Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:37:49 (260940): wrapper (7.7.26015): starting
07:37:49 (260940): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 07:37:49] Arguments: --nthreads 8
[2025-07-23 07:37:49] Threads: 8
[2025-07-23 07:37:49] Checking for CVMFS
[2025-07-23 07:37:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 07:37:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 07:37:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 07:37:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 07:37:49] 2.13.1.0 4026694 2363 78212 148657 1 188 39877936 40960001 10555 16776704 0 33015224 99.999 84411 52691 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 07:37:49] CVMFS is ok
[2025-07-23 07:37:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 07:37:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 07:37:49] Further information can be found at the LHC@home message board.
[2025-07-23 07:37:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 07:37:49] Checking for apptainer binary...
[2025-07-23 07:37:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 07:37:49] Running /usr/bin/apptainer --version
[2025-07-23 07:37:49] apptainer version 1.4.1-1.el9
[2025-07-23 07:37:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 07:37:49] c-208-38.aglt2.org
[2025-07-23 07:37:49] apptainer works
[2025-07-23 07:37:49] Set ATHENA_PROC_NUMBER=8
[2025-07-23 07:37:49] Set ATHENA_CORE_NUMBER=8
[2025-07-23 07:37:49] Starting ATLAS job with PandaID=6743009380
[2025-07-23 07:37:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 08:53:30]  *** The last 200 lines of the pilot log: ***
[2025-07-23 08:53:30]  lfn=log.45697541._005451.job.log.tgz.1
[2025-07-23 08:53:30]  mtime=0
[2025-07-23 08:53:30]  protocol_id=None
[2025-07-23 08:53:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 08:53:30]  replicas=None
[2025-07-23 08:53:30]  scope=mc23_13p6TeV
[2025-07-23 08:53:30]  status=None
[2025-07-23 08:53:30]  status_code=0
[2025-07-23 08:53:30]  storage_token=
[2025-07-23 08:53:30]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6743009380/log.45697541._005451.job.log.tgz.1
[2025-07-23 08:53:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/be/log.45697541._005451.job.log.tgz.1
[2025-07-23 08:53:30]  workdir=None
[2025-07-23 08:53:30] ]
[2025-07-23 08:53:30] 2025-07-23 12:52:52,017 | INFO     | transferring file log.45697541._005451.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6743009380/log.45697541._005451.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 08:53:30] 2025-07-23 12:52:52,017 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6743009380/log.45697541._005451.job.log.tgz.1 /tmp/boinchome/slots/5/log.45697541._005451.job
[2025-07-23 08:53:30] 2025-07-23 12:52:52,037 | INFO     | adding to output.list: log.45697541._005451.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/be/log.45697541._005451.job.log.tg
[2025-07-23 08:53:30] 2025-07-23 12:52:52,037 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 08:53:30] 2025-07-23 12:52:52,037 | INFO     | summary of transferred files:
[2025-07-23 08:53:30] 2025-07-23 12:52:52,037 | INFO     |  -- lfn=log.45697541._005451.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 08:53:30] 2025-07-23 12:52:52,037 | INFO     | stage-out finished correctly
[2025-07-23 08:53:30] 2025-07-23 12:52:53,529 | INFO     | monitor loop #331: job 0:6743009380 is in state 'finished'
[2025-07-23 08:53:30] 2025-07-23 12:52:53,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:53:30] 2025-07-23 12:52:54,226 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 08:53:30] 2025-07-23 12:52:54,279 | INFO     | job 6743009380 has state=finished
[2025-07-23 08:53:30] 2025-07-23 12:52:54,279 | INFO     | preparing for final server update for job 6743009380 in state='finished'
[2025-07-23 08:53:30] 2025-07-23 12:52:54,280 | INFO     | this job has now completed (state=finished)
[2025-07-23 08:53:30] 2025-07-23 12:52:54,280 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 08:53:30] 2025-07-23 12:52:54,280 | INFO     | log transfer has been attempted: DONE
[2025-07-23 08:53:30] 2025-07-23 12:52:54,280 | INFO     | job 6743009380 has finished - writing final server update
[2025-07-23 08:53:30] 2025-07-23 12:52:54,280 | INFO     | total number of processed events: 400 (read)
[2025-07-23 08:53:30] 2025-07-23 12:52:54,281 | INFO     | executing command: lscpu
[2025-07-23 08:53:30] 2025-07-23 12:52:54,333 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 08:53:30] 2025-07-23 12:52:55,252 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-07-23 08:53:30] 2025-07-23 12:52:56,032 | INFO     | monitor loop #332: job 0:6743009380 is in state 'finished'
[2025-07-23 08:53:30] 2025-07-23 12:52:56,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,452 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 08:53:30] 2025-07-23 12:52:57,457 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3743.9914375
[2025-07-23 08:53:30] 2025-07-23 12:52:57,470 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6743009380/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,471 | INFO     | extracted standard info from prmon json
[2025-07-23 08:53:30] 2025-07-23 12:52:57,471 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 08:53:30] 2025-07-23 12:52:57,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 08:53:30] 2025-07-23 12:52:57,471 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 08:53:30] 2025-07-23 12:52:57,471 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 08:53:30] 2025-07-23 12:52:57,472 | INFO     | fitting pss+swap vs Time
[2025-07-23 08:53:30] 2025-07-23 12:52:57,472 | INFO     | sum of square deviations: 93240818.0
[2025-07-23 08:53:30] 2025-07-23 12:52:57,472 | INFO     | sum of deviations: -636649069.9999999
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | mean x: 1753273020.0
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | mean y: 2591426.432835821
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | -- intersect: 11973953986.112345
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | intersect: 11973953986.112345
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | chi2: 0.0014584012688287828
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | -- intersect: 11973953986.112345
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | current memory leak: -6.83 B/s (using 67 data points, chi2=0.00)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | could have reported an average CPU frequency of 3736 MHz (6 samples)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | ..............................
