Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:40 (273905): wrapper (7.7.26015): starting
06:49:40 (273905): wrapper: running run_atlas (--nthreads 12)
[2025-07-23 06:49:40] Arguments: --nthreads 12
[2025-07-23 06:49:40] Threads: 12
[2025-07-23 06:49:40] Checking for CVMFS
[2025-07-23 06:49:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 06:49:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 06:49:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 06:49:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 06:49:41] 2.11.5.0 11050 19684 241660 148659 0 270 37784834 45568000 16472 130560 0 123200589 99.714 99380367 27748 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-23 06:49:41] CVMFS is ok
[2025-07-23 06:49:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 06:49:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 06:49:41] Further information can be found at the LHC@home message board.
[2025-07-23 06:49:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 06:49:41] Checking for apptainer binary...
[2025-07-23 06:49:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 06:49:41] Running /usr/bin/apptainer --version
[2025-07-23 06:49:41] apptainer version 1.4.1-1.el9
[2025-07-23 06:49:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 06:49:41] wns0033.triumf.lcg
[2025-07-23 06:49:41] apptainer works
[2025-07-23 06:49:41] Set ATHENA_PROC_NUMBER=12
[2025-07-23 06:49:41] Set ATHENA_CORE_NUMBER=12
[2025-07-23 06:49:41] Starting ATLAS job with PandaID=6741891504
[2025-07-23 06:49:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 06:53:28]  *** The last 200 lines of the pilot log: ***
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | INFO     | will not add max space = 0 B to job metrics
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | wrong length of table data, x=[1753278628.0], y=[2038.0] (must be same and length>=4)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | could have reported an average CPU frequency of 2468 MHz (4 samples)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | ..............................
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . Timing measurements:
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . get job = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . initial setup = 8 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . payload setup = 6 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . stage-in = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . payload execution = 24 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . stage-out = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . log creation = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | ..............................
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741891504/pilotlog.txt
[2025-07-23 06:53:28] 2025-07-23 13:52:54,788 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-23 06:53:28] - Log from pilotlog.txt -
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | found no stored workdir sizes
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | INFO     | will not add max space = 0 B to job metrics
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | wrong length of table data, x=[1753278628.0], y=[2038.0] (must be same and length>=4)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | could have reported an average CPU frequency of 2468 MHz (4 samples)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | ..............................
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . Timing measurements:
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . get job = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . initial setup = 8 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . payload setup = 6 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . stage-in = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . payload execution = 24 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . stage-out = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . log creation = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | ..............................
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741891504/pilotlog.txt
[2025-07-23 06:53:28] 2025-07-23 13:52:54,788 | WARNING  | 
[2025-07-23 06:53:28] [begin log extracts]
[2025-07-23 06:53:28] - Log from pilotlog.txt -
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | found no stored workdir sizes
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | INFO     | will not add max space = 0 B to job metrics
[2025-07-23 06:53:28] 2025-07-23 13:52:54,773 | WARNING  | wrong length of table data, x=[1753278628.0], y=[2038.0] (must be same and length>=4)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | could have reported an average CPU frequency of 2468 MHz (4 samples)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | ..............................
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . Timing measurements:
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . get job = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . initial setup = 8 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . payload setup = 6 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . stage-in = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . payload execution = 24 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . stage-out = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | . log creation = 0 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | ..............................
