Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:10:22 (1742461): wrapper (7.7.26015): starting
10:10:22 (1742461): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 10:10:22] Arguments: --nthreads 8
[2025-07-23 10:10:22] Threads: 8
[2025-07-23 10:10:22] Checking for CVMFS
[2025-07-23 10:10:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 10:10:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 10:10:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 10:10:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 10:10:23] 2.13.1.0 116762 2735 190480 148660 0 60 32999450 40960000 11289 16776704 0 35499668 99.999 96283 45330 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 10:10:23] CVMFS is ok
[2025-07-23 10:10:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 10:10:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 10:10:23] Further information can be found at the LHC@home message board.
[2025-07-23 10:10:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 10:10:23] Checking for apptainer binary...
[2025-07-23 10:10:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 10:10:23] Running /usr/bin/apptainer --version
[2025-07-23 10:10:23] apptainer version 1.4.1-1.el9
[2025-07-23 10:10:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 10:10:23] c-208-39.aglt2.org
[2025-07-23 10:10:23] apptainer works
[2025-07-23 10:10:23] Set ATHENA_PROC_NUMBER=8
[2025-07-23 10:10:23] Set ATHENA_CORE_NUMBER=8
[2025-07-23 10:10:23] Starting ATLAS job with PandaID=6741873970
[2025-07-23 10:10:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 11:21:29]  *** The last 200 lines of the pilot log: ***
[2025-07-23 11:21:29]  protocol_id=None
[2025-07-23 11:21:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 11:21:29]  replicas=None
[2025-07-23 11:21:29]  scope=mc23_13p6TeV
[2025-07-23 11:21:29]  status=None
[2025-07-23 11:21:29]  status_code=0
[2025-07-23 11:21:29]  storage_token=
[2025-07-23 11:21:29]  surl=/tmp/boinchome/slots/14/PanDA_Pilot-6741873970/log.45697472._003147.job.log.tgz.1
[2025-07-23 11:21:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/23/log.45697472._003147.job.log.tgz.1
[2025-07-23 11:21:29]  workdir=None
[2025-07-23 11:21:29] ]
[2025-07-23 11:21:29] 2025-07-23 15:20:41,420 | INFO     | transferring file log.45697472._003147.job.log.tgz.1 from /tmp/boinchome/slots/14/PanDA_Pilot-6741873970/log.45697472._003147.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-23 11:21:29] 2025-07-23 15:20:41,420 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/14/PanDA_Pilot-6741873970/log.45697472._003147.job.log.tgz.1 /tmp/boinchome/slots/14/log.45697472._003147.j
[2025-07-23 11:21:29] 2025-07-23 15:20:41,441 | INFO     | adding to output.list: log.45697472._003147.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/23/log.45697472._003147.job.log.tg
[2025-07-23 11:21:29] 2025-07-23 15:20:41,442 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 11:21:29] 2025-07-23 15:20:41,442 | INFO     | summary of transferred files:
[2025-07-23 11:21:29] 2025-07-23 15:20:41,442 | INFO     |  -- lfn=log.45697472._003147.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 11:21:29] 2025-07-23 15:20:41,442 | INFO     | stage-out finished correctly
[2025-07-23 11:21:29] 2025-07-23 15:20:43,094 | WARNING  | process 1763432 can no longer be monitored (due to stat problems) - aborting
[2025-07-23 11:21:29] 2025-07-23 15:20:43,095 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6741873970/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 11:21:29] 2025-07-23 15:20:43,444 | INFO     | number of running child processes to parent process 1763432: 1
[2025-07-23 11:21:29] 2025-07-23 15:20:43,445 | INFO     | maximum number of monitored processes: 6
[2025-07-23 11:21:29] 2025-07-23 15:20:44,440 | INFO     | PID=1746994 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-23 11:21:29] 2025-07-23 15:20:44,440 | INFO     | .. there are 16 such processes running
[2025-07-23 11:21:29] 2025-07-23 15:20:44,770 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 11:21:29] 2025-07-23 15:20:44,823 | INFO     | job 6741873970 has state=finished
[2025-07-23 11:21:29] 2025-07-23 15:20:44,823 | INFO     | preparing for final server update for job 6741873970 in state='finished'
[2025-07-23 11:21:29] 2025-07-23 15:20:44,823 | INFO     | this job has now completed (state=finished)
[2025-07-23 11:21:29] 2025-07-23 15:20:44,823 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 11:21:29] 2025-07-23 15:20:44,823 | INFO     | log transfer has been attempted: DONE
[2025-07-23 11:21:29] 2025-07-23 15:20:44,823 | INFO     | job 6741873970 has finished - writing final server update
[2025-07-23 11:21:29] 2025-07-23 15:20:44,824 | INFO     | total number of processed events: 400 (read)
[2025-07-23 11:21:29] 2025-07-23 15:20:44,825 | INFO     | executing command: lscpu
[2025-07-23 11:21:29] 2025-07-23 15:20:44,880 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 11:21:29] 2025-07-23 15:20:45,947 | INFO     | monitor loop #310: job 0:6741873970 is in state 'finished'
[2025-07-23 11:21:29] 2025-07-23 15:20:45,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,247 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 11:21:29] 2025-07-23 15:20:48,252 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3735.7503281250006