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . Timing measurements:
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . get job = 0 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . initial setup = 2 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . payload setup = 5 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . stage-in = 0 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . payload execution = 4470 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . stage-out = 0 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | . log creation = 0 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,473 | INFO     | ..............................
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | 
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | job summary report
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | --------------------------------------------------
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | PanDA job id: 6743009380
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | task id: 45697541
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | errors: (none)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | pilot state: finished 
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | transexitcode: 0
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | exeerrorcode: 0
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | exeerrordiag: 
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | exitcode: 0
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | exitmsg: OK
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | cpuconsumptiontime: 33969 s
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | nevents: 400
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | neventsw: 0
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | pid: 274702
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | pgrp: 274702
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | corecount: 8
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | event service: False
[2025-07-23 08:53:30] 2025-07-23 12:52:57,935 | INFO     | sizes: {0: 2397508, 4: 2397770, 11: 2397798, 4479: 2424051, 4480: 2433104, 4482: 2433104, 4486: 2433426}
[2025-07-23 08:53:30] 2025-07-23 12:52:57,936 | INFO     | --------------------------------------------------
[2025-07-23 08:53:30] 2025-07-23 12:52:57,936 | INFO     | 
[2025-07-23 08:53:30] 2025-07-23 12:52:57,936 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,954 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,955 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 08:53:30] 2025-07-23 12:52:57,956 | INFO     | job 6743009380 has completed (purged errors)
[2025-07-23 08:53:30] 2025-07-23 12:52:57,956 | INFO     | overall cleanup function is called
[2025-07-23 08:53:30] 2025-07-23 12:52:58,240 | INFO     | PID=264579 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 08:53:30] 2025-07-23 12:52:58,240 | INFO     | .. there are 16 such processes running
[2025-07-23 08:53:30] 2025-07-23 12:52:58,964 | INFO     | --- collectZombieJob: --- 10, [274702]
[2025-07-23 08:53:30] 2025-07-23 12:52:58,964 | INFO     | zombie collector waiting for pid 274702
[2025-07-23 08:53:30] 2025-07-23 12:52:58,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 08:53:30] 2025-07-23 12:52:58,964 | INFO     | collected zombie processes
[2025-07-23 08:53:30] 2025-07-23 12:52:58,964 | INFO     | will attempt to kill all subprocesses of pid=274702
[2025-07-23 08:53:30] 2025-07-23 12:52:59,309 | INFO     | process IDs to be killed: [274702] (in reverse order)
[2025-07-23 08:53:30] 2025-07-23 12:52:59,421 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 08:53:30] 2025-07-23 12:52:59,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 08:53:30] 2025-07-23 12:52:59,436 | INFO     | did not find any defunct processes belonging to 274702
[2025-07-23 08:53:30] 2025-07-23 12:52:59,448 | INFO     | did not find any defunct processes belonging to 274702
[2025-07-23 08:53:30] 2025-07-23 12:52:59,448 | INFO     | ready for new job
[2025-07-23 08:53:30] 2025-07-23 12:52:59,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 08:53:30] 2025-07-23 12:52:59,449 | INFO     | ***************************************
[2025-07-23 08:53:30] 2025-07-23 12:52:59,449 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 08:53:30] 2025-07-23 12:52:59,449 | INFO     | ***************************************
[2025-07-23 08:53:30] 2025-07-23 12:52:59,449 | INFO     | 
[2025-07-23 08:53:30] 2025-07-23 12:52:59,454 | INFO     | architecture information:
[2025-07-23 08:53:30] 2025-07-23 12:52:59,454 | INFO     | executing command: cat /etc/os-release
[2025-07-23 08:53:30] 2025-07-23 12:52:59,466 | INFO     | cat /etc/os-release:
[2025-07-23 08:53:30] NAME="CentOS Linux"
