Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:06:54 (58166): wrapper (7.7.26015): starting
13:06:54 (58166): wrapper: running run_atlas (--nthreads 3)
[2025-07-24 13:06:54] Arguments: --nthreads 3
[2025-07-24 13:06:54] Threads: 3
[2025-07-24 13:06:54] Checking for CVMFS
[2025-07-24 13:06:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 13:06:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 13:06:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 13:06:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 13:06:55] 2.9.2.0 2944 226 56028 148695 2 57 35890065 36864001 0 130560 0 145079 99.982 14506 8681 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-24 13:06:55] CVMFS is ok
[2025-07-24 13:06:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 13:06:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 13:06:55] Further information can be found at the LHC@home message board.
[2025-07-24 13:06:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 13:06:55] Checking for apptainer binary...
[2025-07-24 13:06:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 13:06:55] Running /usr/bin/apptainer --version
[2025-07-24 13:06:55] apptainer version 1.4.1-1.1
[2025-07-24 13:06:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 13:06:55] thA312a
[2025-07-24 13:06:55] apptainer works
[2025-07-24 13:06:55] Set ATHENA_PROC_NUMBER=3
[2025-07-24 13:06:55] Set ATHENA_CORE_NUMBER=3
[2025-07-24 13:06:55] Starting ATLAS job with PandaID=6741883572
[2025-07-24 13:06:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 15:05:48]  *** The last 200 lines of the pilot log: ***
[2025-07-24 15:05:48] 2025-07-24 13:05:15,651 | INFO     | -- intersect: -67026841931.52378
[2025-07-24 15:05:48] 2025-07-24 13:05:15,651 | INFO     | intersect: -67026841931.52378
[2025-07-24 15:05:48] 2025-07-24 13:05:15,651 | INFO     | chi2: 1.5207364642176833
[2025-07-24 15:05:48] 2025-07-24 13:05:15,651 | INFO     | sum of square deviations: 424045160.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,651 | INFO     | sum of deviations: 17863704759.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | mean x: 1753358595.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | mean y: 2347563.3063063063
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | -- intersect: -73861201021.31862
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | intersect: -73861201021.31862
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | chi2: 1.5214751032576386
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | current chi2=1.5214751032576386 (change=-0.048571140189979094 %)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | right removable region: 110
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | sum of square deviations: 424045160.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | sum of deviations: 1972967652.0000002
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | mean x: 1753358900.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | mean y: 2390410.189189189
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | -- intersect: -8155515205.444541
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | intersect: -8155515205.444541
[2025-07-24 15:05:48] 2025-07-24 13:05:15,652 | INFO     | chi2: 0.009052450424077598
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | current chi2=0.009052450424077598 (change=99.40473246765116 %)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | sum of square deviations: 369281342.5
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | sum of deviations: 1304077428.4999998
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | mean x: 1753359052.5
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | mean y: 2392305.386792453
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | -- intersect: -6189407012.016838
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | intersect: -6189407012.016838
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | chi2: 0.004826165190048632
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | current chi2=0.004826165190048632 (change=46.6866432406848 %)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | sum of square deviations: 319447850.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | sum of deviations: 693392368.0000001
[2025-07-24 15:05:48] 2025-07-24 13:05:15,653 | INFO     | mean x: 1753359205.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | sufficient remaining disk space (264338669568 B)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | mean y: 2394170.2277227724
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | -- intersect: -3803441089.297573
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | intersect: -3803441089.297573
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | chi2: 0.004041639621336711
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | current chi2=0.004041639621336711 (change=16.255671694155488 %)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | left removable region: 30
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | sum of square deviations: 158737860.0
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | sum of deviations: -57931699.99999998
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | mean x: 1753359479.5
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | mean y: 2398599.675
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | -- intersect: 642290654.1511666
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | intersect: 642290654.1511666
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | chi2: 0.0028045920756426933
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | -- intersect: 642290654.1511666
[2025-07-24 15:05:48] 2025-07-24 13:05:15,654 | INFO     | current memory leak: -0.36 B/s (using 80 data points, chi2=0.00)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | could have reported an average CPU frequency of 4004 MHz (7 samples)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | ..............................
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . Timing measurements:
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . get job = 0 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . initial setup = 1 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . payload setup = 3 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . stage-in = 0 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . payload execution = 7069 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . stage-out = 0 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | . log creation = 0 s
[2025-07-24 15:05:48] 2025-07-24 13:05:15,655 | INFO     | ..............................