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-23 06:53:28] 2025-07-23 13:52:54,774 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741891504/pilotlog.txt
[2025-07-23 06:53:28] [end log extracts]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,789 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,789 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-23 06:53:28] 2025-07-23 13:52:54,846 | INFO     | 
[2025-07-23 06:53:28] 2025-07-23 13:52:54,846 | INFO     | job summary report
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | --------------------------------------------------
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | PanDA job id: 6741891504
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | task id: 45697490
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-23 06:50:40,522 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | pilot state: failed 
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | transexitcode: 65
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | exeerrorcode: 65
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | exitcode: 65
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | cpuconsumptiontime: 16 s
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | nevents: 0
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | neventsw: 0
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | pid: 284029
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | pgrp: 284029
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | corecount: 12
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | event service: False
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | sizes: {0: 2397501, 1: 2397529, 5: 2397791, 11: 2397847, 35: 2421170, 36: 2425462, 39: 2425618, 160: 2425784}
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | --------------------------------------------------
[2025-07-23 06:53:28] 2025-07-23 13:52:54,847 | INFO     | 
[2025-07-23 06:53:28] 2025-07-23 13:52:54,848 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,879 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | job 6741891504 has completed (purged errors)
[2025-07-23 06:53:28] 2025-07-23 13:52:54,880 | INFO     | overall cleanup function is called
[2025-07-23 06:53:28] 2025-07-23 13:52:55,887 | INFO     | --- collectZombieJob: --- 10, [284029]
[2025-07-23 06:53:28] 2025-07-23 13:52:55,887 | INFO     | zombie collector waiting for pid 284029
[2025-07-23 06:53:28] 2025-07-23 13:52:55,887 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 06:53:28] 2025-07-23 13:52:55,887 | INFO     | collected zombie processes
[2025-07-23 06:53:28] 2025-07-23 13:52:55,887 | INFO     | will attempt to kill all subprocesses of pid=284029
[2025-07-23 06:53:28] 2025-07-23 13:52:55,977 | INFO     | PID=277475 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 06:53:28] 2025-07-23 13:52:55,977 | INFO     | .. there are 21 such processes running
[2025-07-23 06:53:28] 2025-07-23 13:52:56,433 | INFO     | process IDs to be killed: [284029] (in reverse order)
[2025-07-23 06:53:28] 2025-07-23 13:52:56,547 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 06:53:28] 2025-07-23 13:52:56,550 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 06:53:28] 2025-07-23 13:52:56,560 | INFO     | did not find any defunct processes belonging to 284029
[2025-07-23 06:53:28] 2025-07-23 13:52:56,591 | INFO     | did not find any defunct processes belonging to 284029
[2025-07-23 06:53:28] 2025-07-23 13:52:56,591 | INFO     | ready for new job
[2025-07-23 06:53:28] 2025-07-23 13:52:56,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 06:53:28] 2025-07-23 13:52:56,592 | INFO     | ***************************************
[2025-07-23 06:53:28] 2025-07-23 13:52:56,592 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 06:53:28] 2025-07-23 13:52:56,592 | INFO     | ***************************************
[2025-07-23 06:53:28] 2025-07-23 13:52:56,592 | INFO     | 
[2025-07-23 06:53:28] 2025-07-23 13:52:56,600 | INFO     | architecture information:
[2025-07-23 06:53:28] 2025-07-23 13:52:56,604 | INFO     | executing command: cat /etc/os-release
[2025-07-23 06:53:28] 2025-07-23 13:52:56,618 | INFO     | cat /etc/os-release:
[2025-07-23 06:53:28] NAME="CentOS Linux"
[2025-07-23 06:53:28] VERSION="7 (Core)"
[2025-07-23 06:53:28] ID="centos"
[2025-07-23 06:53:28] ID_LIKE="rhel fedora"
[2025-07-23 06:53:28] VERSION_ID="7"
[2025-07-23 06:53:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 06:53:28] ANSI_COLOR="0;31"
