Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:44 (2132835): wrapper (7.7.26015): starting
14:22:44 (2132835): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 14:22:44] Arguments: --nthreads 12
[2025-07-24 14:22:44] Threads: 12
[2025-07-24 14:22:44] Checking for CVMFS
[2025-07-24 14:22:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 14:22:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 14:22:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 14:22:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 14:22:45] 2.13.1.0 4489 28777 101928 148699 0 57 40106508 46080000 922 130560 0 16369947 99.993 849907 27077 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-24 14:22:45] CVMFS is ok
[2025-07-24 14:22:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 14:22:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 14:22:45] Further information can be found at the LHC@home message board.
[2025-07-24 14:22:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 14:22:45] Checking for apptainer binary...
[2025-07-24 14:22:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 14:22:45] Running /usr/bin/apptainer --version
[2025-07-24 14:22:45] apptainer version 1.4.1-1.el9
[2025-07-24 14:22:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 14:22:45] minis01.farm.particle.cz
[2025-07-24 14:22:45] apptainer works
[2025-07-24 14:22:45] Set ATHENA_PROC_NUMBER=12
[2025-07-24 14:22:45] Set ATHENA_CORE_NUMBER=12
[2025-07-24 14:22:45] Starting ATLAS job with PandaID=6743008253
[2025-07-24 14:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 15:42:43]  *** The last 200 lines of the pilot log: ***
[2025-07-24 15:42:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-24 15:42:43]  is_altstaged=None
[2025-07-24 15:42:43]  is_tar=False
[2025-07-24 15:42:43]  lfn=log.45697541._005190.job.log.tgz.1
[2025-07-24 15:42:43]  mtime=0
[2025-07-24 15:42:43]  protocol_id=None
[2025-07-24 15:42:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-24 15:42:43]  replicas=None
[2025-07-24 15:42:43]  scope=mc23_13p6TeV
[2025-07-24 15:42:43]  status=None
[2025-07-24 15:42:43]  status_code=0
[2025-07-24 15:42:43]  storage_token=
[2025-07-24 15:42:43]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6743008253/log.45697541._005190.job.log.tgz.1
[2025-07-24 15:42:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/8e/log.45697541._005190.job.log.tgz.1
[2025-07-24 15:42:43]  workdir=None
[2025-07-24 15:42:43] ]
[2025-07-24 15:42:43] 2025-07-24 13:42:06,364 | INFO     | transferring file log.45697541._005190.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6743008253/log.45697541._005190.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-24 15:42:43] 2025-07-24 13:42:06,364 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6743008253/log.45697541._005190.job.log.tgz.1 /scratch/.boinc/slots/1/log.45697541._005190.j
[2025-07-24 15:42:43] 2025-07-24 13:42:06,379 | INFO     | adding to output.list: log.45697541._005190.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/8e/log.45697541._005190.job.log.tg
[2025-07-24 15:42:43] 2025-07-24 13:42:06,380 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 15:42:43] 2025-07-24 13:42:06,380 | INFO     | summary of transferred files:
[2025-07-24 15:42:43] 2025-07-24 13:42:06,380 | INFO     |  -- lfn=log.45697541._005190.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 15:42:43] 2025-07-24 13:42:06,380 | INFO     | stage-out finished correctly
[2025-07-24 15:42:43] 2025-07-24 13:42:06,590 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 15:42:43] 2025-07-24 13:42:06,665 | INFO     | job 6743008253 has state=finished
[2025-07-24 15:42:43] 2025-07-24 13:42:06,666 | INFO     | preparing for final server update for job 6743008253 in state='finished'
[2025-07-24 15:42:43] 2025-07-24 13:42:07,199 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-24 15:42:43] 2025-07-24 13:42:07,200 | INFO     | this job has now completed (state=finished)
[2025-07-24 15:42:43] 2025-07-24 13:42:07,200 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 15:42:43] 2025-07-24 13:42:07,200 | INFO     | log transfer has been attempted: DONE
[2025-07-24 15:42:43] 2025-07-24 13:42:07,200 | INFO     | job 6743008253 has finished - writing final server update
[2025-07-24 15:42:43] 2025-07-24 13:42:07,201 | INFO     | total number of processed events: 400 (read)
[2025-07-24 15:42:43] 2025-07-24 13:42:07,201 | INFO     | executing command: lscpu
[2025-07-24 15:42:43] 2025-07-24 13:42:07,231 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 15:42:43] 2025-07-24 13:42:08,073 | INFO     | monitor loop #358: job 0:6743008253 is in state 'finished'
[2025-07-24 15:42:43] 2025-07-24 13:42:08,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,131 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 15:42:43] 2025-07-24 13:42:10,135 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2734.4486562499997
[2025-07-24 15:42:43] 2025-07-24 13:42:10,140 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6743008253/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,141 | INFO     | extracted standard info from prmon json
[2025-07-24 15:42:43] 2025-07-24 13:42:10,141 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 15:42:43] 2025-07-24 13:42:10,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 15:42:43] 2025-07-24 13:42:10,141 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:42:43] 2025-07-24 13:42:10,141 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:42:43] 2025-07-24 13:42:10,143 | INFO     | fitting pss+swap vs Time
[2025-07-24 15:42:43] 2025-07-24 13:42:10,143 | INFO     | sum of square deviations: 110960220.0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,143 | INFO     | sum of deviations: -13511919863.0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,143 | INFO     | mean x: 1753362238.0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | mean y: 2964776.76056338
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | -- intersect: 213514528206.12592
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | intersect: 213514528206.12592
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | chi2: 0.09300269880784795
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | -- intersect: 213514528206.12592
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | current memory leak: -121.77 B/s (using 71 data points, chi2=0.09)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | could have reported an average CPU frequency of 2781 MHz (6 samples)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | ..............................
