Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:50:08 (49521): wrapper (7.7.26015): starting
06:50:08 (49521): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 06:50:08] Arguments: --nthreads 8
[2025-07-23 06:50:08] Threads: 8
[2025-07-23 06:50:08] Checking for CVMFS
[2025-07-23 06:50:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 06:50:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 06:50:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 06:50:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 06:50:08] 2.13.1.0 4026694 2316 77996 148655 1 188 39854716 40960000 12099 16776704 0 32496772 99.999 81753 52338 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 06:50:08] CVMFS is ok
[2025-07-23 06:50:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 06:50:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 06:50:08] Further information can be found at the LHC@home message board.
[2025-07-23 06:50:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 06:50:08] Checking for apptainer binary...
[2025-07-23 06:50:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 06:50:08] Running /usr/bin/apptainer --version
[2025-07-23 06:50:08] apptainer version 1.4.1-1.el9
[2025-07-23 06:50:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 06:50:08] c-208-38.aglt2.org
[2025-07-23 06:50:08] apptainer works
[2025-07-23 06:50:08] Set ATHENA_PROC_NUMBER=8
[2025-07-23 06:50:08] Set ATHENA_CORE_NUMBER=8
[2025-07-23 06:50:08] Starting ATLAS job with PandaID=6743007591
[2025-07-23 06:50:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 08:07:58]  *** The last 200 lines of the pilot log: ***
[2025-07-23 08:07:58]  status=None
[2025-07-23 08:07:58]  status_code=0
[2025-07-23 08:07:58]  storage_token=
[2025-07-23 08:07:58]  surl=/tmp/boinchome/slots/15/PanDA_Pilot-6743007591/log.45697541._004982.job.log.tgz.1
[2025-07-23 08:07:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/1e/log.45697541._004982.job.log.tgz.1
[2025-07-23 08:07:58]  workdir=None
[2025-07-23 08:07:58] ]
[2025-07-23 08:07:58] 2025-07-23 12:07:17,158 | INFO     | transferring file log.45697541._004982.job.log.tgz.1 from /tmp/boinchome/slots/15/PanDA_Pilot-6743007591/log.45697541._004982.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-23 08:07:58] 2025-07-23 12:07:17,159 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/15/PanDA_Pilot-6743007591/log.45697541._004982.job.log.tgz.1 /tmp/boinchome/slots/15/log.45697541._004982.j
[2025-07-23 08:07:58] 2025-07-23 12:07:17,176 | INFO     | adding to output.list: log.45697541._004982.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/1e/log.45697541._004982.job.log.tg
[2025-07-23 08:07:58] 2025-07-23 12:07:17,177 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 08:07:58] 2025-07-23 12:07:17,177 | INFO     | summary of transferred files:
[2025-07-23 08:07:58] 2025-07-23 12:07:17,177 | INFO     |  -- lfn=log.45697541._004982.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 08:07:58] 2025-07-23 12:07:17,178 | INFO     | stage-out finished correctly
[2025-07-23 08:07:58] 2025-07-23 12:07:18,513 | WARNING  | process 61533 can no longer be monitored (due to stat problems) - aborting
[2025-07-23 08:07:58] 2025-07-23 12:07:18,513 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6743007591/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 08:07:58] 2025-07-23 12:07:18,845 | INFO     | number of running child processes to parent process 61533: 1
[2025-07-23 08:07:58] 2025-07-23 12:07:18,845 | INFO     | maximum number of monitored processes: 6
[2025-07-23 08:07:58] 2025-07-23 12:07:20,429 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 08:07:58] 2025-07-23 12:07:21,349 | INFO     | monitor loop #340: job 0:6743007591 is in state 'finished'
[2025-07-23 08:07:58] 2025-07-23 12:07:21,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:07:58] 2025-07-23 12:07:22,613 | INFO     | job 6743007591 has state=finished
[2025-07-23 08:07:58] 2025-07-23 12:07:22,613 | INFO     | preparing for final server update for job 6743007591 in state='finished'
[2025-07-23 08:07:58] 2025-07-23 12:07:22,614 | INFO     | this job has now completed (state=finished)
[2025-07-23 08:07:58] 2025-07-23 12:07:22,614 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 08:07:58] 2025-07-23 12:07:22,614 | INFO     | log transfer has been attempted: DONE
[2025-07-23 08:07:58] 2025-07-23 12:07:22,614 | INFO     | job 6743007591 has finished - writing final server update
[2025-07-23 08:07:58] 2025-07-23 12:07:22,614 | INFO     | total number of processed events: 400 (read)
[2025-07-23 08:07:58] 2025-07-23 12:07:22,615 | INFO     | executing command: lscpu
[2025-07-23 08:07:58] 2025-07-23 12:07:22,670 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 08:07:58] 2025-07-23 12:07:23,853 | INFO     | monitor loop #341: job 0:6743007591 is in state 'finished'
[2025-07-23 08:07:58] 2025-07-23 12:07:23,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,355 | INFO     | monitor loop #342: job 0:6743007591 is in state 'finished'
[2025-07-23 08:07:58] 2025-07-23 12:07:26,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,428 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 08:07:58] 2025-07-23 12:07:26,434 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3769.6440156249996
[2025-07-23 08:07:58] 2025-07-23 12:07:26,447 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6743007591/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,447 | INFO     | extracted standard info from prmon json
[2025-07-23 08:07:58] 2025-07-23 12:07:26,447 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 08:07:58] 2025-07-23 12:07:26,448 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 08:07:58] 2025-07-23 12:07:26,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 08:07:58] 2025-07-23 12:07:26,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 08:07:58] 2025-07-23 12:07:26,449 | INFO     | fitting pss+swap vs Time
[2025-07-23 08:07:58] 2025-07-23 12:07:26,449 | INFO     | sum of square deviations: 101843770.0
[2025-07-23 08:07:58] 2025-07-23 12:07:26,449 | INFO     | sum of deviations: 77801230.00000001
[2025-07-23 08:07:58] 2025-07-23 12:07:26,449 | INFO     | mean x: 1753270221.0
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | mean y: 2586108.8695652173
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | -- intersect: -1336784769.841738
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | intersect: -1336784769.841738
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | chi2: 0.0014886604039097823
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | -- intersect: -1336784769.841738
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | current memory leak: 0.76 B/s (using 69 data points, chi2=0.00)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | could have reported an average CPU frequency of 3763 MHz (6 samples)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | ..............................
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . Timing measurements:
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . get job = 0 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . initial setup = 2 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . payload setup = 5 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . stage-in = 0 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . payload execution = 4595 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . stage-out = 0 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | . log creation = 0 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,450 | INFO     | ..............................
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | 
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | job summary report
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | --------------------------------------------------
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | PanDA job id: 6743007591
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | task id: 45697541
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | errors: (none)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | pilot state: finished 
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | transexitcode: 0
[2025-07-23 08:07:58] 2025-07-23 12:07:26,509 | INFO     | exeerrorcode: 0
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | exeerrordiag: 
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | exitcode: 0
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | exitmsg: OK
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | cpuconsumptiontime: 34825 s
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | nevents: 400
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | neventsw: 0
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | pid: 61533
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | pgrp: 61533
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | corecount: 8
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | event service: False
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | sizes: {0: 2397517, 3: 2397779, 11: 2397807, 4605: 2433059, 4609: 2433059, 4615: 2433253}
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | --------------------------------------------------
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | 
[2025-07-23 08:07:58] 2025-07-23 12:07:26,510 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-07-23 08:07:58] 2025-07-23 12:07:26,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | job 6743007591 has completed (purged errors)
[2025-07-23 08:07:58] 2025-07-23 12:07:26,529 | INFO     | overall cleanup function is called
[2025-07-23 08:07:58] 2025-07-23 12:07:27,537 | INFO     | --- collectZombieJob: --- 10, [61533]
[2025-07-23 08:07:58] 2025-07-23 12:07:27,537 | INFO     | zombie collector waiting for pid 61533
[2025-07-23 08:07:58] 2025-07-23 12:07:27,537 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 08:07:58] 2025-07-23 12:07:27,537 | INFO     | collected zombie processes
[2025-07-23 08:07:58] 2025-07-23 12:07:27,537 | INFO     | will attempt to kill all subprocesses of pid=61533
[2025-07-23 08:07:58] 2025-07-23 12:07:27,892 | INFO     | process IDs to be killed: [61533] (in reverse order)
[2025-07-23 08:07:58] 2025-07-23 12:07:28,013 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 08:07:58] 2025-07-23 12:07:28,014 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 08:07:58] 2025-07-23 12:07:28,031 | INFO     | did not find any defunct processes belonging to 61533
[2025-07-23 08:07:58] 2025-07-23 12:07:28,045 | INFO     | did not find any defunct processes belonging to 61533
[2025-07-23 08:07:58] 2025-07-23 12:07:28,045 | INFO     | ready for new job
[2025-07-23 08:07:58] 2025-07-23 12:07:28,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 08:07:58] 2025-07-23 12:07:28,046 | INFO     | ***************************************
[2025-07-23 08:07:58] 2025-07-23 12:07:28,046 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 08:07:58] 2025-07-23 12:07:28,047 | INFO     | ***************************************
[2025-07-23 08:07:58] 2025-07-23 12:07:28,047 | INFO     | 
[2025-07-23 08:07:58] 2025-07-23 12:07:28,051 | INFO     | architecture information:
[2025-07-23 08:07:58] 2025-07-23 12:07:28,051 | INFO     | executing command: cat /etc/os-release
[2025-07-23 08:07:58] 2025-07-23 12:07:28,066 | INFO     | cat /etc/os-release:
[2025-07-23 08:07:58] NAME="CentOS Linux"
[2025-07-23 08:07:58] VERSION="7 (Core)"
[2025-07-23 08:07:58] ID="centos"
[2025-07-23 08:07:58] ID_LIKE="rhel fedora"
[2025-07-23 08:07:58] VERSION_ID="7"
[2025-07-23 08:07:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 08:07:58] ANSI_COLOR="0;31"
[2025-07-23 08:07:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 08:07:58] HOME_URL="https://www.centos.org/"
[2025-07-23 08:07:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 08:07:58] 
[2025-07-23 08:07:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 08:07:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 08:07:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 08:07:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 08:07:58] 
[2025-07-23 08:07:58] 2025-07-23 12:07:28,067 | INFO     | ***************************************
[2025-07-23 08:07:58] 2025-07-23 12:07:28,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-07-23 08:07:58] 2025-07-23 12:07:28,587 | INFO     | sufficient remaining disk space (160210878464 B)
[2025-07-23 08:07:58] 2025-07-23 12:07:28,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 08:07:58] 2025-07-23 12:07:28,588 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 08:07:58] 2025-07-23 12:07:28,588 | INFO     | update_server=False
[2025-07-23 08:07:58] 2025-07-23 12:07:28,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 08:07:58] 2025-07-23 12:07:28,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 08:07:58] 2025-07-23 12:07:28,858 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-23 08:07:58] 2025-07-23 12:07:28,858 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-23 08:07:58] 2025-07-23 12:07:28,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:07:58] 2025-07-23 12:07:28,858 | INFO     | will abort loop
[2025-07-23 08:07:58] 2025-07-23 12:07:28,950 | INFO     | all data control threads have been joined
[2025-07-23 08:07:58] 2025-07-23 12:07:28,953 | INFO     | all payload control threads have been joined
[2025-07-23 08:07:58] 2025-07-23 12:07:29,588 | INFO     | [job] retrieve thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:29,592 | INFO     | all job control threads have been joined
[2025-07-23 08:07:58] 2025-07-23 12:07:29,668 | INFO     | [job] validate thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:29,802 | INFO     | [payload] failed_post thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:29,864 | INFO     | [job] job monitor thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:29,956 | INFO     | [data] control thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:29,957 | INFO     | [payload] control thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,127 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,130 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,279 | INFO     | [data] copytool_in thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,346 | INFO     | [payload] validate_post thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,594 | INFO     | [data] copytool_out thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,598 | INFO     | [job] control thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,982 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:30,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 08:07:58] 2025-07-23 12:07:31,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:07:58] 2025-07-23 12:07:32,520 | INFO     | [job] queue monitor thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:35,002 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:38,854 | INFO     | job.realtimelogging is not enabled
[2025-07-23 08:07:58] 2025-07-23 12:07:39,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 08:07:58] 2025-07-23 12:07:41,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139925877585728)>', '<ExcThread(monitor, started 139925353633536)>']
[2025-07-23 08:07:58] 2025-07-23 12:07:46,147 | INFO     | all workflow threads have been joined
[2025-07-23 08:07:58] 2025-07-23 12:07:46,148 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 08:07:58] 2025-07-23 12:07:46,148 | INFO     | traces error code: 0
[2025-07-23 08:07:58] 2025-07-23 12:07:46,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 08:07:58] 2025-07-23 12:07:58,446 | INFO     | PID=53300 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-23 08:07:58] 2025-07-23 12:07:58,446 | INFO     | .. there are 16 such processes running
[2025-07-23 08:07:58] 2025-07-23 12:07:58,446 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 08:07:58] 2025-07-23 12:07:58,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 08:07:58] 2025-07-23 12:07:58,447 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 08:07:58] 2025-07-23 12:07:58,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 08:07:58] 2025-07-23 12:07:58,447 | INFO     | [monitor] control thread has ended
[2025-07-23 08:07:58] 2025-07-23 12:07:58,525 [wrapper] ==== pilot stdout END ====
[2025-07-23 08:07:58] 2025-07-23 12:07:58,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 08:07:58] 2025-07-23 12:07:58,531 [wrapper] pilotpid: 53300
[2025-07-23 08:07:58] 2025-07-23 12:07:58,533 [wrapper] Pilot exit status: 0
[2025-07-23 08:07:58] 2025-07-23 12:07:58,544 [wrapper] pandaids: 6743007591
[2025-07-23 08:07:58] 2025-07-23 12:07:58,623 [wrapper] cleanup supervisor_pilot  441188 53301
[2025-07-23 08:07:58] 2025-07-23 12:07:58,626 [wrapper] Test setup, not cleaning
[2025-07-23 08:07:58] 2025-07-23 12:07:58,628 [wrapper] apfmon messages muted
[2025-07-23 08:07:58] 2025-07-23 12:07:58,630 [wrapper] ==== wrapper stdout END ====
[2025-07-23 08:07:58] 2025-07-23 12:07:58,632 [wrapper] ==== wrapper stderr END ====
[2025-07-23 08:07:58]  *** Error codes and diagnostics ***
[2025-07-23 08:07:58]     "exeErrorCode": 0,
[2025-07-23 08:07:58]     "exeErrorDiag": "",
[2025-07-23 08:07:58]     "pilotErrorCode": 0,
[2025-07-23 08:07:58]     "pilotErrorDiag": "",
[2025-07-23 08:07:58]  *** Listing of results directory ***
[2025-07-23 08:07:58] total 648356
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 22:25 pilot3.tar.gz
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 23:07 queuedata.json
[2025-07-23 08:07:58] -rwx------. 1 boincer umatlas     36292 Jul 22 23:09 runpilot2-wrapper.sh
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas       100 Jul 23 06:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 08:07:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 06:50 run_atlas
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas       105 Jul 23 06:50 job.xml
[2025-07-23 08:07:58] -rw-r--r--. 2 boincer umatlas 346492599 Jul 23 06:50 EVNT.45697539._000166.pool.root.1
[2025-07-23 08:07:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:50 start_atlas.sh
[2025-07-23 08:07:58] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 06:50 shared
[2025-07-23 08:07:58] -rw-r--r--. 2 boincer umatlas    542901 Jul 23 06:50 input.tar.gz
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas         0 Jul 23 06:50 boinc_lockfile
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas      2602 Jul 23 06:50 pandaJob.out
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas    978437 Jul 23 06:50 agis_schedconf.cvmfs.json
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas   1593041 Jul 23 06:50 agis_ddmendpoints.agis.ALL.json
[2025-07-23 08:07:58] drwx------. 4 boincer umatlas      4096 Jul 23 06:50 pilot3
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas      7174 Jul 23 08:01 init_data.xml
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas 312038547 Jul 23 08:06 HITS.45697541._004982.pool.root.1
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas       530 Jul 23 08:06 boinc_task_state.xml
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas      1030 Jul 23 08:07 memory_monitor_summary.json
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas    298012 Jul 23 08:07 log.45697541._004982.job.log.tgz.1
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas      7765 Jul 23 08:07 heartbeat.json
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 08:07 boinc_mmap_file
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas        95 Jul 23 08:07 pilot_heartbeat.json
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas       821 Jul 23 08:07 pilotlog.txt
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas    456711 Jul 23 08:07 log.45697541._004982.job.log.1
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas        27 Jul 23 08:07 wrapper_checkpoint.txt
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas       357 Jul 23 08:07 output.list
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas       620 Jul 23 08:07 runtime_log
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas    778240 Jul 23 08:07 result.tar.gz
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas      8674 Jul 23 08:07 runtime_log.err
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas       652 Jul 23 08:07 iJjNDm11ey7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvlKLDmFBtlpm.diag
[2025-07-23 08:07:58] -rw-r--r--. 1 boincer umatlas     22008 Jul 23 08:07 stderr.txt
[2025-07-23 08:07:58] HITS file was successfully produced:
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas 312038547 Jul 23 08:06 shared/HITS.pool.root.1
[2025-07-23 08:07:58]  *** Contents of shared directory: ***
[2025-07-23 08:07:58] total 644416
[2025-07-23 08:07:58] -rw-r--r--. 2 boincer umatlas 346492599 Jul 23 06:50 ATLAS.root_0
[2025-07-23 08:07:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:50 start_atlas.sh
[2025-07-23 08:07:58] -rw-r--r--. 2 boincer umatlas    542901 Jul 23 06:50 input.tar.gz
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas 312038547 Jul 23 08:06 HITS.pool.root.1
[2025-07-23 08:07:58] -rw-------. 1 boincer umatlas    778240 Jul 23 08:07 result.tar.gz
08:08:00 (49521): run_atlas exited; CPU time 34923.618726
08:08:00 (49521): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN