Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:31:43 (69790): wrapper (7.7.26015): starting
19:31:43 (69790): wrapper: running run_atlas (--nthreads 12)
[2025-07-23 19:31:43] Arguments: --nthreads 12
[2025-07-23 19:31:43] Threads: 12
[2025-07-23 19:31:43] Checking for CVMFS
[2025-07-23 19:31:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 19:31:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 19:31:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 19:31:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 19:31:43] 2.13.1.0 8995 27408 249200 148666 1 188 36819918 46080000 6454 130560 0 247801093 99.906 62402351 23664 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-23 19:31:43] CVMFS is ok
[2025-07-23 19:31:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 19:31:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 19:31:43] Further information can be found at the LHC@home message board.
[2025-07-23 19:31:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 19:31:43] Checking for apptainer binary...
[2025-07-23 19:31:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 19:31:43] Running /usr/bin/apptainer --version
[2025-07-23 19:31:43] apptainer version 1.4.1-1.el9
[2025-07-23 19:31:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 19:31:43] mff2103.farm.particle.cz
[2025-07-23 19:31:43] apptainer works
[2025-07-23 19:31:43] Set ATHENA_PROC_NUMBER=12
[2025-07-23 19:31:43] Set ATHENA_CORE_NUMBER=12
[2025-07-23 19:31:44] Starting ATLAS job with PandaID=6743009334
[2025-07-23 19:31:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 21:01:56]  *** The last 200 lines of the pilot log: ***
[2025-07-23 21:01:56]  storage_token=
[2025-07-23 21:01:56]  surl=/scratch/.boinc/slots/3/PanDA_Pilot-6743009334/log.45697541._005405.job.log.tgz.1
[2025-07-23 21:01:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/ca/log.45697541._005405.job.log.tgz.1
[2025-07-23 21:01:56]  workdir=None
[2025-07-23 21:01:56] ]
[2025-07-23 21:01:56] 2025-07-23 19:01:14,409 | INFO     | transferring file log.45697541._005405.job.log.tgz.1 from /scratch/.boinc/slots/3/PanDA_Pilot-6743009334/log.45697541._005405.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-23 21:01:56] 2025-07-23 19:01:14,410 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/3/PanDA_Pilot-6743009334/log.45697541._005405.job.log.tgz.1 /scratch/.boinc/slots/3/log.45697541._005405.j
[2025-07-23 21:01:56] 2025-07-23 19:01:14,438 | INFO     | adding to output.list: log.45697541._005405.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/ca/log.45697541._005405.job.log.tg
[2025-07-23 21:01:56] 2025-07-23 19:01:14,439 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 21:01:56] 2025-07-23 19:01:14,439 | INFO     | summary of transferred files:
[2025-07-23 21:01:56] 2025-07-23 19:01:14,439 | INFO     |  -- lfn=log.45697541._005405.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 21:01:56] 2025-07-23 19:01:14,439 | INFO     | stage-out finished correctly
[2025-07-23 21:01:56] 2025-07-23 19:01:15,384 | INFO     | monitor loop #389: job 0:6743009334 is in state 'finished'
[2025-07-23 21:01:56] 2025-07-23 19:01:15,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 21:01:56] 2025-07-23 19:01:15,454 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 21:01:56] 2025-07-23 19:01:15,803 | INFO     | PID=73844 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 21:01:56] 2025-07-23 19:01:15,804 | INFO     | .. there are 8 such processes running
[2025-07-23 21:01:56] 2025-07-23 19:01:16,649 | INFO     | job 6743009334 has state=finished
[2025-07-23 21:01:56] 2025-07-23 19:01:16,649 | INFO     | preparing for final server update for job 6743009334 in state='finished'
[2025-07-23 21:01:56] 2025-07-23 19:01:17,345 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-23 21:01:56] 2025-07-23 19:01:17,346 | INFO     | this job has now completed (state=finished)