[2025-07-24 15:42:43] 2025-07-24 13:42:10,144 | INFO     | . Timing measurements:
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . get job = 0 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . initial setup = 1 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . payload setup = 5 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . stage-in = 0 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . payload execution = 4728 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . stage-out = 0 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | . log creation = 0 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,145 | INFO     | ..............................
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | 
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | job summary report
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | --------------------------------------------------
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | PanDA job id: 6743008253
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | task id: 45697541
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | errors: (none)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | pilot state: finished 
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | transexitcode: 0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | exeerrorcode: 0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | exeerrordiag: 
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | exitcode: 0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | exitmsg: OK
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | cpuconsumptiontime: 52145 s
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | nevents: 400
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | neventsw: 0
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | pid: 2143417
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | pgrp: 2143417
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | corecount: 12
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | event service: False
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | sizes: {0: 2397338, 1: 2397537, 4: 2397799, 11: 2397827, 4737: 2424117, 4738: 2433301, 4742: 2433439}
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | --------------------------------------------------
[2025-07-24 15:42:43] 2025-07-24 13:42:10,218 | INFO     | 
[2025-07-24 15:42:43] 2025-07-24 13:42:10,219 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-07-24 15:42:43] 2025-07-24 13:42:10,234 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,236 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,237 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,237 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,237 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,237 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 15:42:43] 2025-07-24 13:42:10,237 | INFO     | job 6743008253 has completed (purged errors)
[2025-07-24 15:42:43] 2025-07-24 13:42:10,237 | INFO     | overall cleanup function is called
[2025-07-24 15:42:43] 2025-07-24 13:42:11,246 | INFO     | --- collectZombieJob: --- 10, [2143417]
[2025-07-24 15:42:43] 2025-07-24 13:42:11,246 | INFO     | zombie collector waiting for pid 2143417
[2025-07-24 15:42:43] 2025-07-24 13:42:11,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 15:42:43] 2025-07-24 13:42:11,246 | INFO     | collected zombie processes
[2025-07-24 15:42:43] 2025-07-24 13:42:11,246 | INFO     | will attempt to kill all subprocesses of pid=2143417
[2025-07-24 15:42:43] 2025-07-24 13:42:11,394 | INFO     | process IDs to be killed: [2143417] (in reverse order)
[2025-07-24 15:42:43] 2025-07-24 13:42:11,439 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 15:42:43] 2025-07-24 13:42:11,440 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 15:42:43] 2025-07-24 13:42:11,444 | INFO     | did not find any defunct processes belonging to 2143417
[2025-07-24 15:42:43] 2025-07-24 13:42:11,447 | INFO     | did not find any defunct processes belonging to 2143417
[2025-07-24 15:42:43] 2025-07-24 13:42:11,448 | INFO     | ready for new job
[2025-07-24 15:42:43] 2025-07-24 13:42:11,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 15:42:43] 2025-07-24 13:42:11,449 | INFO     | ***************************************
[2025-07-24 15:42:43] 2025-07-24 13:42:11,449 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 15:42:43] 2025-07-24 13:42:11,449 | INFO     | ***************************************
[2025-07-24 15:42:43] 2025-07-24 13:42:11,449 | INFO     | 
[2025-07-24 15:42:43] 2025-07-24 13:42:11,450 | INFO     | architecture information:
[2025-07-24 15:42:43] 2025-07-24 13:42:11,451 | INFO     | executing command: cat /etc/os-release
[2025-07-24 15:42:43] 2025-07-24 13:42:11,463 | INFO     | cat /etc/os-release:
[2025-07-24 15:42:43] NAME="CentOS Linux"
[2025-07-24 15:42:43] VERSION="7 (Core)"
[2025-07-24 15:42:43] ID="centos"
[2025-07-24 15:42:43] ID_LIKE="rhel fedora"
[2025-07-24 15:42:43] VERSION_ID="7"
[2025-07-24 15:42:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 15:42:43] ANSI_COLOR="0;31"
[2025-07-24 15:42:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 15:42:43] HOME_URL="https://www.centos.org/"
[2025-07-24 15:42:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 15:42:43] 
[2025-07-24 15:42:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 15:42:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 15:42:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 15:42:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 15:42:43] 
[2025-07-24 15:42:43] 2025-07-24 13:42:11,463 | INFO     | ***************************************
[2025-07-24 15:42:43] 2025-07-24 13:42:11,966 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-24 15:42:43] 2025-07-24 13:42:11,981 | INFO     | sufficient remaining disk space (706100592640 B)
[2025-07-24 15:42:43] 2025-07-24 13:42:11,981 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 15:42:43] 2025-07-24 13:42:11,981 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 15:42:43] 2025-07-24 13:42:11,981 | INFO     | update_server=False
[2025-07-24 15:42:43] 2025-07-24 13:42:11,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 15:42:43] 2025-07-24 13:42:11,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:42:43] 2025-07-24 13:42:11,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 15:42:43] 2025-07-24 13:42:11,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:42:43] 2025-07-24 13:42:11,983 | INFO     | aborting loop
[2025-07-24 15:42:43] 2025-07-24 13:42:12,174 | INFO     | all job control threads have been joined
[2025-07-24 15:42:43] 2025-07-24 13:42:12,418 | INFO     | all data control threads have been joined
[2025-07-24 15:42:43] 2025-07-24 13:42:12,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 15:42:43] 2025-07-24 13:42:12,987 | INFO     | [job] retrieve thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:12,987 | INFO     | [job] job monitor thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:12,988 | INFO     | [job] queue monitor thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,103 | INFO     | [payload] validate_post thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,180 | INFO     | [job] control thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,308 | INFO     | all payload control threads have been joined
[2025-07-24 15:42:43] 2025-07-24 13:42:13,326 | INFO     | [data] copytool_in thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,424 | INFO     | [data] control thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,605 | INFO     | [job] validate thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,918 | INFO     | [payload] failed_post thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,935 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,943 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:13,988 | INFO     | [data] copytool_out thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:14,146 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:14,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:14,314 | INFO     | [payload] control thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:16,681 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 15:42:43] 2025-07-24 13:42:17,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139818558146368)>', '<ExcThread(monitor, started 139818071738112)>']
[2025-07-24 15:42:43] 2025-07-24 13:42:22,136 | INFO     | all workflow threads have been joined
[2025-07-24 15:42:43] 2025-07-24 13:42:22,136 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 15:42:43] 2025-07-24 13:42:22,137 | INFO     | traces error code: 0
[2025-07-24 15:42:43] 2025-07-24 13:42:22,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 15:42:43] 2025-07-24 13:42:43,066 | INFO     | PID=2136630 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 15:42:43] 2025-07-24 13:42:43,066 | INFO     | .. there are 2 such processes running
[2025-07-24 15:42:43] 2025-07-24 13:42:43,066 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 15:42:43] 2025-07-24 13:42:43,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 15:42:43] 2025-07-24 13:42:43,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 15:42:43] 2025-07-24 13:42:43,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 15:42:43] 2025-07-24 13:42:43,067 | CRITICAL | thread 'MainThread' is not alive
[2025-07-24 15:42:43] 2025-07-24 13:42:43,067 | INFO     | [monitor] control thread has ended
[2025-07-24 15:42:43] 2025-07-24 13:42:43,165 [wrapper] ==== pilot stdout END ====
[2025-07-24 15:42:43] 2025-07-24 13:42:43,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 15:42:43] 2025-07-24 13:42:43,170 [wrapper] pilotpid: 2136630