[2025-07-23 06:53:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 06:53:28] HOME_URL="https://www.centos.org/"
[2025-07-23 06:53:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 06:53:28] 
[2025-07-23 06:53:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 06:53:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 06:53:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 06:53:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 06:53:28] 
[2025-07-23 06:53:28] 2025-07-23 13:52:56,618 | INFO     | ***************************************
[2025-07-23 06:53:28] 2025-07-23 13:52:57,122 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-23 06:53:28] 2025-07-23 13:52:57,189 | INFO     | sufficient remaining disk space (1952306954240 B)
[2025-07-23 06:53:28] 2025-07-23 13:52:57,190 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 06:53:28] 2025-07-23 13:52:57,190 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 06:53:28] 2025-07-23 13:52:57,190 | INFO     | update_server=False
[2025-07-23 06:53:28] 2025-07-23 13:52:57,190 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 06:53:28] 2025-07-23 13:52:57,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 06:53:28] 2025-07-23 13:52:57,286 | INFO     | all payload control threads have been joined
[2025-07-23 06:53:28] 2025-07-23 13:52:57,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 06:53:28] 2025-07-23 13:52:57,447 | INFO     | aborting loop
[2025-07-23 06:53:28] 2025-07-23 13:52:57,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 06:53:28] 2025-07-23 13:52:58,196 | INFO     | [job] retrieve thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,292 | INFO     | [payload] control thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,293 | INFO     | all data control threads have been joined
[2025-07-23 06:53:28] 2025-07-23 13:52:58,436 | INFO     | [job] validate thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,453 | INFO     | [job] job monitor thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,607 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,863 | INFO     | [payload] validate_post thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:58,900 | INFO     | all job control threads have been joined
[2025-07-23 06:53:28] 2025-07-23 13:52:58,901 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:59,003 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:59,017 | INFO     | [data] copytool_in thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:59,198 | INFO     | [data] copytool_out thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:59,299 | INFO     | [data] control thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:59,730 | INFO     | [payload] failed_post thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:52:59,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 06:53:28] 2025-07-23 13:52:59,905 | INFO     | [job] control thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:53:00,871 | INFO     | [job] queue monitor thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:53:01,607 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 06:53:28] 2025-07-23 13:53:02,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348602578752)>', '<ExcThread(monitor, started 140348273690368)>']
[2025-07-23 06:53:28] 2025-07-23 13:53:07,429 | INFO     | all workflow threads have been joined
[2025-07-23 06:53:28] 2025-07-23 13:53:07,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 06:53:28] 2025-07-23 13:53:07,429 | INFO     | traces error code: 0
[2025-07-23 06:53:28] 2025-07-23 13:53:07,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 06:53:28] 2025-07-23 13:53:28,377 | INFO     | PID=277475 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 06:53:28] 2025-07-23 13:53:28,377 | INFO     | .. there are 21 such processes running
[2025-07-23 06:53:28] 2025-07-23 13:53:28,377 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 06:53:28] 2025-07-23 13:53:28,377 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 06:53:28] 2025-07-23 13:53:28,377 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 06:53:28] 2025-07-23 13:53:28,377 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 06:53:28] 2025-07-23 13:53:28,378 | CRITICAL | thread 'MainThread' is not alive
[2025-07-23 06:53:28] 2025-07-23 13:53:28,378 | INFO     | [monitor] control thread has ended
[2025-07-23 06:53:28] 2025-07-23 13:53:28,502 [wrapper] ==== pilot stdout END ====
[2025-07-23 06:53:28] 2025-07-23 13:53:28,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 06:53:28] 2025-07-23 13:53:28,506 [wrapper] pilotpid: 277475
