Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:21:37 (376425): wrapper (7.7.26015): starting
06:21:37 (376425): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 06:21:37] Arguments: --nthreads 8
[2025-07-23 06:21:37] Threads: 8
[2025-07-23 06:21:37] Checking for CVMFS
[2025-07-23 06:21:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 06:21:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 06:21:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 06:21:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 06:21:37] 2.13.1.0 285388 2488 75272 148655 2 188 9364190 40960001 12880 16776704 0 31718199 99.999 116606 19003 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 06:21:37] CVMFS is ok
[2025-07-23 06:21:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 06:21:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 06:21:37] Further information can be found at the LHC@home message board.
[2025-07-23 06:21:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 06:21:37] Checking for apptainer binary...
[2025-07-23 06:21:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 06:21:37] Running /usr/bin/apptainer --version
[2025-07-23 06:21:37] apptainer version 1.4.1-1.el9
[2025-07-23 06:21:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 06:21:37] c-208-36.aglt2.org
[2025-07-23 06:21:37] apptainer works
[2025-07-23 06:21:37] Set ATHENA_PROC_NUMBER=8
[2025-07-23 06:21:37] Set ATHENA_CORE_NUMBER=8
[2025-07-23 06:21:37] Starting ATLAS job with PandaID=6743006128
[2025-07-23 06:21:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 07:38:28]  *** The last 200 lines of the pilot log: ***
[2025-07-23 07:38:28]  lfn=log.45697541._004707.job.log.tgz.1
[2025-07-23 07:38:28]  mtime=0
[2025-07-23 07:38:28]  protocol_id=None
[2025-07-23 07:38:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 07:38:28]  replicas=None
[2025-07-23 07:38:28]  scope=mc23_13p6TeV
[2025-07-23 07:38:28]  status=None
[2025-07-23 07:38:28]  status_code=0
[2025-07-23 07:38:28]  storage_token=
[2025-07-23 07:38:28]  surl=/tmp/boinchome/slots/12/PanDA_Pilot-6743006128/log.45697541._004707.job.log.tgz.1
[2025-07-23 07:38:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/cf/log.45697541._004707.job.log.tgz.1
[2025-07-23 07:38:28]  workdir=None
[2025-07-23 07:38:28] ]
[2025-07-23 07:38:28] 2025-07-23 11:37:49,795 | INFO     | transferring file log.45697541._004707.job.log.tgz.1 from /tmp/boinchome/slots/12/PanDA_Pilot-6743006128/log.45697541._004707.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-23 07:38:28] 2025-07-23 11:37:49,795 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/12/PanDA_Pilot-6743006128/log.45697541._004707.job.log.tgz.1 /tmp/boinchome/slots/12/log.45697541._004707.j
[2025-07-23 07:38:28] 2025-07-23 11:37:49,814 | INFO     | adding to output.list: log.45697541._004707.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/cf/log.45697541._004707.job.log.tg
[2025-07-23 07:38:28] 2025-07-23 11:37:49,814 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 07:38:28] 2025-07-23 11:37:49,814 | INFO     | summary of transferred files:
[2025-07-23 07:38:28] 2025-07-23 11:37:49,814 | INFO     |  -- lfn=log.45697541._004707.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 07:38:28] 2025-07-23 11:37:49,815 | INFO     | stage-out finished correctly
[2025-07-23 07:38:28] 2025-07-23 11:37:49,873 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 07:38:28] 2025-07-23 11:37:50,332 | INFO     | job 6743006128 has state=finished
[2025-07-23 07:38:28] 2025-07-23 11:37:50,332 | INFO     | preparing for final server update for job 6743006128 in state='finished'
[2025-07-23 07:38:28] 2025-07-23 11:37:50,384 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-23 07:38:28] 2025-07-23 11:37:50,385 | INFO     | this job has now completed (state=finished)
[2025-07-23 07:38:28] 2025-07-23 11:37:50,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 07:38:28] 2025-07-23 11:37:50,385 | INFO     | log transfer has been attempted: DONE
[2025-07-23 07:38:28] 2025-07-23 11:37:50,385 | INFO     | job 6743006128 has finished - writing final server update
[2025-07-23 07:38:28] 2025-07-23 11:37:50,385 | INFO     | total number of processed events: 400 (read)
[2025-07-23 07:38:28] 2025-07-23 11:37:50,386 | INFO     | executing command: lscpu
[2025-07-23 07:38:28] 2025-07-23 11:37:50,444 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 07:38:28] 2025-07-23 11:37:50,910 | INFO     | monitor loop #337: job 0:6743006128 is in state 'finished'
[2025-07-23 07:38:28] 2025-07-23 11:37:50,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 07:38:28] 2025-07-23 11:37:53,413 | INFO     | monitor loop #338: job 0:6743006128 is in state 'finished'
[2025-07-23 07:38:28] 2025-07-23 11:37:53,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,274 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 07:38:28] 2025-07-23 11:37:54,279 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3774.168578124999
[2025-07-23 07:38:28] 2025-07-23 11:37:54,292 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6743006128/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,293 | INFO     | extracted standard info from prmon json
[2025-07-23 07:38:28] 2025-07-23 11:37:54,293 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 07:38:28] 2025-07-23 11:37:54,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 07:38:28] 2025-07-23 11:37:54,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 07:38:28] 2025-07-23 11:37:54,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 07:38:28] 2025-07-23 11:37:54,294 | INFO     | fitting pss+swap vs Time
[2025-07-23 07:38:28] 2025-07-23 11:37:54,294 | INFO     | sum of square deviations: 97479037.0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,294 | INFO     | sum of deviations: -3492367974.0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,294 | INFO     | mean x: 1753268477.5
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | mean y: 2639968.0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | -- intersect: 62816747175.939896
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | intersect: 62816747175.939896
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | chi2: 0.0016732609645287375
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | -- intersect: 62816747175.939896
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | current memory leak: -35.83 B/s (using 68 data points, chi2=0.00)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | could have reported an average CPU frequency of 3760 MHz (6 samples)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | ..............................
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . Timing measurements:
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . get job = 0 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . initial setup = 2 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . payload setup = 5 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . stage-in = 0 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . payload execution = 4540 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . stage-out = 0 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | . log creation = 0 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,295 | INFO     | ..............................
[2025-07-23 07:38:28] 2025-07-23 11:37:54,355 | INFO     | 
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | job summary report
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | --------------------------------------------------
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | PanDA job id: 6743006128
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | task id: 45697541
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | errors: (none)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | pilot state: finished 
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | transexitcode: 0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | exeerrorcode: 0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | exeerrordiag: 
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | exitcode: 0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | exitmsg: OK
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | cpuconsumptiontime: 33965 s
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | nevents: 400
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | neventsw: 0
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | pid: 386539
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | pgrp: 386539
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | corecount: 8
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | event service: False
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | sizes: {0: 2397517, 4: 2397779, 11: 2397807, 4549: 2424032, 4550: 2433088, 4554: 2433226}
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | --------------------------------------------------
[2025-07-23 07:38:28] 2025-07-23 11:37:54,356 | INFO     | 
[2025-07-23 07:38:28] 2025-07-23 11:37:54,357 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-07-23 07:38:28] 2025-07-23 11:37:54,377 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,377 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,377 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,377 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | job 6743006128 has completed (purged errors)
[2025-07-23 07:38:28] 2025-07-23 11:37:54,378 | INFO     | overall cleanup function is called
[2025-07-23 07:38:28] 2025-07-23 11:37:55,386 | INFO     | --- collectZombieJob: --- 10, [386539]
[2025-07-23 07:38:28] 2025-07-23 11:37:55,386 | INFO     | zombie collector waiting for pid 386539
[2025-07-23 07:38:28] 2025-07-23 11:37:55,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 07:38:28] 2025-07-23 11:37:55,387 | INFO     | collected zombie processes
[2025-07-23 07:38:28] 2025-07-23 11:37:55,387 | INFO     | will attempt to kill all subprocesses of pid=386539
[2025-07-23 07:38:28] 2025-07-23 11:37:55,432 | INFO     | PID=380017 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 07:38:28] 2025-07-23 11:37:55,432 | INFO     | .. there are 16 such processes running
[2025-07-23 07:38:28] 2025-07-23 11:37:55,755 | INFO     | process IDs to be killed: [386539] (in reverse order)
[2025-07-23 07:38:28] 2025-07-23 11:37:55,871 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 07:38:28] 2025-07-23 11:37:55,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 07:38:28] 2025-07-23 11:37:55,886 | INFO     | did not find any defunct processes belonging to 386539
[2025-07-23 07:38:28] 2025-07-23 11:37:55,898 | INFO     | did not find any defunct processes belonging to 386539
[2025-07-23 07:38:28] 2025-07-23 11:37:55,898 | INFO     | ready for new job
[2025-07-23 07:38:28] 2025-07-23 11:37:55,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 07:38:28] 2025-07-23 11:37:55,899 | INFO     | ***************************************
[2025-07-23 07:38:28] 2025-07-23 11:37:55,899 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 07:38:28] 2025-07-23 11:37:55,899 | INFO     | ***************************************
[2025-07-23 07:38:28] 2025-07-23 11:37:55,899 | INFO     | 
[2025-07-23 07:38:28] 2025-07-23 11:37:55,904 | INFO     | architecture information:
[2025-07-23 07:38:28] 2025-07-23 11:37:55,904 | INFO     | executing command: cat /etc/os-release
[2025-07-23 07:38:28] 2025-07-23 11:37:55,920 | INFO     | cat /etc/os-release:
[2025-07-23 07:38:28] NAME="CentOS Linux"
[2025-07-23 07:38:28] VERSION="7 (Core)"
[2025-07-23 07:38:28] ID="centos"
[2025-07-23 07:38:28] ID_LIKE="rhel fedora"
[2025-07-23 07:38:28] VERSION_ID="7"
[2025-07-23 07:38:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 07:38:28] ANSI_COLOR="0;31"
[2025-07-23 07:38:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 07:38:28] HOME_URL="https://www.centos.org/"
[2025-07-23 07:38:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 07:38:28] 
[2025-07-23 07:38:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 07:38:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 07:38:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 07:38:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 07:38:28] 
[2025-07-23 07:38:28] 2025-07-23 11:37:55,922 | INFO     | ***************************************
[2025-07-23 07:38:28] 2025-07-23 11:37:56,425 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-07-23 07:38:28] 2025-07-23 11:37:56,442 | INFO     | sufficient remaining disk space (160473022464 B)
[2025-07-23 07:38:28] 2025-07-23 11:37:56,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 07:38:28] 2025-07-23 11:37:56,442 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 07:38:28] 2025-07-23 11:37:56,442 | INFO     | update_server=False
[2025-07-23 07:38:28] 2025-07-23 11:37:56,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 07:38:28] 2025-07-23 11:37:56,442 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 07:38:28] 2025-07-23 11:37:56,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 07:38:28] 2025-07-23 11:37:56,921 | INFO     | aborting loop
[2025-07-23 07:38:28] 2025-07-23 11:37:56,923 | INFO     | all data control threads have been joined
[2025-07-23 07:38:28] 2025-07-23 11:37:57,299 | INFO     | all job control threads have been joined
[2025-07-23 07:38:28] 2025-07-23 11:37:57,447 | INFO     | [job] retrieve thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:57,476 | INFO     | [job] validate thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:57,561 | INFO     | [payload] validate_post thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:57,576 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:57,590 | INFO     | all payload control threads have been joined
[2025-07-23 07:38:28] 2025-07-23 11:37:57,812 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:57,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 07:38:28] 2025-07-23 11:37:57,926 | INFO     | [job] job monitor thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:57,928 | INFO     | [data] control thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:58,236 | INFO     | [payload] failed_post thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:58,304 | INFO     | [job] control thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:58,379 | INFO     | [data] copytool_in thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:58,508 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:58,596 | INFO     | [payload] control thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:58,915 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:37:59,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 07:38:28] 2025-07-23 11:37:59,888 | INFO     | [data] copytool_out thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:38:00,369 | INFO     | [job] queue monitor thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:38:00,449 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 07:38:28] 2025-07-23 11:38:02,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228379137856)>', '<ExcThread(monitor, started 140228031395584)>']
[2025-07-23 07:38:28] 2025-07-23 11:38:07,058 | INFO     | all workflow threads have been joined
[2025-07-23 07:38:28] 2025-07-23 11:38:07,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 07:38:28] 2025-07-23 11:38:07,059 | INFO     | traces error code: 0
[2025-07-23 07:38:28] 2025-07-23 11:38:07,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 07:38:28] 2025-07-23 11:38:27,940 | INFO     | PID=380017 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 07:38:28] 2025-07-23 11:38:27,940 | INFO     | .. there are 16 such processes running
[2025-07-23 07:38:28] 2025-07-23 11:38:27,941 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 07:38:28] 2025-07-23 11:38:27,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 07:38:28] 2025-07-23 11:38:27,941 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 07:38:28] 2025-07-23 11:38:27,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 07:38:28] 2025-07-23 11:38:27,941 | INFO     | [monitor] control thread has ended
[2025-07-23 07:38:28] 2025-07-23 11:38:28,067 [wrapper] ==== pilot stdout END ====
[2025-07-23 07:38:28] 2025-07-23 11:38:28,070 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 07:38:28] 2025-07-23 11:38:28,073 [wrapper] pilotpid: 380017
[2025-07-23 07:38:28] 2025-07-23 11:38:28,076 [wrapper] Pilot exit status: 0
[2025-07-23 07:38:28] 2025-07-23 11:38:28,087 [wrapper] pandaids: 6743006128
[2025-07-23 07:38:28] 2025-07-23 11:38:28,172 [wrapper] cleanup supervisor_pilot  765049 380018
[2025-07-23 07:38:28] 2025-07-23 11:38:28,175 [wrapper] Test setup, not cleaning
[2025-07-23 07:38:28] 2025-07-23 11:38:28,178 [wrapper] apfmon messages muted
[2025-07-23 07:38:28] 2025-07-23 11:38:28,181 [wrapper] ==== wrapper stdout END ====
[2025-07-23 07:38:28] 2025-07-23 11:38:28,183 [wrapper] ==== wrapper stderr END ====
[2025-07-23 07:38:28]  *** Error codes and diagnostics ***
[2025-07-23 07:38:28]     "exeErrorCode": 0,
[2025-07-23 07:38:28]     "exeErrorDiag": "",
[2025-07-23 07:38:28]     "pilotErrorCode": 0,
[2025-07-23 07:38:28]     "pilotErrorDiag": "",
[2025-07-23 07:38:28]  *** Listing of results directory ***
[2025-07-23 07:38:28] total 648052
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 22:25 pilot3.tar.gz
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 22:50 queuedata.json
[2025-07-23 07:38:28] -rwx------. 1 boincer umatlas     36292 Jul 22 22:51 runpilot2-wrapper.sh
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas       100 Jul 23 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 07:38:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 06:21 run_atlas
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas       105 Jul 23 06:21 job.xml
[2025-07-23 07:38:28] -rw-r--r--. 2 boincer umatlas 348097903 Jul 23 06:21 EVNT.45697539._000155.pool.root.1
[2025-07-23 07:38:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:21 start_atlas.sh
[2025-07-23 07:38:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 06:21 shared
[2025-07-23 07:38:28] -rw-r--r--. 2 boincer umatlas    542901 Jul 23 06:21 input.tar.gz
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas         0 Jul 23 06:21 boinc_lockfile
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas      2602 Jul 23 06:21 pandaJob.out
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas    978437 Jul 23 06:21 agis_schedconf.cvmfs.json
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas   1593041 Jul 23 06:21 agis_ddmendpoints.agis.ALL.json
[2025-07-23 07:38:28] drwx------. 4 boincer umatlas      4096 Jul 23 06:21 pilot3
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas      7174 Jul 23 07:36 init_data.xml
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas 310133630 Jul 23 07:37 HITS.45697541._004707.pool.root.1
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas       529 Jul 23 07:37 boinc_task_state.xml
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas      1031 Jul 23 07:37 memory_monitor_summary.json
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas    295526 Jul 23 07:37 log.45697541._004707.job.log.tgz.1
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas      7768 Jul 23 07:37 heartbeat.json
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas        27 Jul 23 07:38 wrapper_checkpoint.txt
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 07:38 boinc_mmap_file
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas        95 Jul 23 07:38 pilot_heartbeat.json
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas       822 Jul 23 07:38 pilotlog.txt
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas    451964 Jul 23 07:38 log.45697541._004707.job.log.1
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas       357 Jul 23 07:38 output.list
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas       620 Jul 23 07:38 runtime_log
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas    768000 Jul 23 07:38 result.tar.gz
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas       652 Jul 23 07:38 xYBLDmMley7n9Rq4apOajLDm4fhM0noT9bVof3QYDmAivKDmA7NNRo.diag
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas      8674 Jul 23 07:38 runtime_log.err
[2025-07-23 07:38:28] -rw-r--r--. 1 boincer umatlas     21713 Jul 23 07:38 stderr.txt
[2025-07-23 07:38:28] HITS file was successfully produced:
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas 310133630 Jul 23 07:37 shared/HITS.pool.root.1
[2025-07-23 07:38:28]  *** Contents of shared directory: ***
[2025-07-23 07:38:28] total 644116
[2025-07-23 07:38:28] -rw-r--r--. 2 boincer umatlas 348097903 Jul 23 06:21 ATLAS.root_0
[2025-07-23 07:38:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:21 start_atlas.sh
[2025-07-23 07:38:28] -rw-r--r--. 2 boincer umatlas    542901 Jul 23 06:21 input.tar.gz
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas 310133630 Jul 23 07:37 HITS.pool.root.1
[2025-07-23 07:38:28] -rw-------. 1 boincer umatlas    768000 Jul 23 07:38 result.tar.gz
07:38:30 (376425): run_atlas exited; CPU time 34088.210507
07:38:30 (376425): called boinc_finish(0)

</stderr_txt>
]]>

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