[2025-07-23 11:21:29] 2025-07-23 15:20:48,264 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6741873970/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,265 | INFO     | extracted standard info from prmon json
[2025-07-23 11:21:29] 2025-07-23 15:20:48,265 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 11:21:29] 2025-07-23 15:20:48,265 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 11:21:29] 2025-07-23 15:20:48,265 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 11:21:29] 2025-07-23 15:20:48,265 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 11:21:29] 2025-07-23 15:20:48,266 | INFO     | fitting pss+swap vs Time
[2025-07-23 11:21:29] 2025-07-23 15:20:48,266 | INFO     | sum of square deviations: 73882315.5
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | sum of deviations: 136690020.0
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | mean x: 1753282022.5
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | mean y: 2578403.5161290322
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | -- intersect: -3241176926.8262916
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | intersect: -3241176926.8262916
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | chi2: 0.0024549893021066985
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | -- intersect: -3241176926.8262916
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | current memory leak: 1.85 B/s (using 62 data points, chi2=0.00)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | could have reported an average CPU frequency of 3748 MHz (6 samples)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | ..............................
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | . Timing measurements:
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | . get job = 0 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | . initial setup = 2 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | . payload setup = 5 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,267 | INFO     | . stage-in = 0 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,268 | INFO     | . payload execution = 4185 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,268 | INFO     | . stage-out = 0 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,268 | INFO     | . log creation = 0 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,268 | INFO     | ..............................
[2025-07-23 11:21:29] 2025-07-23 15:20:48,323 | INFO     | 
[2025-07-23 11:21:29] 2025-07-23 15:20:48,323 | INFO     | job summary report
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | --------------------------------------------------
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | PanDA job id: 6741873970
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | task id: 45697472
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | errors: (none)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | pilot state: finished 
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | transexitcode: 0
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | exeerrorcode: 0
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | exeerrordiag: 
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | exitcode: 0
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | exitmsg: OK
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | cpuconsumptiontime: 31480 s
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | nevents: 400
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | neventsw: 0
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | pid: 1763432
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | pgrp: 1763432
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | corecount: 8
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | event service: False
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | sizes: {0: 2397313, 1: 2397512, 4: 2397774, 11: 2397802, 4194: 2423824, 4195: 2432824, 4198: 2433008, 4201: 2433202}
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | --------------------------------------------------
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | 
[2025-07-23 11:21:29] 2025-07-23 15:20:48,324 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-07-23 11:21:29] 2025-07-23 15:20:48,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,340 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 11:21:29] 2025-07-23 15:20:48,341 | INFO     | job 6741873970 has completed (purged errors)
[2025-07-23 11:21:29] 2025-07-23 15:20:48,341 | INFO     | overall cleanup function is called
[2025-07-23 11:21:29] 2025-07-23 15:20:49,348 | INFO     | --- collectZombieJob: --- 10, [1763432]
[2025-07-23 11:21:29] 2025-07-23 15:20:49,348 | INFO     | zombie collector waiting for pid 1763432
[2025-07-23 11:21:29] 2025-07-23 15:20:49,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 11:21:29] 2025-07-23 15:20:49,348 | INFO     | collected zombie processes
[2025-07-23 11:21:29] 2025-07-23 15:20:49,348 | INFO     | will attempt to kill all subprocesses of pid=1763432
[2025-07-23 11:21:29] 2025-07-23 15:20:49,681 | INFO     | process IDs to be killed: [1763432] (in reverse order)
