "pilotErrorDiag": "",
[2025-07-24 00:55:34]  *** Listing of results directory ***
[2025-07-24 00:55:34] total 595496
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc    530466 Jul 23 09:44 pilot3.tar.gz
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc      5112 Jul 23 10:15 queuedata.json
[2025-07-24 00:55:34] -rwx------ 1 boinc boinc     36292 Jul 23 10:17 runpilot2-wrapper.sh
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc       100 Jul 23 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 00:55:34] -rwxr-xr-x 1 boinc boinc      7986 Jul 23 23:30 run_atlas
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc       105 Jul 23 23:30 job.xml
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc      6664 Jul 23 23:30 init_data.xml
[2025-07-24 00:55:34] -rw-r--r-- 2 boinc boinc 331059317 Jul 23 23:30 EVNT.45697470._000199.pool.root.1
[2025-07-24 00:55:34] -rw-r--r-- 2 boinc boinc     15095 Jul 23 23:30 start_atlas.sh
[2025-07-24 00:55:34] drwxrwx--x 2 boinc boinc      4096 Jul 23 23:30 shared
[2025-07-24 00:55:34] -rw-r--r-- 2 boinc boinc    542899 Jul 23 23:30 input.tar.gz
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc         0 Jul 23 23:30 boinc_lockfile
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc      2612 Jul 23 23:30 pandaJob.out
[2025-07-24 00:55:34] -rw------- 1 boinc boinc    979632 Jul 23 23:30 agis_schedconf.cvmfs.json
[2025-07-24 00:55:34] -rw------- 1 boinc boinc   1593041 Jul 23 23:30 agis_ddmendpoints.agis.ALL.json
[2025-07-24 00:55:34] drwx------ 4 boinc boinc      4096 Jul 23 23:30 pilot3
[2025-07-24 00:55:34] -rw------- 1 boinc boinc 273127754 Jul 24 00:54 HITS.45697472._004390.pool.root.1
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc       530 Jul 24 00:54 boinc_task_state.xml
[2025-07-24 00:55:34] -rw------- 1 boinc boinc      1035 Jul 24 00:54 memory_monitor_summary.json
[2025-07-24 00:55:34] -rw------- 1 boinc boinc    371973 Jul 24 00:54 log.45697472._004390.job.log.tgz.1
[2025-07-24 00:55:34] -rw------- 1 boinc boinc      7771 Jul 24 00:55 heartbeat.json
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc      8192 Jul 24 00:55 boinc_mmap_file
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc        27 Jul 24 00:55 wrapper_checkpoint.txt
[2025-07-24 00:55:34] -rw------- 1 boinc boinc       823 Jul 24 00:55 pilotlog.txt
[2025-07-24 00:55:34] -rw------- 1 boinc boinc        95 Jul 24 00:55 pilot_heartbeat.json
[2025-07-24 00:55:34] -rw------- 1 boinc boinc    489155 Jul 24 00:55 log.45697472._004390.job.log.1
[2025-07-24 00:55:34] -rw------- 1 boinc boinc       357 Jul 24 00:55 output.list
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc       620 Jul 24 00:55 runtime_log
[2025-07-24 00:55:34] -rw------- 1 boinc boinc    880640 Jul 24 00:55 result.tar.gz
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc      8721 Jul 24 00:55 runtime_log.err
[2025-07-24 00:55:34] -rw------- 1 boinc boinc       664 Jul 24 00:55 h0cLDmIqjy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7GLLDml35yan.diag
[2025-07-24 00:55:34] -rw-r--r-- 1 boinc boinc     21908 Jul 24 00:55 stderr.txt
[2025-07-24 00:55:34] HITS file was successfully produced:
[2025-07-24 00:55:34] -rw------- 1 boinc boinc 273127754 Jul 24 00:54 shared/HITS.pool.root.1
[2025-07-24 00:55:34]  *** Contents of shared directory: ***
[2025-07-24 00:55:34] total 591448
[2025-07-24 00:55:34] -rw-r--r-- 2 boinc boinc 331059317 Jul 23 23:30 ATLAS.root_0
[2025-07-24 00:55:34] -rw-r--r-- 2 boinc boinc     15095 Jul 23 23:30 start_atlas.sh
[2025-07-24 00:55:34] -rw-r--r-- 2 boinc boinc    542899 Jul 23 23:30 input.tar.gz
[2025-07-24 00:55:34] -rw------- 1 boinc boinc 273127754 Jul 24 00:54 HITS.pool.root.1
[2025-07-24 00:55:34] -rw------- 1 boinc boinc    880640 Jul 24 00:55 result.tar.gz
00:55:35 (1906109): run_atlas exited; CPU time 53850.108918
00:55:35 (1906109): called boinc_finish(0)

</stderr_txt>
]]>

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