Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:08:41 (315180): wrapper (7.7.26015): starting
06:08:41 (315180): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 06:08:41] Arguments: --nthreads 8
[2025-07-23 06:08:41] Threads: 8
[2025-07-23 06:08:41] Checking for CVMFS
[2025-07-23 06:08:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 06:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 06:08:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 06:08:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 06:08:41] 2.13.1.0 285388 2475 77496 148654 3 11 9344804 40960000 12879 16776704 0 31572019 99.999 115312 18844 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-23 06:08:41] CVMFS is ok
[2025-07-23 06:08:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 06:08:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 06:08:41] Further information can be found at the LHC@home message board.
[2025-07-23 06:08:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 06:08:41] Checking for apptainer binary...
[2025-07-23 06:08:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 06:08:41] Running /usr/bin/apptainer --version
[2025-07-23 06:08:41] apptainer version 1.4.1-1.el9
[2025-07-23 06:08:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 06:08:41] c-208-36.aglt2.org
[2025-07-23 06:08:41] apptainer works
[2025-07-23 06:08:41] Set ATHENA_PROC_NUMBER=8
[2025-07-23 06:08:41] Set ATHENA_CORE_NUMBER=8
[2025-07-23 06:08:41] Starting ATLAS job with PandaID=6743006054
[2025-07-23 06:08:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 07:27:43]  *** The last 200 lines of the pilot log: ***
[2025-07-23 07:27:43]  lfn=log.45697541._004633.job.log.tgz.1
[2025-07-23 07:27:43]  mtime=0
[2025-07-23 07:27:43]  protocol_id=None
[2025-07-23 07:27:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 07:27:43]  replicas=None
[2025-07-23 07:27:43]  scope=mc23_13p6TeV
[2025-07-23 07:27:43]  status=None
[2025-07-23 07:27:43]  status_code=0
[2025-07-23 07:27:43]  storage_token=
[2025-07-23 07:27:43]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6743006054/log.45697541._004633.job.log.tgz.1
[2025-07-23 07:27:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/f5/log.45697541._004633.job.log.tgz.1
[2025-07-23 07:27:43]  workdir=None
[2025-07-23 07:27:43] ]
[2025-07-23 07:27:43] 2025-07-23 11:27:02,208 | INFO     | transferring file log.45697541._004633.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6743006054/log.45697541._004633.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-23 07:27:43] 2025-07-23 11:27:02,208 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6743006054/log.45697541._004633.job.log.tgz.1 /tmp/boinchome/slots/8/log.45697541._004633.job
[2025-07-23 07:27:43] 2025-07-23 11:27:02,228 | INFO     | adding to output.list: log.45697541._004633.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/f5/log.45697541._004633.job.log.tg
[2025-07-23 07:27:43] 2025-07-23 11:27:02,229 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 07:27:43] 2025-07-23 11:27:02,229 | INFO     | summary of transferred files:
[2025-07-23 07:27:43] 2025-07-23 11:27:02,229 | INFO     |  -- lfn=log.45697541._004633.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 07:27:43] 2025-07-23 11:27:02,229 | INFO     | stage-out finished correctly
[2025-07-23 07:27:43] 2025-07-23 11:27:04,838 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 07:27:43] 2025-07-23 11:27:06,645 | WARNING  | process 326570 can no longer be monitored (due to stat problems) - aborting
[2025-07-23 07:27:43] 2025-07-23 11:27:06,646 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6743006054/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 07:27:43] 2025-07-23 11:27:06,898 | INFO     | job 6743006054 has state=finished
[2025-07-23 07:27:43] 2025-07-23 11:27:06,899 | INFO     | preparing for final server update for job 6743006054 in state='finished'
[2025-07-23 07:27:43] 2025-07-23 11:27:06,899 | INFO     | this job has now completed (state=finished)
[2025-07-23 07:27:43] 2025-07-23 11:27:06,899 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 07:27:43] 2025-07-23 11:27:06,899 | INFO     | log transfer has been attempted: DONE
[2025-07-23 07:27:43] 2025-07-23 11:27:06,900 | INFO     | job 6743006054 has finished - writing final server update
[2025-07-23 07:27:43] 2025-07-23 11:27:06,900 | INFO     | total number of processed events: 400 (read)
[2025-07-23 07:27:43] 2025-07-23 11:27:06,900 | INFO     | executing command: lscpu
[2025-07-23 07:27:43] 2025-07-23 11:27:06,959 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 07:27:43] 2025-07-23 11:27:07,002 | INFO     | number of running child processes to parent process 326570: 1
[2025-07-23 07:27:43] 2025-07-23 11:27:07,002 | INFO     | maximum number of monitored processes: 6
[2025-07-23 07:27:43] 2025-07-23 11:27:09,505 | INFO     | monitor loop #346: job 0:6743006054 is in state 'finished'
[2025-07-23 07:27:43] 2025-07-23 11:27:09,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,780 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-23 07:27:43] 2025-07-23 11:27:10,785 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3782.82221875
[2025-07-23 07:27:43] 2025-07-23 11:27:10,798 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6743006054/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,798 | INFO     | extracted standard info from prmon json
[2025-07-23 07:27:43] 2025-07-23 11:27:10,798 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 07:27:43] 2025-07-23 11:27:10,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 07:27:43] 2025-07-23 11:27:10,799 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 07:27:43] 2025-07-23 11:27:10,799 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | fitting pss+swap vs Time
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | sum of square deviations: 106336877.5
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | sum of deviations: -953476482.0000006
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | mean x: 1753267763.5
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | mean y: 2593889.685714286
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | -- intersect: 15723382561.009914
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | intersect: 15723382561.009914
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | chi2: 0.039138277541459134
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | -- intersect: 15723382561.009914
[2025-07-23 07:27:43] 2025-07-23 11:27:10,800 | INFO     | current memory leak: -8.97 B/s (using 70 data points, chi2=0.04)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | could have reported an average CPU frequency of 3772 MHz (6 samples)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | ..............................