[2025-07-23 11:21:29] 2025-07-23 15:20:49,796 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 11:21:29] 2025-07-23 15:20:49,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 11:21:29] 2025-07-23 15:20:49,811 | INFO     | did not find any defunct processes belonging to 1763432
[2025-07-23 11:21:29] 2025-07-23 15:20:49,822 | INFO     | did not find any defunct processes belonging to 1763432
[2025-07-23 11:21:29] 2025-07-23 15:20:49,822 | INFO     | ready for new job
[2025-07-23 11:21:29] 2025-07-23 15:20:49,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 11:21:29] 2025-07-23 15:20:49,823 | INFO     | ***************************************
[2025-07-23 11:21:29] 2025-07-23 15:20:49,823 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 11:21:29] 2025-07-23 15:20:49,823 | INFO     | ***************************************
[2025-07-23 11:21:29] 2025-07-23 15:20:49,823 | INFO     | 
[2025-07-23 11:21:29] 2025-07-23 15:20:49,828 | INFO     | architecture information:
[2025-07-23 11:21:29] 2025-07-23 15:20:49,828 | INFO     | executing command: cat /etc/os-release
[2025-07-23 11:21:29] 2025-07-23 15:20:49,839 | INFO     | cat /etc/os-release:
[2025-07-23 11:21:29] NAME="CentOS Linux"
[2025-07-23 11:21:29] VERSION="7 (Core)"
[2025-07-23 11:21:29] ID="centos"
[2025-07-23 11:21:29] ID_LIKE="rhel fedora"
[2025-07-23 11:21:29] VERSION_ID="7"
[2025-07-23 11:21:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 11:21:29] ANSI_COLOR="0;31"
[2025-07-23 11:21:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 11:21:29] HOME_URL="https://www.centos.org/"
[2025-07-23 11:21:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 11:21:29] 
[2025-07-23 11:21:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 11:21:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 11:21:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 11:21:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 11:21:29] 
[2025-07-23 11:21:29] 2025-07-23 15:20:49,839 | INFO     | ***************************************
[2025-07-23 11:21:29] 2025-07-23 15:20:50,340 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | INFO     | sufficient remaining disk space (159798788096 B)
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | INFO     | update_server=False
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 11:21:29] 2025-07-23 15:20:50,352 | INFO     | aborting loop
[2025-07-23 11:21:29] 2025-07-23 15:20:50,420 | INFO     | all job control threads have been joined
[2025-07-23 11:21:29] 2025-07-23 15:20:50,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 11:21:29] 2025-07-23 15:20:51,038 | INFO     | all data control threads have been joined
[2025-07-23 11:21:29] 2025-07-23 15:20:51,357 | INFO     | [job] retrieve thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:51,358 | INFO     | [job] job monitor thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:51,425 | INFO     | [job] control thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:51,536 | INFO     | [payload] validate_post thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:51,726 | INFO     | all payload control threads have been joined
[2025-07-23 11:21:29] 2025-07-23 15:20:51,788 | INFO     | [data] copytool_in thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,041 | INFO     | [data] control thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,050 | INFO     | [payload] failed_post thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,358 | INFO     | [data] copytool_out thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,399 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,446 | INFO     | [job] validate thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,493 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,556 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:52,728 | INFO     | [payload] control thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:53,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 11:21:29] 2025-07-23 15:20:54,334 | INFO     | [job] queue monitor thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:20:54,837 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:21:00,684 | INFO     | job.realtimelogging is not enabled
[2025-07-23 11:21:29] 2025-07-23 15:21:01,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 11:21:29] 2025-07-23 15:21:03,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872898074432)>', '<ExcThread(monitor, started 139872547350272)>']
[2025-07-23 11:21:29] 2025-07-23 15:21:08,182 | INFO     | all workflow threads have been joined
[2025-07-23 11:21:29] 2025-07-23 15:21:08,182 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 11:21:29] 2025-07-23 15:21:08,183 | INFO     | traces error code: 0
[2025-07-23 11:21:29] 2025-07-23 15:21:08,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 11:21:29] 2025-07-23 15:21:20,952 | INFO     | PID=1746994 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 11:21:29] 2025-07-23 15:21:20,953 | INFO     | .. there are 16 such processes running
[2025-07-23 11:21:29] 2025-07-23 15:21:20,954 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 11:21:29] 2025-07-23 15:21:20,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 11:21:29] 2025-07-23 15:21:20,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 11:21:29] 2025-07-23 15:21:20,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 11:21:29] 2025-07-23 15:21:20,954 | INFO     | [monitor] control thread has ended