[2025-07-23 21:01:56] 2025-07-23 19:01:17,346 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 21:01:56] 2025-07-23 19:01:17,346 | INFO     | log transfer has been attempted: DONE
[2025-07-23 21:01:56] 2025-07-23 19:01:17,346 | INFO     | job 6743009334 has finished - writing final server update
[2025-07-23 21:01:56] 2025-07-23 19:01:17,346 | INFO     | total number of processed events: 400 (read)
[2025-07-23 21:01:56] 2025-07-23 19:01:17,347 | INFO     | executing command: lscpu
[2025-07-23 21:01:56] 2025-07-23 19:01:17,429 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 21:01:56] 2025-07-23 19:01:17,888 | INFO     | monitor loop #390: job 0:6743009334 is in state 'finished'
[2025-07-23 21:01:56] 2025-07-23 19:01:17,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 21:01:56] 2025-07-23 19:01:20,391 | INFO     | monitor loop #391: job 0:6743009334 is in state 'finished'
[2025-07-23 21:01:56] 2025-07-23 19:01:20,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 21:01:56] 2025-07-23 19:01:22,860 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-23 21:01:56] 2025-07-23 19:01:22,874 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2771.3340416666665
[2025-07-23 21:01:56] 2025-07-23 19:01:22,892 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6743009334/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 21:01:56] 2025-07-23 19:01:22,892 | INFO     | extracted standard info from prmon json
[2025-07-23 21:01:56] 2025-07-23 19:01:22,893 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 21:01:56] 2025-07-23 19:01:22,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 21:01:56] 2025-07-23 19:01:22,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 21:01:56] 2025-07-23 19:01:22,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 21:01:56] 2025-07-23 19:01:22,895 | INFO     | fitting pss+swap vs Time
[2025-07-23 21:01:56] 2025-07-23 19:01:22,895 | INFO     | sum of square deviations: 164765880.0
[2025-07-23 21:01:56] 2025-07-23 19:01:22,896 | INFO     | sum of deviations: -756686028.9999999
[2025-07-23 21:01:56] 2025-07-23 19:01:22,896 | INFO     | mean x: 1753294691.0
[2025-07-23 21:01:56] 2025-07-23 19:01:22,896 | INFO     | monitor loop #392: job 0:6743009334 is in state 'finished'
[2025-07-23 21:01:56] 2025-07-23 19:01:22,896 | INFO     | mean y: 2823864.12345679
[2025-07-23 21:01:56] 2025-07-23 19:01:22,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 21:01:56] 2025-07-23 19:01:22,897 | INFO     | -- intersect: 8054816166.16786
[2025-07-23 21:01:56] 2025-07-23 19:01:22,897 | INFO     | intersect: 8054816166.16786
[2025-07-23 21:01:56] 2025-07-23 19:01:22,897 | INFO     | chi2: 0.011434558024186062
[2025-07-23 21:01:56] 2025-07-23 19:01:22,897 | INFO     | -- intersect: 8054816166.16786
[2025-07-23 21:01:56] 2025-07-23 19:01:22,897 | INFO     | current memory leak: -4.59 B/s (using 81 data points, chi2=0.01)
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | could have reported an average CPU frequency of 2765 MHz (6 samples)
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | ..............................
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . Timing measurements:
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . get job = 0 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . initial setup = 1 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . payload setup = 8 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . stage-in = 0 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . payload execution = 5329 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . stage-out = 0 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | . log creation = 0 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,898 | INFO     | ..............................
