Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:39:11 (2484523): wrapper (7.7.26015): starting
11:39:11 (2484523): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 11:39:11] Arguments: --nthreads 8
[2025-07-23 11:39:11] Threads: 8
[2025-07-23 11:39:11] Checking for CVMFS
[2025-07-23 11:39:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 11:39:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 11:39:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 11:39:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 11:39:11] 2.13.1.0 665382 2602 70092 148664 3 188 33168166 40960001 12566 16776704 0 36639420 99.999 96512 56872 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 11:39:11] CVMFS is ok
[2025-07-23 11:39:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 11:39:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 11:39:11] Further information can be found at the LHC@home message board.
[2025-07-23 11:39:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 11:39:11] Checking for apptainer binary...
[2025-07-23 11:39:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 11:39:11] Running /usr/bin/apptainer --version
[2025-07-23 11:39:11] apptainer version 1.4.1-1.el9
[2025-07-23 11:39:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 11:39:11] c-208-40.aglt2.org
[2025-07-23 11:39:11] apptainer works
[2025-07-23 11:39:11] Set ATHENA_PROC_NUMBER=8
[2025-07-23 11:39:11] Set ATHENA_CORE_NUMBER=8
[2025-07-23 11:39:11] Starting ATLAS job with PandaID=6741883539
[2025-07-23 11:39:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 12:57:27]  *** The last 200 lines of the pilot log: ***
[2025-07-23 12:57:27]  protocol_id=None
[2025-07-23 12:57:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 12:57:27]  replicas=None
[2025-07-23 12:57:27]  scope=mc23_13p6TeV
[2025-07-23 12:57:27]  status=None
[2025-07-23 12:57:27]  status_code=0
[2025-07-23 12:57:27]  storage_token=
[2025-07-23 12:57:27]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6741883539/log.45697472._003972.job.log.tgz.1
[2025-07-23 12:57:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/39/44/log.45697472._003972.job.log.tgz.1
[2025-07-23 12:57:27]  workdir=None
[2025-07-23 12:57:27] ]
[2025-07-23 12:57:27] 2025-07-23 16:56:48,572 | INFO     | transferring file log.45697472._003972.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6741883539/log.45697472._003972.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 12:57:27] 2025-07-23 16:56:48,572 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6741883539/log.45697472._003972.job.log.tgz.1 /tmp/boinchome/slots/7/log.45697472._003972.job
[2025-07-23 12:57:27] 2025-07-23 16:56:48,589 | INFO     | adding to output.list: log.45697472._003972.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/39/44/log.45697472._003972.job.log.tg
[2025-07-23 12:57:27] 2025-07-23 16:56:48,590 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 12:57:27] 2025-07-23 16:56:48,590 | INFO     | summary of transferred files:
[2025-07-23 12:57:27] 2025-07-23 16:56:48,590 | INFO     |  -- lfn=log.45697472._003972.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 12:57:27] 2025-07-23 16:56:48,591 | INFO     | stage-out finished correctly
[2025-07-23 12:57:27] 2025-07-23 16:56:48,647 | INFO     | monitor loop #340: job 0:6741883539 is in state 'finished'
[2025-07-23 12:57:27] 2025-07-23 16:56:48,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 12:57:27] 2025-07-23 16:56:48,960 | INFO     | PID=2488659 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-23 12:57:27] 2025-07-23 16:56:48,960 | INFO     | .. there are 15 such processes running
[2025-07-23 12:57:27] 2025-07-23 16:56:51,150 | INFO     | monitor loop #341: job 0:6741883539 is in state 'finished'
[2025-07-23 12:57:27] 2025-07-23 16:56:51,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 12:57:27] 2025-07-23 16:56:51,181 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 12:57:27] 2025-07-23 16:56:51,234 | INFO     | job 6741883539 has state=finished
[2025-07-23 12:57:27] 2025-07-23 16:56:51,234 | INFO     | preparing for final server update for job 6741883539 in state='finished'
[2025-07-23 12:57:27] 2025-07-23 16:56:51,235 | INFO     | this job has now completed (state=finished)
[2025-07-23 12:57:27] 2025-07-23 16:56:51,235 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 12:57:27] 2025-07-23 16:56:51,235 | INFO     | log transfer has been attempted: DONE
[2025-07-23 12:57:27] 2025-07-23 16:56:51,235 | INFO     | job 6741883539 has finished - writing final server update
[2025-07-23 12:57:27] 2025-07-23 16:56:51,235 | INFO     | total number of processed events: 400 (read)
[2025-07-23 12:57:27] 2025-07-23 16:56:51,236 | INFO     | executing command: lscpu
[2025-07-23 12:57:27] 2025-07-23 16:56:51,289 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 12:57:27] 2025-07-23 16:56:53,653 | INFO     | monitor loop #342: job 0:6741883539 is in state 'finished'
[2025-07-23 12:57:27] 2025-07-23 16:56:53,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,616 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 12:57:27] 2025-07-23 16:56:54,620 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3713.9147812500014
