Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:44:52 (1927679): wrapper (7.7.26015): starting
08:44:52 (1927679): wrapper: running run_atlas (--nthreads 12)
[2025-07-23 08:44:52] Arguments: --nthreads 12
[2025-07-23 08:44:52] Threads: 12
[2025-07-23 08:44:52] Checking for CVMFS
[2025-07-23 08:44:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 08:44:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 08:44:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 08:44:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 08:44:54] 2.11.5.0 7073 31578 179840 148664 2 194 42076548 45568001 13897 130560 0 240740869 99.752 184158130 27179 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-23 08:44:54] CVMFS is ok
[2025-07-23 08:44:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 08:44:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 08:44:54] Further information can be found at the LHC@home message board.
[2025-07-23 08:44:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 08:44:54] Checking for apptainer binary...
[2025-07-23 08:44:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 08:44:54] Running /usr/bin/apptainer --version
[2025-07-23 08:44:54] apptainer version 1.4.1-1.el9
[2025-07-23 08:44:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 08:44:54] wns0053.triumf.lcg
[2025-07-23 08:44:54] apptainer works
[2025-07-23 08:44:54] Set ATHENA_PROC_NUMBER=12
[2025-07-23 08:44:54] Set ATHENA_CORE_NUMBER=12
[2025-07-23 08:44:54] Starting ATLAS job with PandaID=6742327949
[2025-07-23 08:44:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 08:49:09]  *** The last 200 lines of the pilot log: ***
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | wrong length of table data, x=[1753285563.0], y=[1211.0] (must be same and length>=4)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | could have reported an average CPU frequency of 2418 MHz (4 samples)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | ..............................
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . Timing measurements:
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . get job = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . initial setup = 3 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . payload setup = 14 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . stage-in = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . payload execution = 35 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . stage-out = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . log creation = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | ..............................
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742327949/pilotlog.txt
[2025-07-23 08:49:09] 2025-07-23 15:48:35,387 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-23 08:49:09] - Log from pilotlog.txt -
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742327949/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | INFO     | extracted standard info from prmon json
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | wrong length of table data, x=[1753285563.0], y=[1211.0] (must be same and length>=4)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | could have reported an average CPU frequency of 2418 MHz (4 samples)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | ..............................
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . Timing measurements:
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . get job = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . initial setup = 3 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . payload setup = 14 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . stage-in = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . payload execution = 35 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . stage-out = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . log creation = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | ..............................
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742327949/pilotlog.txt
[2025-07-23 08:49:09] 2025-07-23 15:48:35,387 | WARNING  | 
[2025-07-23 08:49:09] [begin log extracts]
[2025-07-23 08:49:09] - Log from pilotlog.txt -
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742327949/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | INFO     | extracted standard info from prmon json
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 08:49:09] 2025-07-23 15:48:35,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | WARNING  | wrong length of table data, x=[1753285563.0], y=[1211.0] (must be same and length>=4)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | could have reported an average CPU frequency of 2418 MHz (4 samples)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | ..............................
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . Timing measurements:
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . get job = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,372 | INFO     | . initial setup = 3 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . payload setup = 14 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . stage-in = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . payload execution = 35 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . stage-out = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | . log creation = 0 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | ..............................
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 08:49:09] 2025-07-23 15:48:35,373 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742327949/pilotlog.txt
[2025-07-23 08:49:09] [end log extracts]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,387 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,388 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | 
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | job summary report
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | --------------------------------------------------
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | PanDA job id: 6742327949
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | task id: 45697472
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-23 08:46:21,446 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | pilot state: failed 
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | transexitcode: 65
[2025-07-23 08:49:09] 2025-07-23 15:48:35,643 | INFO     | exeerrorcode: 65
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | exitcode: 65
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | cpuconsumptiontime: 16 s
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | nevents: 0
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | neventsw: 0
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | pid: 1937565
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | pgrp: 1937565
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | corecount: 12
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | event service: False
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | sizes: {0: 2397362, 1: 2397561, 10: 2397823, 11: 2397851, 53: 2421343, 55: 2425851, 178: 2425989}
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | --------------------------------------------------
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | 
[2025-07-23 08:49:09] 2025-07-23 15:48:35,644 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-23 08:49:09] 2025-07-23 15:48:35,678 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,678 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,679 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 08:49:09] 2025-07-23 15:48:35,680 | INFO     | job 6742327949 has completed (purged errors)
[2025-07-23 08:49:09] 2025-07-23 15:48:35,680 | INFO     | overall cleanup function is called
[2025-07-23 08:49:09] 2025-07-23 15:48:36,686 | INFO     | --- collectZombieJob: --- 10, [1937565]
[2025-07-23 08:49:09] 2025-07-23 15:48:36,686 | INFO     | zombie collector waiting for pid 1937565
[2025-07-23 08:49:09] 2025-07-23 15:48:36,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 08:49:09] 2025-07-23 15:48:36,686 | INFO     | collected zombie processes
[2025-07-23 08:49:09] 2025-07-23 15:48:36,686 | INFO     | will attempt to kill all subprocesses of pid=1937565
[2025-07-23 08:49:09] 2025-07-23 15:48:36,825 | INFO     | process IDs to be killed: [1937565] (in reverse order)
[2025-07-23 08:49:09] 2025-07-23 15:48:36,894 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 08:49:09] 2025-07-23 15:48:36,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 08:49:09] 2025-07-23 15:48:36,901 | INFO     | did not find any defunct processes belonging to 1937565
[2025-07-23 08:49:09] 2025-07-23 15:48:36,907 | INFO     | did not find any defunct processes belonging to 1937565
[2025-07-23 08:49:09] 2025-07-23 15:48:36,907 | INFO     | ready for new job
[2025-07-23 08:49:09] 2025-07-23 15:48:36,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 08:49:09] 2025-07-23 15:48:36,908 | INFO     | ***************************************
[2025-07-23 08:49:09] 2025-07-23 15:48:36,908 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 08:49:09] 2025-07-23 15:48:36,908 | INFO     | ***************************************
[2025-07-23 08:49:09] 2025-07-23 15:48:36,908 | INFO     | 
[2025-07-23 08:49:09] 2025-07-23 15:48:36,910 | INFO     | architecture information:
[2025-07-23 08:49:09] 2025-07-23 15:48:36,910 | INFO     | executing command: cat /etc/os-release
[2025-07-23 08:49:09] 2025-07-23 15:48:36,925 | INFO     | cat /etc/os-release:
[2025-07-23 08:49:09] NAME="CentOS Linux"
[2025-07-23 08:49:09] VERSION="7 (Core)"
[2025-07-23 08:49:09] ID="centos"
[2025-07-23 08:49:09] ID_LIKE="rhel fedora"
[2025-07-23 08:49:09] VERSION_ID="7"
[2025-07-23 08:49:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 08:49:09] ANSI_COLOR="0;31"
[2025-07-23 08:49:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 08:49:09] HOME_URL="https://www.centos.org/"
[2025-07-23 08:49:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 08:49:09] 
[2025-07-23 08:49:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 08:49:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 08:49:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 08:49:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 08:49:09] 
[2025-07-23 08:49:09] 2025-07-23 15:48:36,925 | INFO     | ***************************************
[2025-07-23 08:49:09] 2025-07-23 15:48:37,428 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-23 08:49:09] 2025-07-23 15:48:37,441 | INFO     | sufficient remaining disk space (1939548930048 B)
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | INFO     | update_server=False
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:49:09] 2025-07-23 15:48:37,442 | INFO     | aborting loop
[2025-07-23 08:49:09] 2025-07-23 15:48:38,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 08:49:09] 2025-07-23 15:48:38,184 | INFO     | all job control threads have been joined
[2025-07-23 08:49:09] 2025-07-23 15:48:38,397 | INFO     | all data control threads have been joined
[2025-07-23 08:49:09] 2025-07-23 15:48:38,448 | INFO     | [job] retrieve thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:38,448 | INFO     | [job] queue monitor thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:38,448 | INFO     | [job] job monitor thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:38,494 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:38,517 | INFO     | [payload] failed_post thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:38,872 | INFO     | [data] copytool_in thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:38,953 | INFO     | all payload control threads have been joined
[2025-07-23 08:49:09] 2025-07-23 15:48:39,190 | INFO     | [job] control thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,229 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,269 | INFO     | [payload] validate_post thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,403 | INFO     | [data] control thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,600 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,716 | INFO     | [job] validate thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,872 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:39,959 | INFO     | [payload] control thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:40,038 | INFO     | [data] copytool_out thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:40,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 08:49:09] 2025-07-23 15:48:44,058 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 08:49:09] 2025-07-23 15:48:44,114 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887570614080)>', '<ExcThread(monitor, started 139886648604416)>']
[2025-07-23 08:49:09] 2025-07-23 15:48:49,140 | INFO     | all workflow threads have been joined
[2025-07-23 08:49:09] 2025-07-23 15:48:49,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 08:49:09] 2025-07-23 15:48:49,141 | INFO     | traces error code: 0
[2025-07-23 08:49:09] 2025-07-23 15:48:49,141 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 08:49:09] 2025-07-23 15:49:08,142 | INFO     | PID=1931256 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 08:49:09] 2025-07-23 15:49:08,142 | INFO     | .. there are 14 such processes running
[2025-07-23 08:49:09] 2025-07-23 15:49:08,143 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 08:49:09] 2025-07-23 15:49:08,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 08:49:09] 2025-07-23 15:49:08,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 08:49:09] 2025-07-23 15:49:08,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 08:49:09] 2025-07-23 15:49:08,143 | CRITICAL | thread 'MainThread' is not alive
[2025-07-23 08:49:09] 2025-07-23 15:49:08,144 | INFO     | [monitor] control thread has ended
[2025-07-23 08:49:09] 2025-07-23 15:49:08,277 [wrapper] ==== pilot stdout END ====
[2025-07-23 08:49:09] 2025-07-23 15:49:08,317 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 08:49:09] 2025-07-23 15:49:08,341 [wrapper] pilotpid: 1931256
[2025-07-23 08:49:09] 2025-07-23 15:49:08,368 [wrapper] Pilot exit status: 0
[2025-07-23 08:49:09] 2025-07-23 15:49:08,552 [wrapper] pandaids: 6742327949
[2025-07-23 08:49:09] 2025-07-23 15:49:08,698 [wrapper] cleanup supervisor_pilot 1931262 1931257
[2025-07-23 08:49:09] 2025-07-23 15:49:08,706 [wrapper] Test setup, not cleaning
[2025-07-23 08:49:09] 2025-07-23 15:49:08,708 [wrapper] apfmon messages muted
[2025-07-23 08:49:09] 2025-07-23 15:49:08,710 [wrapper] ==== wrapper stdout END ====
[2025-07-23 08:49:09] 2025-07-23 15:49:08,716 [wrapper] ==== wrapper stderr END ====
[2025-07-23 08:49:09]  *** Error codes and diagnostics ***
[2025-07-23 08:49:09]     "exeErrorCode": 65,
[2025-07-23 08:49:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-23 08:49:09]     "pilotErrorCode": 1305,
[2025-07-23 08:49:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-23 08:49:09]  *** Listing of results directory ***
[2025-07-23 08:49:09] total 330776
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc      5112 Jul 23 04:54 queuedata.json
[2025-07-23 08:49:09] -rwx------. 1 boinc boinc     36292 Jul 23 04:55 runpilot2-wrapper.sh
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc    530466 Jul 23 04:55 pilot3.tar.gz
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc       100 Jul 23 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 08:49:09] -rwxr-xr-x. 1 boinc boinc      7986 Jul 23 08:44 run_atlas
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc       105 Jul 23 08:44 job.xml
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc      6595 Jul 23 08:44 init_data.xml
[2025-07-23 08:49:09] -rw-r--r--. 2 boinc boinc 334639007 Jul 23 08:44 EVNT.45697470._000234.pool.root.1
[2025-07-23 08:49:09] -rw-r--r--. 2 boinc boinc     15095 Jul 23 08:44 start_atlas.sh
[2025-07-23 08:49:09] drwxrwx--x. 2 boinc boinc      4096 Jul 23 08:44 shared
[2025-07-23 08:49:09] -rw-r--r--. 2 boinc boinc    542912 Jul 23 08:44 input.tar.gz
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc         0 Jul 23 08:44 boinc_lockfile
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc      2614 Jul 23 08:44 pandaJob.out
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc    978487 Jul 23 08:45 agis_schedconf.cvmfs.json
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc   1593041 Jul 23 08:45 agis_ddmendpoints.agis.ALL.json
[2025-07-23 08:49:09] drwx------. 4 boinc boinc      4096 Jul 23 08:45 pilot3
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc       523 Jul 23 08:46 boinc_task_state.xml
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc       958 Jul 23 08:46 memory_monitor_summary.json
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc     21132 Jul 23 08:46 log.45697472._005836.job.log.tgz.1
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc        95 Jul 23 08:48 pilot_heartbeat.json
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc      8401 Jul 23 08:48 heartbeat.json
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc        22 Jul 23 08:49 wrapper_checkpoint.txt
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc      8192 Jul 23 08:49 boinc_mmap_file
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc       893 Jul 23 08:49 pilotlog.txt
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc     78635 Jul 23 08:49 log.45697472._005836.job.log.1
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc       188 Jul 23 08:49 output.list
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc       620 Jul 23 08:49 runtime_log
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc    122880 Jul 23 08:49 result.tar.gz
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc      8485 Jul 23 08:49 runtime_log.err
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc       643 Jul 23 08:49 nyDODmcFny7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8CwKDm6Lq3Fo.diag
[2025-07-23 08:49:09] -rw-r--r--. 1 boinc boinc     21775 Jul 23 08:49 stderr.txt
[2025-07-23 08:49:09] No HITS result produced
[2025-07-23 08:49:09]  *** Contents of shared directory: ***
[2025-07-23 08:49:09] total 327468
[2025-07-23 08:49:09] -rw-r--r--. 2 boinc boinc 334639007 Jul 23 08:44 ATLAS.root_0
[2025-07-23 08:49:09] -rw-r--r--. 2 boinc boinc     15095 Jul 23 08:44 start_atlas.sh
[2025-07-23 08:49:09] -rw-r--r--. 2 boinc boinc    542912 Jul 23 08:44 input.tar.gz
[2025-07-23 08:49:09] -rw-------. 1 boinc boinc    122880 Jul 23 08:49 result.tar.gz
08:49:10 (1927679): run_atlas exited; CPU time 22.669748
08:49:10 (1927679): called boinc_finish(0)

</stderr_txt>
]]>

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