[2025-07-23 21:01:56] 2025-07-23 19:01:22,991 | INFO     | 
[2025-07-23 21:01:56] 2025-07-23 19:01:22,991 | INFO     | job summary report
[2025-07-23 21:01:56] 2025-07-23 19:01:22,991 | INFO     | --------------------------------------------------
[2025-07-23 21:01:56] 2025-07-23 19:01:22,991 | INFO     | PanDA job id: 6743009334
[2025-07-23 21:01:56] 2025-07-23 19:01:22,991 | INFO     | task id: 45697541
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | errors: (none)
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | pilot state: finished 
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | transexitcode: 0
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | exeerrorcode: 0
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | exeerrordiag: 
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | exitcode: 0
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | exitmsg: OK
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | cpuconsumptiontime: 58156 s
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | nevents: 400
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | neventsw: 0
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | pid: 80973
[2025-07-23 21:01:56] 2025-07-23 19:01:22,992 | INFO     | pgrp: 80973
[2025-07-23 21:01:56] 2025-07-23 19:01:22,993 | INFO     | corecount: 12
[2025-07-23 21:01:56] 2025-07-23 19:01:22,993 | INFO     | event service: False
[2025-07-23 21:01:56] 2025-07-23 19:01:22,993 | INFO     | sizes: {0: 2397507, 6: 2397769, 11: 2397797, 5341: 2424289, 5342: 2433289, 5344: 2433345, 5351: 2433667}
[2025-07-23 21:01:56] 2025-07-23 19:01:22,993 | INFO     | --------------------------------------------------
[2025-07-23 21:01:56] 2025-07-23 19:01:22,993 | INFO     | 
[2025-07-23 21:01:56] 2025-07-23 19:01:22,993 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-07-23 21:01:56] 2025-07-23 19:01:23,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,018 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,018 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | job 6743009334 has completed (purged errors)
[2025-07-23 21:01:56] 2025-07-23 19:01:23,020 | INFO     | overall cleanup function is called
[2025-07-23 21:01:56] 2025-07-23 19:01:24,031 | INFO     | --- collectZombieJob: --- 10, [80973]
[2025-07-23 21:01:56] 2025-07-23 19:01:24,031 | INFO     | zombie collector waiting for pid 80973
[2025-07-23 21:01:56] 2025-07-23 19:01:24,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 21:01:56] 2025-07-23 19:01:24,031 | INFO     | collected zombie processes
[2025-07-23 21:01:56] 2025-07-23 19:01:24,031 | INFO     | will attempt to kill all subprocesses of pid=80973
[2025-07-23 21:01:56] 2025-07-23 19:01:24,374 | INFO     | process IDs to be killed: [80973] (in reverse order)
[2025-07-23 21:01:56] 2025-07-23 19:01:24,555 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 21:01:56] 2025-07-23 19:01:24,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 21:01:56] 2025-07-23 19:01:24,570 | INFO     | did not find any defunct processes belonging to 80973
[2025-07-23 21:01:56] 2025-07-23 19:01:24,582 | INFO     | did not find any defunct processes belonging to 80973
[2025-07-23 21:01:56] 2025-07-23 19:01:24,582 | INFO     | ready for new job
[2025-07-23 21:01:56] 2025-07-23 19:01:24,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 21:01:56] 2025-07-23 19:01:24,584 | INFO     | ***************************************
[2025-07-23 21:01:56] 2025-07-23 19:01:24,584 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 21:01:56] 2025-07-23 19:01:24,584 | INFO     | ***************************************
[2025-07-23 21:01:56] 2025-07-23 19:01:24,584 | INFO     | 
[2025-07-23 21:01:56] 2025-07-23 19:01:24,591 | INFO     | architecture information:
[2025-07-23 21:01:56] 2025-07-23 19:01:24,591 | INFO     | executing command: cat /etc/os-release
[2025-07-23 21:01:56] 2025-07-23 19:01:24,611 | INFO     | cat /etc/os-release:
[2025-07-23 21:01:56] NAME="CentOS Linux"
[2025-07-23 21:01:56] VERSION="7 (Core)"
[2025-07-23 21:01:56] ID="centos"
[2025-07-23 21:01:56] ID_LIKE="rhel fedora"
[2025-07-23 21:01:56] VERSION_ID="7"
[2025-07-23 21:01:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 21:01:56] ANSI_COLOR="0;31"
[2025-07-23 21:01:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 21:01:56] HOME_URL="https://www.centos.org/"
[2025-07-23 21:01:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 21:01:56] 
[2025-07-23 21:01:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 21:01:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 21:01:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 21:01:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 21:01:56] 