[2025-07-24 15:42:43] 2025-07-24 13:42:43,173 [wrapper] Pilot exit status: 0
[2025-07-24 15:42:43] 2025-07-24 13:42:43,183 [wrapper] pandaids: 6743008253
[2025-07-24 15:42:43] 2025-07-24 13:42:43,216 [wrapper] cleanup supervisor_pilot 2214077 2136631
[2025-07-24 15:42:43] 2025-07-24 13:42:43,219 [wrapper] Test setup, not cleaning
[2025-07-24 15:42:43] 2025-07-24 13:42:43,221 [wrapper] apfmon messages muted
[2025-07-24 15:42:43] 2025-07-24 13:42:43,224 [wrapper] ==== wrapper stdout END ====
[2025-07-24 15:42:43] 2025-07-24 13:42:43,226 [wrapper] ==== wrapper stderr END ====
[2025-07-24 15:42:43]  *** Error codes and diagnostics ***
[2025-07-24 15:42:43]     "exeErrorCode": 0,
[2025-07-24 15:42:43]     "exeErrorDiag": "",
[2025-07-24 15:42:43]     "pilotErrorCode": 0,
[2025-07-24 15:42:43]     "pilotErrorDiag": "",
[2025-07-24 15:42:43]  *** Listing of results directory ***
[2025-07-24 15:42:43] total 638204
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc    530466 Jul 23 05:19 pilot3.tar.gz
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc      5112 Jul 23 05:20 queuedata.json
[2025-07-24 15:42:43] -rwx------ 1 boinc boinc     36292 Jul 23 05:21 runpilot2-wrapper.sh
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc       100 Jul 24 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 15:42:43] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 14:22 run_atlas
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc       105 Jul 24 14:22 job.xml
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc      6522 Jul 24 14:22 init_data.xml
[2025-07-24 15:42:43] -rw-r--r-- 2 boinc boinc 347378578 Jul 24 14:22 EVNT.45697539._000174.pool.root.1
[2025-07-24 15:42:43] -rw-r--r-- 2 boinc boinc     15095 Jul 24 14:22 start_atlas.sh
[2025-07-24 15:42:43] drwxrwx--x 2 boinc boinc      4096 Jul 24 14:22 shared
[2025-07-24 15:42:43] -rw-r--r-- 2 boinc boinc    542897 Jul 24 14:22 input.tar.gz
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc         0 Jul 24 14:22 boinc_lockfile
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc      2594 Jul 24 14:22 pandaJob.out
[2025-07-24 15:42:43] -rw------- 1 boinc boinc    979599 Jul 24 14:22 agis_schedconf.cvmfs.json
[2025-07-24 15:42:43] -rw------- 1 boinc boinc   1593041 Jul 24 14:22 agis_ddmendpoints.agis.ALL.json
[2025-07-24 15:42:43] drwx------ 4 boinc boinc      4096 Jul 24 14:22 pilot3
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc       529 Jul 24 15:41 boinc_task_state.xml
[2025-07-24 15:42:43] -rw------- 1 boinc boinc 300584203 Jul 24 15:41 HITS.45697541._005190.pool.root.1
[2025-07-24 15:42:43] -rw------- 1 boinc boinc        95 Jul 24 15:41 pilot_heartbeat.json
[2025-07-24 15:42:43] -rw------- 1 boinc boinc      1013 Jul 24 15:42 memory_monitor_summary.json
[2025-07-24 15:42:43] -rw------- 1 boinc boinc    365252 Jul 24 15:42 log.45697541._005190.job.log.tgz.1
[2025-07-24 15:42:43] -rw------- 1 boinc boinc      7773 Jul 24 15:42 heartbeat.json
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc      8192 Jul 24 15:42 boinc_mmap_file
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc        27 Jul 24 15:42 wrapper_checkpoint.txt
[2025-07-24 15:42:43] -rw------- 1 boinc boinc       892 Jul 24 15:42 pilotlog.txt
[2025-07-24 15:42:43] -rw------- 1 boinc boinc    474303 Jul 24 15:42 log.45697541._005190.job.log.1
[2025-07-24 15:42:43] -rw------- 1 boinc boinc       357 Jul 24 15:42 output.list
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc       620 Jul 24 15:42 runtime_log
[2025-07-24 15:42:43] -rw------- 1 boinc boinc    860160 Jul 24 15:42 result.tar.gz
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc      8721 Jul 24 15:42 runtime_log.err
[2025-07-24 15:42:43] -rw------- 1 boinc boinc       664 Jul 24 15:42 a1PMDmHEfy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxnKLDmxGZlJm.diag
[2025-07-24 15:42:43] -rw-r--r-- 1 boinc boinc     21425 Jul 24 15:42 stderr.txt
[2025-07-24 15:42:43] HITS file was successfully produced:
[2025-07-24 15:42:43] -rw------- 1 boinc boinc 300584203 Jul 24 15:41 shared/HITS.pool.root.1
[2025-07-24 15:42:43]  *** Contents of shared directory: ***
[2025-07-24 15:42:43] total 634176
[2025-07-24 15:42:43] -rw-r--r-- 2 boinc boinc 347378578 Jul 24 14:22 ATLAS.root_0
[2025-07-24 15:42:43] -rw-r--r-- 2 boinc boinc     15095 Jul 24 14:22 start_atlas.sh
[2025-07-24 15:42:43] -rw-r--r-- 2 boinc boinc    542897 Jul 24 14:22 input.tar.gz
[2025-07-24 15:42:43] -rw------- 1 boinc boinc 300584203 Jul 24 15:41 HITS.pool.root.1
[2025-07-24 15:42:43] -rw------- 1 boinc boinc    860160 Jul 24 15:42 result.tar.gz
15:42:44 (2132835): run_atlas exited; CPU time 52199.459219
15:42:44 (2132835): called boinc_finish(0)

</stderr_txt>
]]>

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