[2025-07-23 06:53:28] 2025-07-23 13:53:28,508 [wrapper] Pilot exit status: 0
[2025-07-23 06:53:28] 2025-07-23 13:53:28,516 [wrapper] pandaids: 6741891504
[2025-07-23 06:53:28] 2025-07-23 13:53:28,556 [wrapper] cleanup supervisor_pilot  277481 277476
[2025-07-23 06:53:28] 2025-07-23 13:53:28,558 [wrapper] Test setup, not cleaning
[2025-07-23 06:53:28] 2025-07-23 13:53:28,560 [wrapper] apfmon messages muted
[2025-07-23 06:53:28] 2025-07-23 13:53:28,562 [wrapper] ==== wrapper stdout END ====
[2025-07-23 06:53:28] 2025-07-23 13:53:28,564 [wrapper] ==== wrapper stderr END ====
[2025-07-23 06:53:28]  *** Error codes and diagnostics ***
[2025-07-23 06:53:28]     "exeErrorCode": 65,
[2025-07-23 06:53:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-23 06:53:28]     "pilotErrorCode": 1305,
[2025-07-23 06:53:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-23 06:53:28]  *** Listing of results directory ***
[2025-07-23 06:53:28] total 343536
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc    530466 Jul 23 02:49 pilot3.tar.gz
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc      5112 Jul 23 03:00 queuedata.json
[2025-07-23 06:53:28] -rwx------. 1 boinc boinc     36292 Jul 23 03:02 runpilot2-wrapper.sh
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc       100 Jul 23 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 06:53:28] -rwxr-xr-x. 1 boinc boinc      7986 Jul 23 06:49 run_atlas
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc       105 Jul 23 06:49 job.xml
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc      6595 Jul 23 06:49 init_data.xml
[2025-07-23 06:53:28] -rw-r--r--. 2 boinc boinc 347718230 Jul 23 06:49 EVNT.45697488._000229.pool.root.1
[2025-07-23 06:53:28] -rw-r--r--. 2 boinc boinc    542907 Jul 23 06:49 input.tar.gz
[2025-07-23 06:53:28] -rw-r--r--. 2 boinc boinc     15095 Jul 23 06:49 start_atlas.sh
[2025-07-23 06:53:28] drwxrwx--x. 2 boinc boinc      4096 Jul 23 06:49 shared
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc         0 Jul 23 06:49 boinc_lockfile
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc      2590 Jul 23 06:49 pandaJob.out
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc    978503 Jul 23 06:49 agis_schedconf.cvmfs.json
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc   1593041 Jul 23 06:49 agis_ddmendpoints.agis.ALL.json
[2025-07-23 06:53:28] drwx------. 4 boinc boinc      4096 Jul 23 06:49 pilot3
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc       522 Jul 23 06:50 boinc_task_state.xml
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc       962 Jul 23 06:50 memory_monitor_summary.json
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc     21149 Jul 23 06:50 log.45697490._005198.job.log.tgz.1
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc        95 Jul 23 06:52 pilot_heartbeat.json
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc      8386 Jul 23 06:52 heartbeat.json
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc      8192 Jul 23 06:53 boinc_mmap_file
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc       892 Jul 23 06:53 pilotlog.txt
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc        22 Jul 23 06:53 wrapper_checkpoint.txt
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc     76663 Jul 23 06:53 log.45697490._005198.job.log.1
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc       188 Jul 23 06:53 output.list
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc       620 Jul 23 06:53 runtime_log
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc    112640 Jul 23 06:53 result.tar.gz
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc      8485 Jul 23 06:53 runtime_log.err
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc       644 Jul 23 06:53 m9MODmsTly7n9Rq4apOajLDm4fhM0noT9bVof3QYDmw4vKDmZ6wFdn.diag
[2025-07-23 06:53:28] -rw-r--r--. 1 boinc boinc     21763 Jul 23 06:53 stderr.txt
[2025-07-23 06:53:28] No HITS result produced
[2025-07-23 06:53:28]  *** Contents of shared directory: ***
[2025-07-23 06:53:28] total 340232
[2025-07-23 06:53:28] -rw-r--r--. 2 boinc boinc 347718230 Jul 23 06:49 ATLAS.root_0
[2025-07-23 06:53:28] -rw-r--r--. 2 boinc boinc    542907 Jul 23 06:49 input.tar.gz
[2025-07-23 06:53:28] -rw-r--r--. 2 boinc boinc     15095 Jul 23 06:49 start_atlas.sh
[2025-07-23 06:53:28] -rw-------. 1 boinc boinc    112640 Jul 23 06:53 result.tar.gz
06:53:30 (273905): run_atlas exited; CPU time 21.060228
06:53:30 (273905): called boinc_finish(0)

</stderr_txt>
]]>

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