[2025-07-23 21:01:56] 2025-07-23 19:01:24,612 | INFO     | ***************************************
[2025-07-23 21:01:56] 2025-07-23 19:01:25,115 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-07-23 21:01:56] 2025-07-23 19:01:25,142 | INFO     | sufficient remaining disk space (1674982719488 B)
[2025-07-23 21:01:56] 2025-07-23 19:01:25,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 21:01:56] 2025-07-23 19:01:25,143 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 21:01:56] 2025-07-23 19:01:25,143 | INFO     | update_server=False
[2025-07-23 21:01:56] 2025-07-23 19:01:25,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 21:01:56] 2025-07-23 19:01:25,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 21:01:56] 2025-07-23 19:01:25,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-23 21:01:56] 2025-07-23 19:01:25,401 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-23 21:01:56] 2025-07-23 19:01:25,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 21:01:56] 2025-07-23 19:01:25,401 | INFO     | will abort loop
[2025-07-23 21:01:56] 2025-07-23 19:01:25,552 | INFO     | all payload control threads have been joined
[2025-07-23 21:01:56] 2025-07-23 19:01:25,564 | INFO     | all data control threads have been joined
[2025-07-23 21:01:56] 2025-07-23 19:01:25,844 | INFO     | all job control threads have been joined
[2025-07-23 21:01:56] 2025-07-23 19:01:26,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 21:01:56] 2025-07-23 19:01:26,149 | INFO     | [job] retrieve thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,150 | INFO     | [job] validate thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,251 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,311 | INFO     | [payload] failed_post thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,386 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,407 | INFO     | [job] job monitor thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,558 | INFO     | [payload] control thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,570 | INFO     | [data] control thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,715 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:26,850 | INFO     | [job] control thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:27,149 | INFO     | [data] copytool_out thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:27,271 | INFO     | [payload] validate_post thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:27,553 | INFO     | [data] copytool_in thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:28,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 21:01:56] 2025-07-23 19:01:29,007 | INFO     | [job] queue monitor thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:30,064 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:35,748 | INFO     | job.realtimelogging is not enabled
[2025-07-23 21:01:56] 2025-07-23 19:01:36,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 21:01:56] 2025-07-23 19:01:37,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140309393262400)>', '<ExcThread(monitor, started 140309040187136)>']
[2025-07-23 21:01:56] 2025-07-23 19:01:42,034 | INFO     | all workflow threads have been joined
[2025-07-23 21:01:56] 2025-07-23 19:01:42,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 21:01:56] 2025-07-23 19:01:42,035 | INFO     | traces error code: 0
[2025-07-23 21:01:56] 2025-07-23 19:01:42,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 21:01:56] 2025-07-23 19:01:53,725 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-23 21:01:56] 2025-07-23 19:01:56,310 | INFO     | PID=73844 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-23 21:01:56] 2025-07-23 19:01:56,311 | INFO     | .. there are 8 such processes running
[2025-07-23 21:01:56] 2025-07-23 19:01:56,311 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 21:01:56] 2025-07-23 19:01:56,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 21:01:56] 2025-07-23 19:01:56,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 21:01:56] 2025-07-23 19:01:56,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 21:01:56] 2025-07-23 19:01:56,312 | INFO     | [monitor] control thread has ended
[2025-07-23 21:01:56] 2025-07-23 19:01:56,436 [wrapper] ==== pilot stdout END ====
[2025-07-23 21:01:56] 2025-07-23 19:01:56,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 21:01:56] 2025-07-23 19:01:56,444 [wrapper] pilotpid: 73844
[2025-07-23 21:01:56] 2025-07-23 19:01:56,449 [wrapper] Pilot exit status: 0
[2025-07-23 21:01:56] 2025-07-23 19:01:56,464 [wrapper] pandaids: 6743009334