[2025-07-23 12:57:27] 2025-07-23 16:56:54,628 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6741883539/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,629 | INFO     | extracted standard info from prmon json
[2025-07-23 12:57:27] 2025-07-23 16:56:54,629 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 12:57:27] 2025-07-23 16:56:54,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 12:57:27] 2025-07-23 16:56:54,629 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 12:57:27] 2025-07-23 16:56:54,629 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | fitting pss+swap vs Time
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | sum of square deviations: 101843770.0
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | sum of deviations: -928482219.9999999
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | mean x: 1753287563.0
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | mean y: 2579603.4782608696
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | -- intersect: 15986830076.458881
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | intersect: 15986830076.458881
[2025-07-23 12:57:27] 2025-07-23 16:56:54,631 | INFO     | chi2: 0.0018081326986956897
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | -- intersect: 15986830076.458881
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | current memory leak: -9.12 B/s (using 69 data points, chi2=0.00)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | could have reported an average CPU frequency of 3738 MHz (6 samples)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | ..............................
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . Timing measurements:
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . get job = 0 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . initial setup = 2 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . payload setup = 5 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . stage-in = 0 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . payload execution = 4624 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . stage-out = 0 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | . log creation = 0 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,632 | INFO     | ..............................
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | 
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | job summary report
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | --------------------------------------------------
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | PanDA job id: 6741883539
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | task id: 45697472
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | errors: (none)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | pilot state: finished 
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | transexitcode: 0
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | exeerrorcode: 0
[2025-07-23 12:57:27] 2025-07-23 16:56:54,689 | INFO     | exeerrordiag: 
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | exitcode: 0
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | exitmsg: OK
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | cpuconsumptiontime: 35066 s
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | nevents: 400
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | neventsw: 0
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | pid: 2498704
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | pgrp: 2498704
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | corecount: 8
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | event service: False
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | sizes: {0: 2397312, 1: 2397511, 4: 2397773, 11: 2397801, 4633: 2424058, 4634: 2433056, 4636: 2433240, 4640: 2433434}
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | --------------------------------------------------
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | 
[2025-07-23 12:57:27] 2025-07-23 16:56:54,690 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | job 6741883539 has completed (purged errors)
[2025-07-23 12:57:27] 2025-07-23 16:56:54,710 | INFO     | overall cleanup function is called
[2025-07-23 12:57:27] 2025-07-23 16:56:55,718 | INFO     | --- collectZombieJob: --- 10, [2498704]
[2025-07-23 12:57:27] 2025-07-23 16:56:55,718 | INFO     | zombie collector waiting for pid 2498704
[2025-07-23 12:57:27] 2025-07-23 16:56:55,718 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 12:57:27] 2025-07-23 16:56:55,718 | INFO     | collected zombie processes
[2025-07-23 12:57:27] 2025-07-23 16:56:55,718 | INFO     | will attempt to kill all subprocesses of pid=2498704
[2025-07-23 12:57:27] 2025-07-23 16:56:56,046 | INFO     | process IDs to be killed: [2498704] (in reverse order)
[2025-07-23 12:57:27] 2025-07-23 16:56:56,158 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 12:57:27] 2025-07-23 16:56:56,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 12:57:27] 2025-07-23 16:56:56,173 | INFO     | did not find any defunct processes belonging to 2498704
[2025-07-23 12:57:27] 2025-07-23 16:56:56,184 | INFO     | did not find any defunct processes belonging to 2498704
[2025-07-23 12:57:27] 2025-07-23 16:56:56,184 | INFO     | ready for new job