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . Timing measurements:
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . get job = 0 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . initial setup = 2 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . payload setup = 5 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . stage-in = 0 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . payload execution = 4668 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . stage-out = 0 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | . log creation = 0 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,801 | INFO     | ..............................
[2025-07-23 07:27:43] 2025-07-23 11:27:10,858 | INFO     | 
[2025-07-23 07:27:43] 2025-07-23 11:27:10,858 | INFO     | job summary report
[2025-07-23 07:27:43] 2025-07-23 11:27:10,858 | INFO     | --------------------------------------------------
[2025-07-23 07:27:43] 2025-07-23 11:27:10,858 | INFO     | PanDA job id: 6743006054
[2025-07-23 07:27:43] 2025-07-23 11:27:10,858 | INFO     | task id: 45697541
[2025-07-23 07:27:43] 2025-07-23 11:27:10,858 | INFO     | errors: (none)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | pilot state: finished 
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | transexitcode: 0
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | exeerrorcode: 0
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | exeerrordiag: 
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | exitcode: 0
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | exitmsg: OK
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | cpuconsumptiontime: 34640 s
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | nevents: 400
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | neventsw: 0
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | pid: 326570
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | pgrp: 326570
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | corecount: 8
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | event service: False
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | sizes: {0: 2397336, 1: 2397535, 4: 2397797, 11: 2397825, 4677: 2433103, 4680: 2433103, 4686: 2433425}
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | --------------------------------------------------
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | 
[2025-07-23 07:27:43] 2025-07-23 11:27:10,859 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-23 07:27:43] 2025-07-23 11:27:10,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,877 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 07:27:43] 2025-07-23 11:27:10,878 | INFO     | job 6743006054 has completed (purged errors)
[2025-07-23 07:27:43] 2025-07-23 11:27:10,878 | INFO     | overall cleanup function is called
[2025-07-23 07:27:43] 2025-07-23 11:27:11,886 | INFO     | --- collectZombieJob: --- 10, [326570]
[2025-07-23 07:27:43] 2025-07-23 11:27:11,886 | INFO     | zombie collector waiting for pid 326570
[2025-07-23 07:27:43] 2025-07-23 11:27:11,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 07:27:43] 2025-07-23 11:27:11,887 | INFO     | collected zombie processes
[2025-07-23 07:27:43] 2025-07-23 11:27:11,887 | INFO     | will attempt to kill all subprocesses of pid=326570
[2025-07-23 07:27:43] 2025-07-23 11:27:12,231 | INFO     | process IDs to be killed: [326570] (in reverse order)
[2025-07-23 07:27:43] 2025-07-23 11:27:12,343 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 07:27:43] 2025-07-23 11:27:12,343 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 07:27:43] 2025-07-23 11:27:12,357 | INFO     | did not find any defunct processes belonging to 326570
[2025-07-23 07:27:43] 2025-07-23 11:27:12,368 | INFO     | did not find any defunct processes belonging to 326570
[2025-07-23 07:27:43] 2025-07-23 11:27:12,368 | INFO     | ready for new job
[2025-07-23 07:27:43] 2025-07-23 11:27:12,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 07:27:43] 2025-07-23 11:27:12,369 | INFO     | ***************************************
[2025-07-23 07:27:43] 2025-07-23 11:27:12,369 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 07:27:43] 2025-07-23 11:27:12,369 | INFO     | ***************************************
[2025-07-23 07:27:43] 2025-07-23 11:27:12,369 | INFO     | 
[2025-07-23 07:27:43] 2025-07-23 11:27:12,374 | INFO     | architecture information:
[2025-07-23 07:27:43] 2025-07-23 11:27:12,374 | INFO     | executing command: cat /etc/os-release
[2025-07-23 07:27:43] 2025-07-23 11:27:12,384 | INFO     | cat /etc/os-release:
[2025-07-23 07:27:43] NAME="CentOS Linux"
[2025-07-23 07:27:43] VERSION="7 (Core)"
[2025-07-23 07:27:43] ID="centos"
[2025-07-23 07:27:43] ID_LIKE="rhel fedora"
[2025-07-23 07:27:43] VERSION_ID="7"
[2025-07-23 07:27:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 07:27:43] ANSI_COLOR="0;31"
[2025-07-23 07:27:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 07:27:43] HOME_URL="https://www.centos.org/"
[2025-07-23 07:27:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 07:27:43] 
[2025-07-23 07:27:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 07:27:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 07:27:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 07:27:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 07:27:43] 
[2025-07-23 07:27:43] 2025-07-23 11:27:12,384 | INFO     | ***************************************
[2025-07-23 07:27:43] 2025-07-23 11:27:12,887 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-23 07:27:43] 2025-07-23 11:27:12,903 | INFO     | sufficient remaining disk space (160518111232 B)
[2025-07-23 07:27:43] 2025-07-23 11:27:12,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 07:27:43] 2025-07-23 11:27:12,903 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 07:27:43] 2025-07-23 11:27:12,904 | INFO     | update_server=False
[2025-07-23 07:27:43] 2025-07-23 11:27:12,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 07:27:43] 2025-07-23 11:27:12,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 07:27:43] 2025-07-23 11:27:13,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 07:27:43] 2025-07-23 11:27:13,014 | INFO     | aborting loop
[2025-07-23 07:27:43] 2025-07-23 11:27:13,055 | INFO     | all data control threads have been joined
[2025-07-23 07:27:43] 2025-07-23 11:27:13,095 | INFO     | all payload control threads have been joined
[2025-07-23 07:27:43] 2025-07-23 11:27:13,459 | INFO     | all job control threads have been joined
[2025-07-23 07:27:43] 2025-07-23 11:27:13,909 | INFO     | [job] retrieve thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,019 | INFO     | [job] job monitor thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,058 | INFO     | [data] control thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,102 | INFO     | [payload] control thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,275 | INFO     | [job] validate thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,364 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,421 | INFO     | [payload] failed_post thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,461 | INFO     | [job] control thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,507 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,614 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:14,910 | INFO     | [data] copytool_out thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:15,170 | INFO     | [data] copytool_in thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:15,401 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 07:27:43] 2025-07-23 11:27:15,483 | INFO     | [payload] validate_post thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:15,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 07:27:43] 2025-07-23 11:27:16,874 | INFO     | [job] queue monitor thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:19,407 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:23,558 | INFO     | job.realtimelogging is not enabled
[2025-07-23 07:27:43] 2025-07-23 11:27:24,563 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 07:27:43] 2025-07-23 11:27:25,476 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918217475904)>', '<ExcThread(monitor, started 139917208315648)>']
[2025-07-23 07:27:43] 2025-07-23 11:27:30,480 | INFO     | all workflow threads have been joined
[2025-07-23 07:27:43] 2025-07-23 11:27:30,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 07:27:43] 2025-07-23 11:27:30,481 | INFO     | traces error code: 0
[2025-07-23 07:27:43] 2025-07-23 11:27:30,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 07:27:43] 2025-07-23 11:27:43,715 | INFO     | PID=319281 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 07:27:43] 2025-07-23 11:27:43,716 | INFO     | .. there are 16 such processes running
[2025-07-23 07:27:43] 2025-07-23 11:27:43,716 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 07:27:43] 2025-07-23 11:27:43,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 07:27:43] 2025-07-23 11:27:43,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 07:27:43] 2025-07-23 11:27:43,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 07:27:43] 2025-07-23 11:27:43,716 | INFO     | [monitor] control thread has ended
[2025-07-23 07:27:43] 2025-07-23 11:27:43,793 [wrapper] ==== pilot stdout END ====
[2025-07-23 07:27:43] 2025-07-23 11:27:43,796 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 07:27:43] 2025-07-23 11:27:43,799 [wrapper] pilotpid: 319281
[2025-07-23 07:27:43] 2025-07-23 11:27:43,802 [wrapper] Pilot exit status: 0
[2025-07-23 07:27:43] 2025-07-23 11:27:43,811 [wrapper] pandaids: 6743006054
[2025-07-23 07:27:43] 2025-07-23 11:27:43,888 [wrapper] cleanup supervisor_pilot  702691 319282
[2025-07-23 07:27:43] 2025-07-23 11:27:43,891 [wrapper] Test setup, not cleaning
[2025-07-23 07:27:43] 2025-07-23 11:27:43,893 [wrapper] apfmon messages muted
[2025-07-23 07:27:43] 2025-07-23 11:27:43,895 [wrapper] ==== wrapper stdout END ====
[2025-07-23 07:27:43] 2025-07-23 11:27:43,897 [wrapper] ==== wrapper stderr END ====
[2025-07-23 07:27:43]  *** Error codes and diagnostics ***
[2025-07-23 07:27:43]     "exeErrorCode": 0,
[2025-07-23 07:27:43]     "exeErrorDiag": "",
[2025-07-23 07:27:43]     "pilotErrorCode": 0,
[2025-07-23 07:27:43]     "pilotErrorDiag": "",
[2025-07-23 07:27:43]  *** Listing of results directory ***
[2025-07-23 07:27:43] total 634252
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 22:25 pilot3.tar.gz
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 22:35 queuedata.json
[2025-07-23 07:27:43] -rwx------. 1 boincer umatlas     36292 Jul 22 22:41 runpilot2-wrapper.sh
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas       100 Jul 23 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 07:27:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 23 06:08 run_atlas
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas       105 Jul 23 06:08 job.xml
[2025-07-23 07:27:43] -rw-r--r--. 2 boincer umatlas 343066510 Jul 23 06:08 EVNT.45697539._000152.pool.root.1
[2025-07-23 07:27:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:08 start_atlas.sh
[2025-07-23 07:27:43] drwxrwx--x. 2 boincer umatlas      4096 Jul 23 06:08 shared
[2025-07-23 07:27:43] -rw-r--r--. 2 boincer umatlas    542895 Jul 23 06:08 input.tar.gz
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas         0 Jul 23 06:08 boinc_lockfile
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas      2593 Jul 23 06:08 pandaJob.out
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas    978437 Jul 23 06:08 agis_schedconf.cvmfs.json
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas   1593041 Jul 23 06:08 agis_ddmendpoints.agis.ALL.json
[2025-07-23 07:27:43] drwx------. 4 boincer umatlas      4096 Jul 23 06:08 pilot3
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas      7173 Jul 23 07:18 init_data.xml
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas       529 Jul 23 07:26 boinc_task_state.xml
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas 301011194 Jul 23 07:26 HITS.45697541._004633.pool.root.1
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas      1031 Jul 23 07:26 memory_monitor_summary.json
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas    298024 Jul 23 07:27 log.45697541._004633.job.log.tgz.1
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas      7763 Jul 23 07:27 heartbeat.json
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 07:27 boinc_mmap_file
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas        27 Jul 23 07:27 wrapper_checkpoint.txt
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas       822 Jul 23 07:27 pilotlog.txt
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas        95 Jul 23 07:27 pilot_heartbeat.json
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas    463241 Jul 23 07:27 log.45697541._004633.job.log.1
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas       357 Jul 23 07:27 output.list
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas       620 Jul 23 07:27 runtime_log
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas    778240 Jul 23 07:27 result.tar.gz
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas       653 Jul 23 07:27 S8QKDmyaey7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsgKLDmzEG0Co.diag
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas      8660 Jul 23 07:27 runtime_log.err
[2025-07-23 07:27:43] -rw-r--r--. 1 boincer umatlas     21640 Jul 23 07:27 stderr.txt
[2025-07-23 07:27:43] HITS file was successfully produced:
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas 301011194 Jul 23 07:26 shared/HITS.pool.root.1
[2025-07-23 07:27:43]  *** Contents of shared directory: ***
[2025-07-23 07:27:43] total 630304
[2025-07-23 07:27:43] -rw-r--r--. 2 boincer umatlas 343066510 Jul 23 06:08 ATLAS.root_0
[2025-07-23 07:27:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 23 06:08 start_atlas.sh
[2025-07-23 07:27:43] -rw-r--r--. 2 boincer umatlas    542895 Jul 23 06:08 input.tar.gz
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas 301011194 Jul 23 07:26 HITS.pool.root.1
[2025-07-23 07:27:43] -rw-------. 1 boincer umatlas    778240 Jul 23 07:27 result.tar.gz
07:27:45 (315180): run_atlas exited; CPU time 34761.404131
07:27:45 (315180): called boinc_finish(0)

</stderr_txt>
]]>

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