[2025-07-23 21:01:56] 2025-07-23 19:01:56,544 [wrapper] cleanup supervisor_pilot  305404 73845
[2025-07-23 21:01:56] 2025-07-23 19:01:56,548 [wrapper] Test setup, not cleaning
[2025-07-23 21:01:56] 2025-07-23 19:01:56,552 [wrapper] apfmon messages muted
[2025-07-23 21:01:56] 2025-07-23 19:01:56,556 [wrapper] ==== wrapper stdout END ====
[2025-07-23 21:01:56] 2025-07-23 19:01:56,559 [wrapper] ==== wrapper stderr END ====
[2025-07-23 21:01:56]  *** Error codes and diagnostics ***
[2025-07-23 21:01:56]     "exeErrorCode": 0,
[2025-07-23 21:01:56]     "exeErrorDiag": "",
[2025-07-23 21:01:56]     "pilotErrorCode": 0,
[2025-07-23 21:01:56]     "pilotErrorDiag": "",
[2025-07-23 21:01:56]  *** Listing of results directory ***
[2025-07-23 21:01:56] total 644600
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc    530466 Jul 23 05:19 pilot3.tar.gz
[2025-07-23 21:01:56] -rwx------ 1 boinc boinc     36292 Jul 23 05:55 runpilot2-wrapper.sh
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc      5112 Jul 23 05:55 queuedata.json
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc       100 Jul 23 19:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 21:01:56] -rwxr-xr-x 1 boinc boinc      7986 Jul 23 19:31 run_atlas
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc       105 Jul 23 19:31 job.xml
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc      6664 Jul 23 19:31 init_data.xml
[2025-07-23 21:01:56] -rw-r--r-- 2 boinc boinc 346939214 Jul 23 19:31 EVNT.45697539._000183.pool.root.1
[2025-07-23 21:01:56] -rw-r--r-- 2 boinc boinc    542896 Jul 23 19:31 input.tar.gz
[2025-07-23 21:01:56] -rw-r--r-- 2 boinc boinc     15095 Jul 23 19:31 start_atlas.sh
[2025-07-23 21:01:56] drwxrwx--x 2 boinc boinc      4096 Jul 23 19:31 shared
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc         0 Jul 23 19:31 boinc_lockfile
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc      2593 Jul 23 19:31 pandaJob.out
[2025-07-23 21:01:56] -rw------- 1 boinc boinc    978479 Jul 23 19:31 agis_schedconf.cvmfs.json
[2025-07-23 21:01:56] -rw------- 1 boinc boinc   1593041 Jul 23 19:31 agis_ddmendpoints.agis.ALL.json
[2025-07-23 21:01:56] drwx------ 4 boinc boinc      4096 Jul 23 19:31 pilot3
[2025-07-23 21:01:56] -rw------- 1 boinc boinc 307512138 Jul 23 21:00 HITS.45697541._005405.pool.root.1
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc       530 Jul 23 21:00 boinc_task_state.xml
[2025-07-23 21:01:56] -rw------- 1 boinc boinc      1023 Jul 23 21:01 memory_monitor_summary.json
[2025-07-23 21:01:56] -rw------- 1 boinc boinc    357398 Jul 23 21:01 log.45697541._005405.job.log.tgz.1
[2025-07-23 21:01:56] -rw------- 1 boinc boinc      7773 Jul 23 21:01 heartbeat.json
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc      8192 Jul 23 21:01 boinc_mmap_file
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc        27 Jul 23 21:01 wrapper_checkpoint.txt
[2025-07-23 21:01:56] -rw------- 1 boinc boinc       820 Jul 23 21:01 pilotlog.txt
[2025-07-23 21:01:56] -rw------- 1 boinc boinc        95 Jul 23 21:01 pilot_heartbeat.json
[2025-07-23 21:01:56] -rw------- 1 boinc boinc    515421 Jul 23 21:01 log.45697541._005405.job.log.1
[2025-07-23 21:01:56] -rw------- 1 boinc boinc       357 Jul 23 21:01 output.list
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc       620 Jul 23 21:01 runtime_log
[2025-07-23 21:01:56] -rw------- 1 boinc boinc    890880 Jul 23 21:01 result.tar.gz
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc      8721 Jul 23 21:01 runtime_log.err
[2025-07-23 21:01:56] -rw------- 1 boinc boinc       663 Jul 23 21:01 B5SNDmFlfy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGqKLDmDbtCVn.diag
[2025-07-23 21:01:56] -rw-r--r-- 1 boinc boinc     22243 Jul 23 21:01 stderr.txt
[2025-07-23 21:01:56] HITS file was successfully produced:
[2025-07-23 21:01:56] -rw------- 1 boinc boinc 307512138 Jul 23 21:00 shared/HITS.pool.root.1
[2025-07-23 21:01:56]  *** Contents of shared directory: ***
[2025-07-23 21:01:56] total 640544
[2025-07-23 21:01:56] -rw-r--r-- 2 boinc boinc 346939214 Jul 23 19:31 ATLAS.root_0
[2025-07-23 21:01:56] -rw-r--r-- 2 boinc boinc    542896 Jul 23 19:31 input.tar.gz
[2025-07-23 21:01:56] -rw-r--r-- 2 boinc boinc     15095 Jul 23 19:31 start_atlas.sh
[2025-07-23 21:01:56] -rw------- 1 boinc boinc 307512138 Jul 23 21:00 HITS.pool.root.1
[2025-07-23 21:01:56] -rw------- 1 boinc boinc    890880 Jul 23 21:01 result.tar.gz
21:01:58 (69790): run_atlas exited; CPU time 58253.434190
21:01:58 (69790): called boinc_finish(0)

</stderr_txt>
]]>

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