[2025-07-23 12:57:27] 2025-07-23 16:56:56,184 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 12:57:27] 2025-07-23 16:56:56,185 | INFO     | ***************************************
[2025-07-23 12:57:27] 2025-07-23 16:56:56,185 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 12:57:27] 2025-07-23 16:56:56,185 | INFO     | ***************************************
[2025-07-23 12:57:27] 2025-07-23 16:56:56,185 | INFO     | 
[2025-07-23 12:57:27] 2025-07-23 16:56:56,190 | INFO     | architecture information:
[2025-07-23 12:57:27] 2025-07-23 16:56:56,190 | INFO     | executing command: cat /etc/os-release
[2025-07-23 12:57:27] 2025-07-23 16:56:56,206 | INFO     | cat /etc/os-release:
[2025-07-23 12:57:27] NAME="CentOS Linux"
[2025-07-23 12:57:27] VERSION="7 (Core)"
[2025-07-23 12:57:27] ID="centos"
[2025-07-23 12:57:27] ID_LIKE="rhel fedora"
[2025-07-23 12:57:27] VERSION_ID="7"
[2025-07-23 12:57:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 12:57:27] ANSI_COLOR="0;31"
[2025-07-23 12:57:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 12:57:27] HOME_URL="https://www.centos.org/"
[2025-07-23 12:57:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 12:57:27] 
[2025-07-23 12:57:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 12:57:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 12:57:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 12:57:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 12:57:27] 
[2025-07-23 12:57:27] 2025-07-23 16:56:56,206 | INFO     | ***************************************
[2025-07-23 12:57:27] 2025-07-23 16:56:56,709 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-07-23 12:57:27] 2025-07-23 16:56:56,720 | INFO     | sufficient remaining disk space (160516014080 B)
[2025-07-23 12:57:27] 2025-07-23 16:56:56,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 12:57:27] 2025-07-23 16:56:56,720 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 12:57:27] 2025-07-23 16:56:56,720 | INFO     | update_server=False
[2025-07-23 12:57:27] 2025-07-23 16:56:56,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 12:57:27] 2025-07-23 16:56:56,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 12:57:27] 2025-07-23 16:56:56,873 | INFO     | all data control threads have been joined
[2025-07-23 12:57:27] 2025-07-23 16:56:57,070 | INFO     | all job control threads have been joined
[2025-07-23 12:57:27] 2025-07-23 16:56:57,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 12:57:27] 2025-07-23 16:56:57,163 | INFO     | aborting loop
[2025-07-23 12:57:27] 2025-07-23 16:56:57,184 | INFO     | all payload control threads have been joined
[2025-07-23 12:57:27] 2025-07-23 16:56:57,241 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 12:57:27] 2025-07-23 16:56:57,726 | INFO     | [job] retrieve thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:57,874 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:57,878 | INFO     | [data] control thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:57,911 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,076 | INFO     | [job] control thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,168 | INFO     | [job] job monitor thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,181 | INFO     | [payload] validate_post thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,190 | INFO     | [payload] control thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,349 | INFO     | [payload] failed_post thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,464 | INFO     | [data] copytool_in thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:58,727 | INFO     | [data] copytool_out thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:59,022 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:59,102 | INFO     | [job] validate thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:56:59,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 12:57:27] 2025-07-23 16:57:00,706 | INFO     | [job] queue monitor thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:57:01,247 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:57:07,040 | INFO     | job.realtimelogging is not enabled
[2025-07-23 12:57:27] 2025-07-23 16:57:08,045 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 12:57:27] 2025-07-23 16:57:08,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264725194560)>', '<ExcThread(monitor, started 140264085640960)>']
[2025-07-23 12:57:27] 2025-07-23 16:57:13,876 | INFO     | all workflow threads have been joined
[2025-07-23 12:57:27] 2025-07-23 16:57:13,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 12:57:27] 2025-07-23 16:57:13,876 | INFO     | traces error code: 0
[2025-07-23 12:57:27] 2025-07-23 16:57:13,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 12:57:27] 2025-07-23 16:57:27,350 | INFO     | PID=2488659 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 12:57:27] 2025-07-23 16:57:27,350 | INFO     | .. there are 16 such processes running
[2025-07-23 12:57:27] 2025-07-23 16:57:27,351 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 12:57:27] 2025-07-23 16:57:27,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 12:57:27] 2025-07-23 16:57:27,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 12:57:27] 2025-07-23 16:57:27,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 12:57:27] 2025-07-23 16:57:27,351 | INFO     | [monitor] control thread has ended