[2025-07-24 15:05:48] 2025-07-24 13:05:15,686 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6741883572: 2166430 B (within 2537553920 B limit)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,686 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6741883572/HITS.45697472._004005.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,686 | INFO     | total size of present files: 0 B (workdir size: 2166430 B)
[2025-07-24 15:05:48] 2025-07-24 13:05:15,686 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6741883572/HITS.45697472._004005.pool.root.1 since it does not exist
[2025-07-24 15:05:48] 2025-07-24 13:05:15,722 | INFO     | number of running child processes to parent process 68301: 1
[2025-07-24 15:05:48] 2025-07-24 13:05:15,722 | INFO     | maximum number of monitored processes: 6
[2025-07-24 15:05:48] 2025-07-24 13:05:15,722 | INFO     | aborting job monitoring since job object (job id=6741883572) has expired
[2025-07-24 15:05:48] 2025-07-24 13:05:15,875 | INFO     | PID=61803 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | 
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | job summary report
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | --------------------------------------------------
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | PanDA job id: 6741883572
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | task id: 45697472
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | errors: (none)
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | pilot state: finished 
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | transexitcode: 0
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | exeerrorcode: 0
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | exeerrordiag: 
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | exitcode: 0
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | exitmsg: OK
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | cpuconsumptiontime: 20528 s
[2025-07-24 15:05:48] 2025-07-24 13:05:16,018 | INFO     | nevents: 400
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | neventsw: 0
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | pid: 68301
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | pgrp: 68301
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | corecount: 3
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | event service: False
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | sizes: {0: 2397537, 3: 2397799, 11: 2397827, 7076: 2425272, 7077: 2434332, 7082: 2434470}
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | --------------------------------------------------
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | 
[2025-07-24 15:05:48] 2025-07-24 13:05:16,019 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-24 15:05:48] 2025-07-24 13:05:16,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | job 6741883572 has completed (purged errors)
[2025-07-24 15:05:48] 2025-07-24 13:05:16,034 | INFO     | overall cleanup function is called
[2025-07-24 15:05:48] 2025-07-24 13:05:17,041 | INFO     | --- collectZombieJob: --- 10, [68301]
[2025-07-24 15:05:48] 2025-07-24 13:05:17,041 | INFO     | zombie collector waiting for pid 68301
[2025-07-24 15:05:48] 2025-07-24 13:05:17,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 15:05:48] 2025-07-24 13:05:17,041 | INFO     | collected zombie processes
[2025-07-24 15:05:48] 2025-07-24 13:05:17,041 | INFO     | will attempt to kill all subprocesses of pid=68301
[2025-07-24 15:05:48] 2025-07-24 13:05:17,081 | INFO     | process IDs to be killed: [68301] (in reverse order)
[2025-07-24 15:05:48] 2025-07-24 13:05:17,105 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 15:05:48] 2025-07-24 13:05:17,105 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 15:05:48] 2025-07-24 13:05:17,106 | INFO     | did not find any defunct processes belonging to 68301
[2025-07-24 15:05:48] 2025-07-24 13:05:17,107 | INFO     | did not find any defunct processes belonging to 68301
[2025-07-24 15:05:48] 2025-07-24 13:05:17,107 | INFO     | ready for new job
[2025-07-24 15:05:48] 2025-07-24 13:05:17,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 15:05:48] 2025-07-24 13:05:17,108 | INFO     | ***************************************
[2025-07-24 15:05:48] 2025-07-24 13:05:17,108 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 15:05:48] 2025-07-24 13:05:17,108 | INFO     | ***************************************
[2025-07-24 15:05:48] 2025-07-24 13:05:17,108 | INFO     | 
[2025-07-24 15:05:48] 2025-07-24 13:05:17,108 | INFO     | architecture information:
[2025-07-24 15:05:48] 2025-07-24 13:05:17,108 | INFO     | executing command: cat /etc/os-release
[2025-07-24 15:05:48] 2025-07-24 13:05:17,117 | INFO     | cat /etc/os-release:
[2025-07-24 15:05:48] NAME="CentOS Linux"