[2025-07-23 08:53:30] VERSION="7 (Core)"
[2025-07-23 08:53:30] ID="centos"
[2025-07-23 08:53:30] ID_LIKE="rhel fedora"
[2025-07-23 08:53:30] VERSION_ID="7"
[2025-07-23 08:53:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 08:53:30] ANSI_COLOR="0;31"
[2025-07-23 08:53:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 08:53:30] HOME_URL="https://www.centos.org/"
[2025-07-23 08:53:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 08:53:30] 
[2025-07-23 08:53:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 08:53:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 08:53:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 08:53:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 08:53:30] 
[2025-07-23 08:53:30] 2025-07-23 12:52:59,466 | INFO     | ***************************************
[2025-07-23 08:53:30] 2025-07-23 12:52:59,969 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-23 08:53:30] 2025-07-23 12:52:59,985 | INFO     | sufficient remaining disk space (159419203584 B)
[2025-07-23 08:53:30] 2025-07-23 12:52:59,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 08:53:30] 2025-07-23 12:52:59,985 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 08:53:30] 2025-07-23 12:52:59,985 | INFO     | update_server=False
[2025-07-23 08:53:30] 2025-07-23 12:52:59,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 08:53:30] 2025-07-23 12:52:59,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:53:30] 2025-07-23 12:52:59,986 | INFO     | aborting loop
[2025-07-23 08:53:30] 2025-07-23 12:53:00,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 08:53:30] 2025-07-23 12:53:00,285 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 08:53:30] 2025-07-23 12:53:00,542 | INFO     | all data control threads have been joined
[2025-07-23 08:53:30] 2025-07-23 12:53:00,919 | INFO     | all payload control threads have been joined
[2025-07-23 08:53:30] 2025-07-23 12:53:00,990 | INFO     | [job] retrieve thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:00,991 | INFO     | [job] job monitor thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,345 | INFO     | all job control threads have been joined
[2025-07-23 08:53:30] 2025-07-23 12:53:01,390 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,445 | INFO     | [data] copytool_in thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,511 | INFO     | [payload] failed_post thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,546 | INFO     | [data] control thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,925 | INFO     | [payload] control thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:01,925 | INFO     | [job] validate thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:02,110 | INFO     | [data] copytool_out thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:02,126 | INFO     | [payload] validate_post thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:02,152 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:02,228 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:02,350 | INFO     | [job] control thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:02,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:53:30] 2025-07-23 12:53:03,545 | INFO     | [job] queue monitor thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:04,290 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 08:53:30] 2025-07-23 12:53:04,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999699720000)>', '<ExcThread(monitor, started 139999215347456)>']
[2025-07-23 08:53:30] 2025-07-23 12:53:09,833 | INFO     | all workflow threads have been joined
[2025-07-23 08:53:30] 2025-07-23 12:53:09,833 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 08:53:30] 2025-07-23 12:53:09,833 | INFO     | traces error code: 0
[2025-07-23 08:53:30] 2025-07-23 12:53:09,834 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 08:53:30] 2025-07-23 12:53:30,707 | INFO     | PID=264579 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 08:53:30] 2025-07-23 12:53:30,708 | INFO     | .. there are 16 such processes running
[2025-07-23 08:53:30] 2025-07-23 12:53:30,708 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 08:53:30] 2025-07-23 12:53:30,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 08:53:30] 2025-07-23 12:53:30,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 08:53:30] 2025-07-23 12:53:30,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 08:53:30] 2025-07-23 12:53:30,708 | INFO     | [monitor] control thread has ended
[2025-07-23 08:53:30] 2025-07-23 12:53:30,786 [wrapper] ==== pilot stdout END ====
[2025-07-23 08:53:30] 2025-07-23 12:53:30,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 08:53:30] 2025-07-23 12:53:30,792 [wrapper] pilotpid: 264579
[2025-07-23 08:53:30] 2025-07-23 12:53:30,794 [wrapper] Pilot exit status: 0