[2025-07-23 12:57:27] 2025-07-23 16:57:27,447 [wrapper] ==== pilot stdout END ====
[2025-07-23 12:57:27] 2025-07-23 16:57:27,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 12:57:27] 2025-07-23 16:57:27,451 [wrapper] pilotpid: 2488659
[2025-07-23 12:57:27] 2025-07-23 16:57:27,453 [wrapper] Pilot exit status: 0
[2025-07-23 12:57:27] 2025-07-23 16:57:27,459 [wrapper] pandaids: 6741883539
[2025-07-23 12:57:27] 2025-07-23 16:57:27,537 [wrapper] cleanup supervisor_pilot 2888014 2488660
[2025-07-23 12:57:27] 2025-07-23 16:57:27,539 [wrapper] Test setup, not cleaning
[2025-07-23 12:57:27] 2025-07-23 16:57:27,541 [wrapper] apfmon messages muted
[2025-07-23 12:57:27] 2025-07-23 16:57:27,543 [wrapper] ==== wrapper stdout END ====
[2025-07-23 12:57:27] 2025-07-23 16:57:27,545 [wrapper] ==== wrapper stderr END ====
[2025-07-23 12:57:27]  *** Error codes and diagnostics ***
[2025-07-23 12:57:27]     "exeErrorCode": 0,
[2025-07-23 12:57:27]     "exeErrorDiag": "",
[2025-07-23 12:57:27]     "pilotErrorCode": 0,
[2025-07-23 12:57:27]     "pilotErrorDiag": "",
[2025-07-23 12:57:27]  *** Listing of results directory ***
[2025-07-23 12:57:27] total 613288
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 03:36 queuedata.json
[2025-07-23 12:57:27] -rwx------. 1 boincer umatlas     36292 Jul 23 03:38 runpilot2-wrapper.sh
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 03:38 pilot3.tar.gz
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas       100 Jul 23 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 12:57:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 11:39 run_atlas
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas       105 Jul 23 11:39 job.xml
[2025-07-23 12:57:27] -rw-r--r--. 2 boincer umatlas 336308212 Jul 23 11:39 EVNT.45697470._000182.pool.root.1
[2025-07-23 12:57:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 11:39 start_atlas.sh
[2025-07-23 12:57:27] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 11:39 shared
[2025-07-23 12:57:27] -rw-r--r--. 2 boincer umatlas    542896 Jul 23 11:39 input.tar.gz
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas         0 Jul 23 11:39 boinc_lockfile
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas      2611 Jul 23 11:39 pandaJob.out
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas    978487 Jul 23 11:39 agis_schedconf.cvmfs.json
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas   1593041 Jul 23 11:39 agis_ddmendpoints.agis.ALL.json
[2025-07-23 12:57:27] drwx------. 4 boincer umatlas      4096 Jul 23 11:39 pilot3
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas       529 Jul 23 12:56 boinc_task_state.xml
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas 286273189 Jul 23 12:56 HITS.45697472._003972.pool.root.1
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas      7172 Jul 23 12:56 init_data.xml
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas      1029 Jul 23 12:56 memory_monitor_summary.json
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas    317319 Jul 23 12:56 log.45697472._003972.job.log.tgz.1
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas      7768 Jul 23 12:56 heartbeat.json
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 12:57 boinc_mmap_file
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas        27 Jul 23 12:57 wrapper_checkpoint.txt
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas        95 Jul 23 12:57 pilot_heartbeat.json
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas       823 Jul 23 12:57 pilotlog.txt
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas    458184 Jul 23 12:57 log.45697472._003972.job.log.1
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas       357 Jul 23 12:57 output.list
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas       620 Jul 23 12:57 runtime_log
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas    798720 Jul 23 12:57 result.tar.gz
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas      8660 Jul 23 12:57 runtime_log.err
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas       651 Jul 23 12:57 4vbNDm9Ejy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2BLLDmqZbwtn.diag
[2025-07-23 12:57:27] -rw-r--r--. 1 boincer umatlas     21899 Jul 23 12:57 stderr.txt
[2025-07-23 12:57:27] HITS file was successfully produced:
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas 286273189 Jul 23 12:56 shared/HITS.pool.root.1
[2025-07-23 12:57:27]  *** Contents of shared directory: ***
[2025-07-23 12:57:27] total 609328
[2025-07-23 12:57:27] -rw-r--r--. 2 boincer umatlas 336308212 Jul 23 11:39 ATLAS.root_0
[2025-07-23 12:57:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 11:39 start_atlas.sh
[2025-07-23 12:57:27] -rw-r--r--. 2 boincer umatlas    542896 Jul 23 11:39 input.tar.gz
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas 286273189 Jul 23 12:56 HITS.pool.root.1
[2025-07-23 12:57:27] -rw-------. 1 boincer umatlas    798720 Jul 23 12:57 result.tar.gz
12:57:28 (2484523): run_atlas exited; CPU time 35175.543685
12:57:28 (2484523): called boinc_finish(0)

</stderr_txt>
]]>

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