[2025-07-24 15:05:48] VERSION="7 (Core)"
[2025-07-24 15:05:48] ID="centos"
[2025-07-24 15:05:48] ID_LIKE="rhel fedora"
[2025-07-24 15:05:48] VERSION_ID="7"
[2025-07-24 15:05:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 15:05:48] ANSI_COLOR="0;31"
[2025-07-24 15:05:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 15:05:48] HOME_URL="https://www.centos.org/"
[2025-07-24 15:05:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 15:05:48] 
[2025-07-24 15:05:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 15:05:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 15:05:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 15:05:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 15:05:48] 
[2025-07-24 15:05:48] 2025-07-24 13:05:17,117 | INFO     | ***************************************
[2025-07-24 15:05:48] 2025-07-24 13:05:17,620 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-24 15:05:48] 2025-07-24 13:05:17,632 | INFO     | sufficient remaining disk space (264340766720 B)
[2025-07-24 15:05:48] 2025-07-24 13:05:17,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 15:05:48] 2025-07-24 13:05:17,632 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 15:05:48] 2025-07-24 13:05:17,633 | INFO     | update_server=False
[2025-07-24 15:05:48] 2025-07-24 13:05:17,633 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 15:05:48] 2025-07-24 13:05:17,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:05:48] 2025-07-24 13:05:17,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:05:48] 2025-07-24 13:05:17,633 | INFO     | aborting loop
[2025-07-24 15:05:48] 2025-07-24 13:05:18,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 15:05:48] 2025-07-24 13:05:18,452 | INFO     | all payload control threads have been joined
[2025-07-24 15:05:48] 2025-07-24 13:05:18,529 | INFO     | all data control threads have been joined
[2025-07-24 15:05:48] 2025-07-24 13:05:18,638 | INFO     | [job] retrieve thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:18,639 | INFO     | [job] job monitor thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:18,639 | INFO     | [job] queue monitor thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:18,658 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:18,715 | INFO     | [payload] validate_post thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:19,234 | INFO     | all job control threads have been joined
[2025-07-24 15:05:48] 2025-07-24 13:05:19,458 | INFO     | [payload] control thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:19,535 | INFO     | [data] control thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:19,598 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:19,622 | INFO     | [data] copytool_in thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:19,780 | INFO     | [payload] failed_post thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:19,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:20,053 | INFO     | [job] validate thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:20,068 | INFO     | [data] copytool_out thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:20,120 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:20,240 | INFO     | [job] control thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:20,780 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 15:05:48] 2025-07-24 13:05:24,787 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 15:05:48] 2025-07-24 13:05:26,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140598384039744)>', '<ExcThread(monitor, started 140597759305472)>']
[2025-07-24 15:05:48] 2025-07-24 13:05:31,218 | INFO     | all workflow threads have been joined
[2025-07-24 15:05:48] 2025-07-24 13:05:31,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 15:05:48] 2025-07-24 13:05:31,219 | INFO     | traces error code: 0
[2025-07-24 15:05:48] 2025-07-24 13:05:31,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 15:05:48] 2025-07-24 13:05:48,004 | INFO     | PID=61803 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-24 15:05:48] 2025-07-24 13:05:48,004 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 15:05:48] 2025-07-24 13:05:48,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 15:05:48] 2025-07-24 13:05:48,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 15:05:48] 2025-07-24 13:05:48,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 15:05:48] 2025-07-24 13:05:48,005 | INFO     | [monitor] control thread has ended
[2025-07-24 15:05:48] 2025-07-24 13:05:48,048 [wrapper] ==== pilot stdout END ====
[2025-07-24 15:05:48] 2025-07-24 13:05:48,051 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 15:05:48] 2025-07-24 13:05:48,054 [wrapper] pilotpid: 61803
[2025-07-24 15:05:48] 2025-07-24 13:05:48,056 [wrapper] Pilot exit status: 0