[2025-07-23 08:53:30] 2025-07-23 12:53:30,803 [wrapper] pandaids: 6743009380
[2025-07-23 08:53:30] 2025-07-23 12:53:30,885 [wrapper] cleanup supervisor_pilot  667386 264580
[2025-07-23 08:53:30] 2025-07-23 12:53:30,888 [wrapper] Test setup, not cleaning
[2025-07-23 08:53:30] 2025-07-23 12:53:30,891 [wrapper] apfmon messages muted
[2025-07-23 08:53:30] 2025-07-23 12:53:30,894 [wrapper] ==== wrapper stdout END ====
[2025-07-23 08:53:30] 2025-07-23 12:53:30,896 [wrapper] ==== wrapper stderr END ====
[2025-07-23 08:53:30]  *** Error codes and diagnostics ***
[2025-07-23 08:53:30]     "exeErrorCode": 0,
[2025-07-23 08:53:30]     "exeErrorDiag": "",
[2025-07-23 08:53:30]     "pilotErrorCode": 0,
[2025-07-23 08:53:30]     "pilotErrorDiag": "",
[2025-07-23 08:53:30]  *** Listing of results directory ***
[2025-07-23 08:53:30] total 638592
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 23:19 pilot3.tar.gz
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 00:01 queuedata.json
[2025-07-23 08:53:30] -rwx------. 1 boincer umatlas     36292 Jul 23 00:05 runpilot2-wrapper.sh
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas       100 Jul 23 07:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 08:53:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 07:37 run_atlas
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas       105 Jul 23 07:37 job.xml
[2025-07-23 08:53:30] -rw-r--r--. 2 boincer umatlas 344986392 Jul 23 07:37 EVNT.45697539._000184.pool.root.1
[2025-07-23 08:53:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 07:37 start_atlas.sh
[2025-07-23 08:53:30] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 07:37 shared
[2025-07-23 08:53:30] -rw-r--r--. 2 boincer umatlas    542899 Jul 23 07:37 input.tar.gz
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas         0 Jul 23 07:37 boinc_lockfile
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas      2594 Jul 23 07:37 pandaJob.out
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas    978421 Jul 23 07:37 agis_schedconf.cvmfs.json
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas   1593041 Jul 23 07:37 agis_ddmendpoints.agis.ALL.json
[2025-07-23 08:53:30] drwx------. 4 boincer umatlas      4096 Jul 23 07:37 pilot3
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas      7173 Jul 23 08:45 init_data.xml
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas 303534770 Jul 23 08:52 HITS.45697541._005451.pool.root.1
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas       529 Jul 23 08:52 boinc_task_state.xml
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas        95 Jul 23 08:52 pilot_heartbeat.json
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas      1030 Jul 23 08:52 memory_monitor_summary.json
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas    318296 Jul 23 08:52 log.45697541._005451.job.log.tgz.1
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas      7768 Jul 23 08:52 heartbeat.json
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas        27 Jul 23 08:53 wrapper_checkpoint.txt
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 08:53 boinc_mmap_file
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas       822 Jul 23 08:53 pilotlog.txt
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas    444866 Jul 23 08:53 log.45697541._005451.job.log.1
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas       357 Jul 23 08:53 output.list
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas       620 Jul 23 08:53 runtime_log
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas    778240 Jul 23 08:53 result.tar.gz
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas      8660 Jul 23 08:53 runtime_log.err
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas       651 Jul 23 08:53 E1JNDmHufy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrlvKDm7V7kcm.diag
[2025-07-23 08:53:30] -rw-r--r--. 1 boincer umatlas     21710 Jul 23 08:53 stderr.txt
[2025-07-23 08:53:30] HITS file was successfully produced:
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas 303534770 Jul 23 08:52 shared/HITS.pool.root.1
[2025-07-23 08:53:30]  *** Contents of shared directory: ***
[2025-07-23 08:53:30] total 634644
[2025-07-23 08:53:30] -rw-r--r--. 2 boincer umatlas 344986392 Jul 23 07:37 ATLAS.root_0
[2025-07-23 08:53:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 07:37 start_atlas.sh
[2025-07-23 08:53:30] -rw-r--r--. 2 boincer umatlas    542899 Jul 23 07:37 input.tar.gz
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas 303534770 Jul 23 08:52 HITS.pool.root.1
[2025-07-23 08:53:30] -rw-------. 1 boincer umatlas    778240 Jul 23 08:53 result.tar.gz
08:53:32 (260940): run_atlas exited; CPU time 34073.314815
08:53:32 (260940): called boinc_finish(0)

</stderr_txt>
]]>

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