[2025-07-23 11:21:29] 2025-07-23 15:21:21,036 [wrapper] ==== pilot stdout END ====
[2025-07-23 11:21:29] 2025-07-23 15:21:21,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 11:21:29] 2025-07-23 15:21:21,040 [wrapper] pilotpid: 1746994
[2025-07-23 11:21:29] 2025-07-23 15:21:21,042 [wrapper] Pilot exit status: 0
[2025-07-23 11:21:29] 2025-07-23 15:21:21,053 [wrapper] pandaids: 6741873970
[2025-07-23 11:21:29] 2025-07-23 15:21:21,141 [wrapper] cleanup supervisor_pilot 2038914 1746995
[2025-07-23 11:21:29] 2025-07-23 15:21:21,145 [wrapper] Test setup, not cleaning
[2025-07-23 11:21:29] 2025-07-23 15:21:21,148 [wrapper] apfmon messages muted
[2025-07-23 11:21:29] 2025-07-23 15:21:21,151 [wrapper] ==== wrapper stdout END ====
[2025-07-23 11:21:29] 2025-07-23 15:21:21,154 [wrapper] ==== wrapper stderr END ====
[2025-07-23 11:21:29]  *** Error codes and diagnostics ***
[2025-07-23 11:21:29]     "exeErrorCode": 0,
[2025-07-23 11:21:29]     "exeErrorDiag": "",
[2025-07-23 11:21:29]     "pilotErrorCode": 0,
[2025-07-23 11:21:29]     "pilotErrorDiag": "",
[2025-07-23 11:21:29]  *** Listing of results directory ***
[2025-07-23 11:21:29] total 600016
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 02:11 queuedata.json
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 02:14 pilot3.tar.gz
[2025-07-23 11:21:29] -rwx------. 1 boincer umatlas     36292 Jul 23 02:14 runpilot2-wrapper.sh
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas       100 Jul 23 10:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 11:21:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 10:10 run_atlas
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas       105 Jul 23 10:10 job.xml
[2025-07-23 11:21:29] -rw-r--r--. 2 boincer umatlas 329985900 Jul 23 10:10 EVNT.45697470._000149.pool.root.1
[2025-07-23 11:21:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 10:10 start_atlas.sh
[2025-07-23 11:21:29] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 10:10 shared
[2025-07-23 11:21:29] -rw-r--r--. 2 boincer umatlas    542906 Jul 23 10:10 input.tar.gz
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas         0 Jul 23 10:10 boinc_lockfile
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas      2611 Jul 23 10:10 pandaJob.out
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas    978503 Jul 23 10:10 agis_schedconf.cvmfs.json
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas   1593041 Jul 23 10:10 agis_ddmendpoints.agis.ALL.json
[2025-07-23 11:21:29] drwx------. 4 boincer umatlas      4096 Jul 23 10:10 pilot3
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas 279084545 Jul 23 11:20 HITS.45697472._003147.pool.root.1
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas       529 Jul 23 11:20 boinc_task_state.xml
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas      7174 Jul 23 11:20 init_data.xml
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas      1043 Jul 23 11:20 memory_monitor_summary.json
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas    312104 Jul 23 11:20 log.45697472._003147.job.log.tgz.1
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas      7761 Jul 23 11:20 heartbeat.json
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas       823 Jul 23 11:21 pilotlog.txt
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas        95 Jul 23 11:21 pilot_heartbeat.json
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas    422303 Jul 23 11:21 log.45697472._003147.job.log.1
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas       357 Jul 23 11:21 output.list
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas       620 Jul 23 11:21 runtime_log
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas    757760 Jul 23 11:21 result.tar.gz
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas       652 Jul 23 11:21 wxMODmUvhy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmP1KLDmalG9cm.diag
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas      8674 Jul 23 11:21 runtime_log.err
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas        27 Jul 23 11:21 wrapper_checkpoint.txt
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 11:21 boinc_mmap_file
[2025-07-23 11:21:29] -rw-r--r--. 1 boincer umatlas     21905 Jul 23 11:21 stderr.txt
[2025-07-23 11:21:29] HITS file was successfully produced:
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas 279084545 Jul 23 11:20 shared/HITS.pool.root.1
[2025-07-23 11:21:29]  *** Contents of shared directory: ***
[2025-07-23 11:21:29] total 596092
[2025-07-23 11:21:29] -rw-r--r--. 2 boincer umatlas 329985900 Jul 23 10:10 ATLAS.root_0
[2025-07-23 11:21:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 10:10 start_atlas.sh
[2025-07-23 11:21:29] -rw-r--r--. 2 boincer umatlas    542906 Jul 23 10:10 input.tar.gz
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas 279084545 Jul 23 11:20 HITS.pool.root.1
[2025-07-23 11:21:29] -rw-------. 1 boincer umatlas    757760 Jul 23 11:21 result.tar.gz
11:21:31 (1742461): run_atlas exited; CPU time 31566.500613
11:21:31 (1742461): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN