Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:53:52 (719998): wrapper (7.7.26015): starting
06:53:52 (719998): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 06:53:52] Arguments: --nthreads 8
[2025-07-23 06:53:52] Threads: 8
[2025-07-23 06:53:52] Checking for CVMFS
[2025-07-23 06:53:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 06:53:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 06:53:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 06:53:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 06:53:54] 2.13.0.0 112940 21377 190100 148655 0 918 40535230 40960000 26355 16776704 0 174060699 99.634 192534734 29626 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-23 06:53:54] CVMFS is ok
[2025-07-23 06:53:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 06:53:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 06:53:54] Further information can be found at the LHC@home message board.
[2025-07-23 06:53:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 06:53:54] Checking for apptainer binary...
[2025-07-23 06:53:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 06:53:54] Running /usr/bin/apptainer --version
[2025-07-23 06:53:54] apptainer version 1.4.1-1.el9
[2025-07-23 06:53:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 06:53:55] c8-7-3.aglt2.org
[2025-07-23 06:53:55] apptainer works
[2025-07-23 06:53:55] Set ATHENA_PROC_NUMBER=8
[2025-07-23 06:53:55] Set ATHENA_CORE_NUMBER=8
[2025-07-23 06:53:55] Starting ATLAS job with PandaID=6743007569
[2025-07-23 06:53:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 08:35:55]  *** The last 200 lines of the pilot log: ***
[2025-07-23 08:35:55]  storage_token=
[2025-07-23 08:35:55]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6743007569/log.45697541._004960.job.log.tgz.1
[2025-07-23 08:35:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/ab/log.45697541._004960.job.log.tgz.1
[2025-07-23 08:35:55]  workdir=None
[2025-07-23 08:35:55] ]
[2025-07-23 08:35:55] 2025-07-23 12:35:07,191 | INFO     | transferring file log.45697541._004960.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6743007569/log.45697541._004960.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 08:35:55] 2025-07-23 12:35:07,192 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6743007569/log.45697541._004960.job.log.tgz.1 /tmp/boinchome/slots/3/log.45697541._004960.job
[2025-07-23 08:35:55] 2025-07-23 12:35:07,236 | INFO     | adding to output.list: log.45697541._004960.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/ab/log.45697541._004960.job.log.tg
[2025-07-23 08:35:55] 2025-07-23 12:35:07,237 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 08:35:55] 2025-07-23 12:35:07,237 | INFO     | summary of transferred files:
[2025-07-23 08:35:55] 2025-07-23 12:35:07,237 | INFO     |  -- lfn=log.45697541._004960.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 08:35:55] 2025-07-23 12:35:07,237 | INFO     | stage-out finished correctly
[2025-07-23 08:35:55] 2025-07-23 12:35:09,221 | INFO     | monitor loop #429: job 0:6743007569 is in state 'finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:09,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:35:55] 2025-07-23 12:35:10,709 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 08:35:55] 2025-07-23 12:35:11,731 | INFO     | monitor loop #430: job 0:6743007569 is in state 'finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:11,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:35:55] 2025-07-23 12:35:11,955 | INFO     | job 6743007569 has state=finished
[2025-07-23 08:35:55] 2025-07-23 12:35:11,955 | INFO     | preparing for final server update for job 6743007569 in state='finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:11,955 | INFO     | this job has now completed (state=finished)
[2025-07-23 08:35:55] 2025-07-23 12:35:11,955 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 08:35:55] 2025-07-23 12:35:11,956 | INFO     | log transfer has been attempted: DONE
[2025-07-23 08:35:55] 2025-07-23 12:35:11,956 | INFO     | job 6743007569 has finished - writing final server update
[2025-07-23 08:35:55] 2025-07-23 12:35:11,956 | INFO     | total number of processed events: 400 (read)
[2025-07-23 08:35:55] 2025-07-23 12:35:11,960 | INFO     | executing command: lscpu
[2025-07-23 08:35:55] 2025-07-23 12:35:12,037 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 08:35:55] 2025-07-23 12:35:14,237 | INFO     | monitor loop #431: job 0:6743007569 is in state 'finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:14,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:35:55] 2025-07-23 12:35:16,746 | INFO     | monitor loop #432: job 0:6743007569 is in state 'finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:16,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:35:55] 2025-07-23 12:35:19,257 | INFO     | monitor loop #433: job 0:6743007569 is in state 'finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:19,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:35:55] 2025-07-23 12:35:20,937 | INFO     | PID=726881 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 08:35:55] 2025-07-23 12:35:20,937 | INFO     | .. there are 20 such processes running
[2025-07-23 08:35:55] 2025-07-23 12:35:21,765 | INFO     | monitor loop #434: job 0:6743007569 is in state 'finished'
[2025-07-23 08:35:55] 2025-07-23 12:35:21,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,226 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 08:35:55] 2025-07-23 12:35:22,236 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3791.397382812502
[2025-07-23 08:35:55] 2025-07-23 12:35:22,248 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6743007569/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,249 | INFO     | extracted standard info from prmon json
[2025-07-23 08:35:55] 2025-07-23 12:35:22,249 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 08:35:55] 2025-07-23 12:35:22,249 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 08:35:55] 2025-07-23 12:35:22,249 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 08:35:55] 2025-07-23 12:35:22,249 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 08:35:55] 2025-07-23 12:35:22,250 | INFO     | fitting pss+swap vs Time
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | sum of square deviations: 226022842.5
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | sum of deviations: 616345159.0000001
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | mean x: 1753271226.5
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | mean y: 2537660.066666667
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | -- intersect: -4778484562.796793
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | intersect: -4778484562.796793
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | chi2: 0.020725690216476356
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | -- intersect: -4778484562.796793
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | current memory leak: 2.73 B/s (using 90 data points, chi2=0.02)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | could have reported an average CPU frequency of 3783 MHz (7 samples)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | ..............................
[2025-07-23 08:35:55] 2025-07-23 12:35:22,251 | INFO     | . Timing measurements:
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . get job = 0 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . initial setup = 7 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . payload setup = 40 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . stage-in = 0 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . payload execution = 5916 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . stage-out = 1 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | . log creation = 0 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,252 | INFO     | ..............................
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | 
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | job summary report
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | --------------------------------------------------
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | PanDA job id: 6743007569
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | task id: 45697541
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | errors: (none)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | pilot state: finished 
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | transexitcode: 0
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | exeerrorcode: 0
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | exeerrordiag: 
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | exitcode: 0
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | exitmsg: OK
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | cpuconsumptiontime: 37075 s
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | nevents: 400
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | neventsw: 0
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | pid: 744416
[2025-07-23 08:35:55] 2025-07-23 12:35:22,368 | INFO     | pgrp: 744416
[2025-07-23 08:35:55] 2025-07-23 12:35:22,369 | INFO     | corecount: 8
[2025-07-23 08:35:55] 2025-07-23 12:35:22,369 | INFO     | event service: False
[2025-07-23 08:35:55] 2025-07-23 12:35:22,369 | INFO     | sizes: {0: 2397345, 1: 2397544, 12: 2397544, 22: 2397572, 25: 2397862, 33: 2397890, 5960: 2425044, 5961: 2434042, 5965: 2434098, 5976: 2434292}
[2025-07-23 08:35:55] 2025-07-23 12:35:22,369 | INFO     | --------------------------------------------------
[2025-07-23 08:35:55] 2025-07-23 12:35:22,369 | INFO     | 
[2025-07-23 08:35:55] 2025-07-23 12:35:22,369 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-23 08:35:55] 2025-07-23 12:35:22,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | job 6743007569 has completed (purged errors)
[2025-07-23 08:35:55] 2025-07-23 12:35:22,396 | INFO     | overall cleanup function is called
[2025-07-23 08:35:55] 2025-07-23 12:35:23,404 | INFO     | --- collectZombieJob: --- 10, [744416]
[2025-07-23 08:35:55] 2025-07-23 12:35:23,404 | INFO     | zombie collector waiting for pid 744416
[2025-07-23 08:35:55] 2025-07-23 12:35:23,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 08:35:55] 2025-07-23 12:35:23,404 | INFO     | collected zombie processes
[2025-07-23 08:35:55] 2025-07-23 12:35:23,404 | INFO     | will attempt to kill all subprocesses of pid=744416
[2025-07-23 08:35:55] 2025-07-23 12:35:23,793 | INFO     | process IDs to be killed: [744416] (in reverse order)
[2025-07-23 08:35:55] 2025-07-23 12:35:24,001 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 08:35:55] 2025-07-23 12:35:24,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 08:35:55] 2025-07-23 12:35:24,024 | INFO     | did not find any defunct processes belonging to 744416
[2025-07-23 08:35:55] 2025-07-23 12:35:24,047 | INFO     | did not find any defunct processes belonging to 744416
[2025-07-23 08:35:55] 2025-07-23 12:35:24,048 | INFO     | ready for new job
[2025-07-23 08:35:55] 2025-07-23 12:35:24,052 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 08:35:55] 2025-07-23 12:35:24,053 | INFO     | ***************************************
[2025-07-23 08:35:55] 2025-07-23 12:35:24,053 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 08:35:55] 2025-07-23 12:35:24,053 | INFO     | ***************************************
[2025-07-23 08:35:55] 2025-07-23 12:35:24,053 | INFO     | 
[2025-07-23 08:35:55] 2025-07-23 12:35:24,071 | INFO     | architecture information:
[2025-07-23 08:35:55] 2025-07-23 12:35:24,094 | INFO     | executing command: cat /etc/os-release
[2025-07-23 08:35:55] 2025-07-23 12:35:24,118 | INFO     | cat /etc/os-release:
[2025-07-23 08:35:55] NAME="CentOS Linux"
[2025-07-23 08:35:55] VERSION="7 (Core)"
[2025-07-23 08:35:55] ID="centos"
[2025-07-23 08:35:55] ID_LIKE="rhel fedora"
[2025-07-23 08:35:55] VERSION_ID="7"
[2025-07-23 08:35:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 08:35:55] ANSI_COLOR="0;31"
[2025-07-23 08:35:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 08:35:55] HOME_URL="https://www.centos.org/"
[2025-07-23 08:35:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 08:35:55] 
[2025-07-23 08:35:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 08:35:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 08:35:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 08:35:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 08:35:55] 
[2025-07-23 08:35:55] 2025-07-23 12:35:24,119 | INFO     | ***************************************
[2025-07-23 08:35:55] 2025-07-23 12:35:24,623 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-23 08:35:55] 2025-07-23 12:35:24,677 | INFO     | sufficient remaining disk space (170902159360 B)
[2025-07-23 08:35:55] 2025-07-23 12:35:24,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 08:35:55] 2025-07-23 12:35:24,677 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 08:35:55] 2025-07-23 12:35:24,678 | INFO     | update_server=False
[2025-07-23 08:35:55] 2025-07-23 12:35:24,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 08:35:55] 2025-07-23 12:35:25,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:35:55] 2025-07-23 12:35:25,278 | INFO     | aborting loop
[2025-07-23 08:35:55] 2025-07-23 12:35:25,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 08:35:55] 2025-07-23 12:35:25,436 | INFO     | all data control threads have been joined
[2025-07-23 08:35:55] 2025-07-23 12:35:25,684 | INFO     | [job] retrieve thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:25,696 | INFO     | all job control threads have been joined
[2025-07-23 08:35:55] 2025-07-23 12:35:25,733 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:25,736 | INFO     | [data] copytool_in thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:25,746 | INFO     | [job] validate thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:25,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 08:35:55] 2025-07-23 12:35:25,945 | INFO     | all payload control threads have been joined
[2025-07-23 08:35:55] 2025-07-23 12:35:26,097 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,238 | INFO     | [payload] validate_post thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,284 | INFO     | [job] job monitor thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,442 | INFO     | [data] control thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,455 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,702 | INFO     | [job] control thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,951 | INFO     | [payload] control thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:26,956 | INFO     | [payload] failed_post thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:27,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 08:35:55] 2025-07-23 12:35:27,363 | INFO     | [data] copytool_out thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:28,333 | INFO     | [job] queue monitor thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:29,832 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:34,782 | INFO     | job.realtimelogging is not enabled
[2025-07-23 08:35:55] 2025-07-23 12:35:35,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 08:35:55] 2025-07-23 12:35:37,107 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491877631808)>', '<ExcThread(monitor, started 140490779383552)>']
[2025-07-23 08:35:55] 2025-07-23 12:35:42,133 | INFO     | all workflow threads have been joined
[2025-07-23 08:35:55] 2025-07-23 12:35:42,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 08:35:55] 2025-07-23 12:35:42,134 | INFO     | traces error code: 0
[2025-07-23 08:35:55] 2025-07-23 12:35:42,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 08:35:55] 2025-07-23 12:35:55,462 | INFO     | PID=726881 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 08:35:55] 2025-07-23 12:35:55,462 | INFO     | .. there are 20 such processes running
[2025-07-23 08:35:55] 2025-07-23 12:35:55,463 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 08:35:55] 2025-07-23 12:35:55,463 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 08:35:55] 2025-07-23 12:35:55,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 08:35:55] 2025-07-23 12:35:55,463 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 08:35:55] 2025-07-23 12:35:55,463 | INFO     | [monitor] control thread has ended
[2025-07-23 08:35:55] 2025-07-23 12:35:55,567 [wrapper] ==== pilot stdout END ====
[2025-07-23 08:35:55] 2025-07-23 12:35:55,570 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 08:35:55] 2025-07-23 12:35:55,573 [wrapper] pilotpid: 726881
[2025-07-23 08:35:55] 2025-07-23 12:35:55,575 [wrapper] Pilot exit status: 0
[2025-07-23 08:35:55] 2025-07-23 12:35:55,590 [wrapper] pandaids: 6743007569
[2025-07-23 08:35:55] 2025-07-23 12:35:55,690 [wrapper] cleanup supervisor_pilot 1475101 726882
[2025-07-23 08:35:55] 2025-07-23 12:35:55,692 [wrapper] Test setup, not cleaning
[2025-07-23 08:35:55] 2025-07-23 12:35:55,693 [wrapper] apfmon messages muted
[2025-07-23 08:35:55] 2025-07-23 12:35:55,696 [wrapper] ==== wrapper stdout END ====
[2025-07-23 08:35:55] 2025-07-23 12:35:55,697 [wrapper] ==== wrapper stderr END ====
[2025-07-23 08:35:55]  *** Error codes and diagnostics ***
[2025-07-23 08:35:55]     "exeErrorCode": 0,
[2025-07-23 08:35:55]     "exeErrorDiag": "",
[2025-07-23 08:35:55]     "pilotErrorCode": 0,
[2025-07-23 08:35:55]     "pilotErrorDiag": "",
[2025-07-23 08:35:55]  *** Listing of results directory ***
[2025-07-23 08:35:55] total 642324
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 22:25 pilot3.tar.gz
[2025-07-23 08:35:55] -rwx------. 1 boincer umatlas     36292 Jul 22 23:07 runpilot2-wrapper.sh
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 23:07 queuedata.json
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas       100 Jul 23 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 08:35:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 06:53 run_atlas
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas       105 Jul 23 06:53 job.xml
[2025-07-23 08:35:55] -rw-r--r--. 2 boincer umatlas 345235677 Jul 23 06:53 EVNT.45697539._000165.pool.root.1
[2025-07-23 08:35:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:53 start_atlas.sh
[2025-07-23 08:35:55] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 06:53 shared
[2025-07-23 08:35:55] -rw-r--r--. 2 boincer umatlas    542897 Jul 23 06:53 input.tar.gz
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas         0 Jul 23 06:53 boinc_lockfile
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas      2602 Jul 23 06:53 pandaJob.out
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas    978437 Jul 23 06:54 agis_schedconf.cvmfs.json
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas   1593041 Jul 23 06:54 agis_ddmendpoints.agis.ALL.json
[2025-07-23 08:35:55] drwx------. 4 boincer umatlas      4096 Jul 23 06:54 pilot3
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas      7161 Jul 23 08:30 init_data.xml
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas 306872202 Jul 23 08:34 HITS.45697541._004960.pool.root.1
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas       530 Jul 23 08:34 boinc_task_state.xml
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas      1040 Jul 23 08:35 memory_monitor_summary.json
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas    312743 Jul 23 08:35 log.45697541._004960.job.log.tgz.1
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas      7781 Jul 23 08:35 heartbeat.json
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas        95 Jul 23 08:35 pilot_heartbeat.json
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 08:35 boinc_mmap_file
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas        27 Jul 23 08:35 wrapper_checkpoint.txt
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas       822 Jul 23 08:35 pilotlog.txt
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas    565774 Jul 23 08:35 log.45697541._004960.job.log.1
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas       357 Jul 23 08:35 output.list
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas       620 Jul 23 08:35 runtime_log
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas    901120 Jul 23 08:35 result.tar.gz
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas       655 Jul 23 08:35 VDWLDm4zey7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIjvKDmBt8gDn.diag
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas      8650 Jul 23 08:35 runtime_log.err
[2025-07-23 08:35:55] -rw-r--r--. 1 boincer umatlas     22344 Jul 23 08:35 stderr.txt
[2025-07-23 08:35:55] HITS file was successfully produced:
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas 306872202 Jul 23 08:34 shared/HITS.pool.root.1
[2025-07-23 08:35:55]  *** Contents of shared directory: ***
[2025-07-23 08:35:55] total 638260
[2025-07-23 08:35:55] -rw-r--r--. 2 boincer umatlas 345235677 Jul 23 06:53 ATLAS.root_0
[2025-07-23 08:35:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:53 start_atlas.sh
[2025-07-23 08:35:55] -rw-r--r--. 2 boincer umatlas    542897 Jul 23 06:53 input.tar.gz
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas 306872202 Jul 23 08:34 HITS.pool.root.1
[2025-07-23 08:35:55] -rw-------. 1 boincer umatlas    901120 Jul 23 08:35 result.tar.gz
08:35:57 (719998): run_atlas exited; CPU time 37206.123758
08:35:57 (719998): called boinc_finish(0)

</stderr_txt>
]]>

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