Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:20:58 (13219): wrapper (7.7.26015): starting
06:20:58 (13219): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 06:20:58] Arguments: --nthreads 8
[2025-07-23 06:20:58] Threads: 8
[2025-07-23 06:20:58] Checking for CVMFS
[2025-07-23 06:20:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 06:20:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 06:20:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 06:20:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 06:20:58] 2.11.2.0 3213 511051 243556 148655 2 57 18513160 20275201 917 130560 0 168394902 99.988 22325624 19673 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 06:20:58] CVMFS is ok
[2025-07-23 06:20:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 06:20:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 06:20:58] Further information can be found at the LHC@home message board.
[2025-07-23 06:20:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 06:20:58] Checking for apptainer binary...
[2025-07-23 06:20:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 06:20:58] Running /usr/bin/apptainer --version
[2025-07-23 06:20:58] apptainer version 1.3.2-1.el7
[2025-07-23 06:20:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 06:20:59] c-205-38.aglt2.org
[2025-07-23 06:20:59] apptainer works
[2025-07-23 06:20:59] Set ATHENA_PROC_NUMBER=8
[2025-07-23 06:20:59] Set ATHENA_CORE_NUMBER=8
[2025-07-23 06:20:59] Starting ATLAS job with PandaID=6743006111
[2025-07-23 06:20:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 07:46:44]  *** The last 200 lines of the pilot log: ***
[2025-07-23 07:46:44]  replicas=None
[2025-07-23 07:46:44]  scope=mc23_13p6TeV
[2025-07-23 07:46:44]  status=None
[2025-07-23 07:46:44]  status_code=0
[2025-07-23 07:46:44]  storage_token=
[2025-07-23 07:46:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6743006111/log.45697541._004690.job.log.tgz.1
[2025-07-23 07:46:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/fc/log.45697541._004690.job.log.tgz.1
[2025-07-23 07:46:44]  workdir=None
[2025-07-23 07:46:44] ]
[2025-07-23 07:46:44] 2025-07-23 11:46:06,406 | INFO     | transferring file log.45697541._004690.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6743006111/log.45697541._004690.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 07:46:44] 2025-07-23 11:46:06,406 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6743006111/log.45697541._004690.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697541._004690.job
[2025-07-23 07:46:44] 2025-07-23 11:46:06,419 | INFO     | adding to output.list: log.45697541._004690.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/fc/log.45697541._004690.job.log.tg
[2025-07-23 07:46:44] 2025-07-23 11:46:06,420 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 07:46:44] 2025-07-23 11:46:06,421 | INFO     | summary of transferred files:
[2025-07-23 07:46:44] 2025-07-23 11:46:06,421 | INFO     |  -- lfn=log.45697541._004690.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 07:46:44] 2025-07-23 11:46:06,421 | INFO     | stage-out finished correctly
[2025-07-23 07:46:44] 2025-07-23 11:46:06,494 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 07:46:44] 2025-07-23 11:46:06,636 | INFO     | monitor loop #383: job 0:6743006111 is in state 'finished'
[2025-07-23 07:46:44] 2025-07-23 11:46:06,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 07:46:44] 2025-07-23 11:46:08,580 | INFO     | job 6743006111 has state=finished
[2025-07-23 07:46:44] 2025-07-23 11:46:08,580 | INFO     | preparing for final server update for job 6743006111 in state='finished'
[2025-07-23 07:46:44] 2025-07-23 11:46:08,581 | INFO     | this job has now completed (state=finished)
[2025-07-23 07:46:44] 2025-07-23 11:46:08,581 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 07:46:44] 2025-07-23 11:46:08,581 | INFO     | log transfer has been attempted: DONE
[2025-07-23 07:46:44] 2025-07-23 11:46:08,581 | INFO     | job 6743006111 has finished - writing final server update
[2025-07-23 07:46:44] 2025-07-23 11:46:08,582 | INFO     | total number of processed events: 400 (read)
[2025-07-23 07:46:44] 2025-07-23 11:46:08,583 | INFO     | executing command: lscpu
[2025-07-23 07:46:44] 2025-07-23 11:46:08,612 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 07:46:44] 2025-07-23 11:46:09,139 | INFO     | monitor loop #384: job 0:6743006111 is in state 'finished'
[2025-07-23 07:46:44] 2025-07-23 11:46:09,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 07:46:44] 2025-07-23 11:46:10,270 | INFO     | PID=16879 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-23 07:46:44] 2025-07-23 11:46:10,270 | INFO     | .. there are 2 such processes running
[2025-07-23 07:46:44] 2025-07-23 11:46:11,643 | INFO     | monitor loop #385: job 0:6743006111 is in state 'finished'
[2025-07-23 07:46:44] 2025-07-23 11:46:11,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,872 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-23 07:46:44] 2025-07-23 11:46:11,875 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2735.0582499999996
[2025-07-23 07:46:44] 2025-07-23 11:46:11,877 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6743006111/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,877 | INFO     | extracted standard info from prmon json
[2025-07-23 07:46:44] 2025-07-23 11:46:11,877 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 07:46:44] 2025-07-23 11:46:11,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 07:46:44] 2025-07-23 11:46:11,878 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 07:46:44] 2025-07-23 11:46:11,878 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 07:46:44] 2025-07-23 11:46:11,879 | INFO     | fitting pss+swap vs Time
[2025-07-23 07:46:44] 2025-07-23 11:46:11,879 | INFO     | sum of square deviations: 141539398.0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | sum of deviations: -11965710102.0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | mean x: 1753268710.0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | mean y: 2744781.7662337665
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | -- intersect: 148223702417.6572
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | intersect: 148223702417.6572
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | chi2: 0.067147882092305
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | -- intersect: 148223702417.6572
[2025-07-23 07:46:44] 2025-07-23 11:46:11,880 | INFO     | current memory leak: -84.54 B/s (using 77 data points, chi2=0.07)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | could have reported an average CPU frequency of 2996 MHz (6 samples)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | ..............................
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . Timing measurements:
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . get job = 0 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . initial setup = 2 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . payload setup = 4 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . stage-in = 0 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . payload execution = 5077 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . stage-out = 0 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | . log creation = 0 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,881 | INFO     | ..............................
[2025-07-23 07:46:44] 2025-07-23 11:46:11,948 | INFO     | 
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | job summary report
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | --------------------------------------------------
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | PanDA job id: 6743006111
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | task id: 45697541
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | errors: (none)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 07:46:44] 2025-07-23 11:46:11,949 | INFO     | pilot state: finished 
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | transexitcode: 0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | exeerrorcode: 0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | exeerrordiag: 
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | exitcode: 0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | exitmsg: OK
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | cpuconsumptiontime: 38135 s
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | nevents: 400
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | neventsw: 0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,950 | INFO     | pid: 23331
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | pgrp: 23331
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | corecount: 8
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | event service: False
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | sizes: {0: 2397345, 1: 2397544, 3: 2397806, 11: 2397834, 5085: 2424278, 5086: 2433460, 5091: 2433598}
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | --------------------------------------------------
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | 
[2025-07-23 07:46:44] 2025-07-23 11:46:11,951 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-23 07:46:44] 2025-07-23 11:46:11,969 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,971 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 07:46:44] 2025-07-23 11:46:11,972 | INFO     | job 6743006111 has completed (purged errors)
[2025-07-23 07:46:44] 2025-07-23 11:46:11,972 | INFO     | overall cleanup function is called
[2025-07-23 07:46:44] 2025-07-23 11:46:12,979 | INFO     | --- collectZombieJob: --- 10, [23331]
[2025-07-23 07:46:44] 2025-07-23 11:46:12,980 | INFO     | zombie collector waiting for pid 23331
[2025-07-23 07:46:44] 2025-07-23 11:46:12,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 07:46:44] 2025-07-23 11:46:12,980 | INFO     | collected zombie processes
[2025-07-23 07:46:44] 2025-07-23 11:46:12,980 | INFO     | will attempt to kill all subprocesses of pid=23331
[2025-07-23 07:46:44] 2025-07-23 11:46:13,069 | INFO     | process IDs to be killed: [23331] (in reverse order)
[2025-07-23 07:46:44] 2025-07-23 11:46:13,109 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 07:46:44] 2025-07-23 11:46:13,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 07:46:44] 2025-07-23 11:46:13,111 | INFO     | did not find any defunct processes belonging to 23331
[2025-07-23 07:46:44] 2025-07-23 11:46:13,113 | INFO     | did not find any defunct processes belonging to 23331
[2025-07-23 07:46:44] 2025-07-23 11:46:13,113 | INFO     | ready for new job
[2025-07-23 07:46:44] 2025-07-23 11:46:13,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 07:46:44] 2025-07-23 11:46:13,114 | INFO     | ***************************************
[2025-07-23 07:46:44] 2025-07-23 11:46:13,114 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 07:46:44] 2025-07-23 11:46:13,114 | INFO     | ***************************************
[2025-07-23 07:46:44] 2025-07-23 11:46:13,114 | INFO     | 
[2025-07-23 07:46:44] 2025-07-23 11:46:13,115 | INFO     | architecture information:
[2025-07-23 07:46:44] 2025-07-23 11:46:13,115 | INFO     | executing command: cat /etc/os-release
[2025-07-23 07:46:44] 2025-07-23 11:46:13,125 | INFO     | cat /etc/os-release:
[2025-07-23 07:46:44] NAME="CentOS Linux"
[2025-07-23 07:46:44] VERSION="7 (Core)"
[2025-07-23 07:46:44] ID="centos"
[2025-07-23 07:46:44] ID_LIKE="rhel fedora"
[2025-07-23 07:46:44] VERSION_ID="7"
[2025-07-23 07:46:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 07:46:44] ANSI_COLOR="0;31"
[2025-07-23 07:46:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 07:46:44] HOME_URL="https://www.centos.org/"
[2025-07-23 07:46:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 07:46:44] 
[2025-07-23 07:46:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 07:46:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 07:46:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 07:46:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 07:46:44] 
[2025-07-23 07:46:44] 2025-07-23 11:46:13,125 | INFO     | ***************************************
[2025-07-23 07:46:44] 2025-07-23 11:46:13,628 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-23 07:46:44] 2025-07-23 11:46:13,644 | INFO     | sufficient remaining disk space (32199671808 B)
[2025-07-23 07:46:44] 2025-07-23 11:46:13,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 07:46:44] 2025-07-23 11:46:13,644 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 07:46:44] 2025-07-23 11:46:13,644 | INFO     | update_server=False
[2025-07-23 07:46:44] 2025-07-23 11:46:13,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 07:46:44] 2025-07-23 11:46:13,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 07:46:44] 2025-07-23 11:46:13,821 | INFO     | all payload control threads have been joined
[2025-07-23 07:46:44] 2025-07-23 11:46:14,147 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-23 07:46:44] 2025-07-23 11:46:14,147 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-23 07:46:44] 2025-07-23 11:46:14,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 07:46:44] 2025-07-23 11:46:14,147 | INFO     | will abort loop
[2025-07-23 07:46:44] 2025-07-23 11:46:14,304 | INFO     | all data control threads have been joined
[2025-07-23 07:46:44] 2025-07-23 11:46:14,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 07:46:44] 2025-07-23 11:46:14,646 | INFO     | [job] queue monitor thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:14,649 | INFO     | [job] retrieve thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:14,700 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:14,826 | INFO     | [payload] control thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:14,944 | INFO     | all job control threads have been joined
[2025-07-23 07:46:44] 2025-07-23 11:46:15,130 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,151 | INFO     | [job] job monitor thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,254 | INFO     | [payload] failed_post thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,309 | INFO     | [data] control thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,371 | INFO     | [data] copytool_in thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,727 | INFO     | [job] validate thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,793 | INFO     | [payload] validate_post thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,942 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:15,950 | INFO     | [job] control thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:16,510 | INFO     | [data] copytool_out thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:17,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 07:46:44] 2025-07-23 11:46:21,091 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:24,090 | INFO     | job.realtimelogging is not enabled
[2025-07-23 07:46:44] 2025-07-23 11:46:25,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 07:46:44] 2025-07-23 11:46:26,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800039765824)>', '<ExcThread(monitor, started 139799742625536)>']
[2025-07-23 07:46:44] 2025-07-23 11:46:31,230 | INFO     | all workflow threads have been joined
[2025-07-23 07:46:44] 2025-07-23 11:46:31,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 07:46:44] 2025-07-23 11:46:31,230 | INFO     | traces error code: 0
[2025-07-23 07:46:44] 2025-07-23 11:46:31,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 07:46:44] 2025-07-23 11:46:44,464 | INFO     | PID=16879 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-23 07:46:44] 2025-07-23 11:46:44,464 | INFO     | .. there are 2 such processes running
[2025-07-23 07:46:44] 2025-07-23 11:46:44,464 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 07:46:44] 2025-07-23 11:46:44,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 07:46:44] 2025-07-23 11:46:44,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 07:46:44] 2025-07-23 11:46:44,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 07:46:44] 2025-07-23 11:46:44,465 | INFO     | [monitor] control thread has ended
[2025-07-23 07:46:44] 2025-07-23 11:46:44,551 [wrapper] ==== pilot stdout END ====
[2025-07-23 07:46:44] 2025-07-23 11:46:44,554 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 07:46:44] 2025-07-23 11:46:44,557 [wrapper] pilotpid: 16879
[2025-07-23 07:46:44] 2025-07-23 11:46:44,559 [wrapper] Pilot exit status: 0
[2025-07-23 07:46:44] 2025-07-23 11:46:44,569 [wrapper] pandaids: 6743006111
[2025-07-23 07:46:44] 2025-07-23 11:46:44,597 [wrapper] cleanup supervisor_pilot  7412 16880
[2025-07-23 07:46:44] 2025-07-23 11:46:44,599 [wrapper] Test setup, not cleaning
[2025-07-23 07:46:44] 2025-07-23 11:46:44,602 [wrapper] apfmon messages muted
[2025-07-23 07:46:44] 2025-07-23 11:46:44,604 [wrapper] ==== wrapper stdout END ====
[2025-07-23 07:46:44] 2025-07-23 11:46:44,607 [wrapper] ==== wrapper stderr END ====
[2025-07-23 07:46:44]  *** Error codes and diagnostics ***
[2025-07-23 07:46:44]     "exeErrorCode": 0,
[2025-07-23 07:46:44]     "exeErrorDiag": "",
[2025-07-23 07:46:44]     "pilotErrorCode": 0,
[2025-07-23 07:46:44]     "pilotErrorDiag": "",
[2025-07-23 07:46:44]  *** Listing of results directory ***
[2025-07-23 07:46:44] total 634988
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas    530466 Jul 22 22:25 pilot3.tar.gz
[2025-07-23 07:46:44] -rwx------ 1 boincer umatlas     36292 Jul 22 22:50 runpilot2-wrapper.sh
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas      5112 Jul 22 22:50 queuedata.json
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas       100 Jul 23 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 07:46:44] -rwxr-xr-x 1 boincer umatlas      7986 Jul 23 06:20 run_atlas
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas       105 Jul 23 06:20 job.xml
[2025-07-23 07:46:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 23 06:20 start_atlas.sh
[2025-07-23 07:46:44] drwxrwx--x 2 boincer umatlas      4096 Jul 23 06:20 shared
[2025-07-23 07:46:44] -rw-r--r-- 2 boincer umatlas    542897 Jul 23 06:20 input.tar.gz
[2025-07-23 07:46:44] -rw-r--r-- 2 boincer umatlas 344536328 Jul 23 06:20 EVNT.45697539._000154.pool.root.1
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas         0 Jul 23 06:20 boinc_lockfile
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas      2602 Jul 23 06:20 pandaJob.out
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas    978437 Jul 23 06:21 agis_schedconf.cvmfs.json
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas   1593041 Jul 23 06:21 agis_ddmendpoints.agis.ALL.json
[2025-07-23 07:46:44] drwx------ 4 boincer umatlas      4096 Jul 23 06:21 pilot3
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas      6050 Jul 23 07:40 init_data.xml
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas 300184183 Jul 23 07:45 HITS.45697541._004690.pool.root.1
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas        95 Jul 23 07:45 pilot_heartbeat.json
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas       529 Jul 23 07:45 boinc_task_state.xml
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas      1048 Jul 23 07:46 memory_monitor_summary.json
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas    310890 Jul 23 07:46 log.45697541._004690.job.log.tgz.1
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas      7834 Jul 23 07:46 heartbeat.json
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas      8192 Jul 23 07:46 boinc_mmap_file
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas        27 Jul 23 07:46 wrapper_checkpoint.txt
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas       820 Jul 23 07:46 pilotlog.txt
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas    504518 Jul 23 07:46 log.45697541._004690.job.log.1
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas       357 Jul 23 07:46 output.list
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas       620 Jul 23 07:46 runtime_log
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas    839680 Jul 23 07:46 result.tar.gz
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas       658 Jul 23 07:46 YkVKDm5jey7n9Rq4apOajLDm4fhM0noT9bVof3QYDm6hvKDmsgj8Jo.diag
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas      8660 Jul 23 07:46 runtime_log.err
[2025-07-23 07:46:44] -rw-r--r-- 1 boincer umatlas     21881 Jul 23 07:46 stderr.txt
[2025-07-23 07:46:44] HITS file was successfully produced:
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas 300184183 Jul 23 07:45 shared/HITS.pool.root.1
[2025-07-23 07:46:44]  *** Contents of shared directory: ***
[2025-07-23 07:46:44] total 630988
[2025-07-23 07:46:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 23 06:20 start_atlas.sh
[2025-07-23 07:46:44] -rw-r--r-- 2 boincer umatlas    542897 Jul 23 06:20 input.tar.gz
[2025-07-23 07:46:44] -rw-r--r-- 2 boincer umatlas 344536328 Jul 23 06:20 ATLAS.root_0
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas 300184183 Jul 23 07:45 HITS.pool.root.1
[2025-07-23 07:46:44] -rw------- 1 boincer umatlas    839680 Jul 23 07:46 result.tar.gz
07:46:46 (13219): run_atlas exited; CPU time 38085.977325
07:46:46 (13219): called boinc_finish(0)

</stderr_txt>
]]>

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