[2025-07-24 15:05:48] 2025-07-24 13:05:48,064 [wrapper] pandaids: 6741883572
[2025-07-24 15:05:48] 2025-07-24 13:05:48,079 [wrapper] cleanup supervisor_pilot   82913 61804
[2025-07-24 15:05:48] 2025-07-24 13:05:48,082 [wrapper] Test setup, not cleaning
[2025-07-24 15:05:48] 2025-07-24 13:05:48,084 [wrapper] apfmon messages muted
[2025-07-24 15:05:48] 2025-07-24 13:05:48,087 [wrapper] ==== wrapper stdout END ====
[2025-07-24 15:05:48] 2025-07-24 13:05:48,089 [wrapper] ==== wrapper stderr END ====
[2025-07-24 15:05:48]  *** Error codes and diagnostics ***
[2025-07-24 15:05:48]     "exeErrorCode": 0,
[2025-07-24 15:05:48]     "exeErrorDiag": "",
[2025-07-24 15:05:48]     "pilotErrorCode": 0,
[2025-07-24 15:05:48]     "pilotErrorDiag": "",
[2025-07-24 15:05:48]  *** Listing of results directory ***
[2025-07-24 15:05:48] total 600992
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc    530466 Jul 23 09:44 pilot3.tar.gz
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc      5112 Jul 23 09:45 queuedata.json
[2025-07-24 15:05:48] -rwx------ 1 boinc boinc     36292 Jul 23 09:46 runpilot2-wrapper.sh
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc       100 Jul 24 13:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 15:05:48] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 13:06 run_atlas
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc       105 Jul 24 13:06 job.xml
[2025-07-24 15:05:48] -rw-r--r-- 2 boinc boinc 330266484 Jul 24 13:06 EVNT.45697470._000184.pool.root.1
[2025-07-24 15:05:48] -rw-r--r-- 2 boinc boinc    542904 Jul 24 13:06 input.tar.gz
[2025-07-24 15:05:48] -rw-r--r-- 2 boinc boinc     15095 Jul 24 13:06 start_atlas.sh
[2025-07-24 15:05:48] drwxrwx--x 2 boinc boinc      4096 Jul 24 13:06 shared
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc         0 Jul 24 13:06 boinc_setup_complete
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc      6448 Jul 24 13:06 init_data.xml
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc         0 Jul 24 13:06 boinc_lockfile
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc      2612 Jul 24 13:06 pandaJob.out
[2025-07-24 15:05:48] -rw------- 1 boinc boinc    978939 Jul 24 13:06 agis_schedconf.cvmfs.json
[2025-07-24 15:05:48] -rw------- 1 boinc boinc   1593041 Jul 24 13:06 agis_ddmendpoints.agis.ALL.json
[2025-07-24 15:05:48] drwx------ 4 boinc boinc      4096 Jul 24 13:07 pilot3
[2025-07-24 15:05:48] -rw------- 1 boinc boinc 279449835 Jul 24 15:04 HITS.45697472._004005.pool.root.1
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc       529 Jul 24 15:04 boinc_task_state.xml
[2025-07-24 15:05:48] -rw------- 1 boinc boinc      1014 Jul 24 15:05 memory_monitor_summary.json
[2025-07-24 15:05:48] -rw------- 1 boinc boinc    241102 Jul 24 15:05 log.45697472._004005.job.log.tgz.1
[2025-07-24 15:05:48] -rw------- 1 boinc boinc      7740 Jul 24 15:05 heartbeat.json
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc      8192 Jul 24 15:05 boinc_mmap_file
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc        27 Jul 24 15:05 wrapper_checkpoint.txt
[2025-07-24 15:05:48] -rw------- 1 boinc boinc       745 Jul 24 15:05 pilotlog.txt
[2025-07-24 15:05:48] -rw------- 1 boinc boinc        95 Jul 24 15:05 pilot_heartbeat.json
[2025-07-24 15:05:48] -rw------- 1 boinc boinc    669772 Jul 24 15:05 log.45697472._004005.job.log.1
[2025-07-24 15:05:48] -rw------- 1 boinc boinc       357 Jul 24 15:05 output.list
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc       620 Jul 24 15:05 runtime_log
[2025-07-24 15:05:48] -rw------- 1 boinc boinc    931840 Jul 24 15:05 result.tar.gz
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc      8739 Jul 24 15:05 runtime_log.err
[2025-07-24 15:05:48] -rw------- 1 boinc boinc       660 Jul 24 15:05 fp9NDmIMjy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWwvKDmng0tPn.diag
[2025-07-24 15:05:48] -rw-r--r-- 1 boinc boinc     21423 Jul 24 15:05 stderr.txt
[2025-07-24 15:05:48] HITS file was successfully produced:
[2025-07-24 15:05:48] -rw------- 1 boinc boinc 279449835 Jul 24 15:04 shared/HITS.pool.root.1
[2025-07-24 15:05:48]  *** Contents of shared directory: ***
[2025-07-24 15:05:48] total 596900
[2025-07-24 15:05:48] -rw-r--r-- 2 boinc boinc 330266484 Jul 24 13:06 ATLAS.root_0
[2025-07-24 15:05:48] -rw-r--r-- 2 boinc boinc    542904 Jul 24 13:06 input.tar.gz
[2025-07-24 15:05:48] -rw-r--r-- 2 boinc boinc     15095 Jul 24 13:06 start_atlas.sh
[2025-07-24 15:05:48] -rw------- 1 boinc boinc 279449835 Jul 24 15:04 HITS.pool.root.1
[2025-07-24 15:05:48] -rw------- 1 boinc boinc    931840 Jul 24 15:05 result.tar.gz
15:05:49 (58166): run_atlas exited; CPU time 20552.318920
15:05:49 (58166): called boinc_finish(0)

</stderr_txt>
]]>

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