Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-23 12:07:50 (44124): Detected: vboxwrapper 26206
2025-07-23 12:07:50 (44124): Detected: BOINC client v7.14.2
2025-07-23 12:07:50 (44124): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2025-07-23 12:07:51 (44124): Successfully copied 'init_data.xml' to the shared directory.
2025-07-23 12:07:51 (44124): Create VM. (boinc_0b96d214d85fe05e, slot#3)
2025-07-23 12:07:52 (44124): Setting Memory Size for VM. (4200MB)
2025-07-23 12:07:52 (44124): Setting CPU Count for VM. (2)
2025-07-23 12:07:52 (44124): Setting Chipset Options for VM.
2025-07-23 12:07:52 (44124): Setting Graphics Controller Options for VM.
2025-07-23 12:07:53 (44124): Setting Boot Options for VM.
2025-07-23 12:07:53 (44124): Setting Network Configuration for NAT.
2025-07-23 12:07:53 (44124): Enabling VM Network Access.
2025-07-23 12:07:53 (44124): Disabling USB Support for VM.
2025-07-23 12:07:54 (44124): Disabling COM Port Support for VM.
2025-07-23 12:07:54 (44124): Disabling LPT Port Support for VM.
2025-07-23 12:07:54 (44124): Disabling Audio Support for VM.
2025-07-23 12:07:54 (44124): Disabling Clipboard Support for VM.
2025-07-23 12:07:55 (44124): Disabling Drag and Drop Support for VM.
2025-07-23 12:07:55 (44124): Adding storage controller(s) to VM.
2025-07-23 12:07:55 (44124): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-23 12:07:56 (44124): Adding VirtualBox Guest Additions to VM.
2025-07-23 12:07:56 (44124): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-23 12:07:56 (44124): forwarding host port 54945 to guest port 80
2025-07-23 12:07:56 (44124): Enabling remote desktop for VM.
2025-07-23 12:07:57 (44124): Enabling shared directory for VM.
2025-07-23 12:07:58 (44124): Starting VM using VBoxManage interface. (boinc_0b96d214d85fe05e, slot#3)
2025-07-23 12:08:04 (44124): Successfully started VM. (PID = '39828')
2025-07-23 12:08:04 (44124): Reporting VM Process ID to BOINC.
2025-07-23 12:08:04 (44124): Guest Log: BIOS: VirtualBox 6.1.40
2025-07-23 12:08:04 (44124): Guest Log: CPUID EDX: 0x178bfbff
2025-07-23 12:08:04 (44124): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-23 12:08:04 (44124): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-23 12:08:04 (44124): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-23 12:08:04 (44124): Detected: Web Application Enabled (http://localhost:54945)
2025-07-23 12:08:04 (44124): Detected: Remote Desktop Enabled (localhost:54946)
2025-07-23 12:08:04 (44124): Preference change detected
2025-07-23 12:08:04 (44124): Setting CPU throttle for VM. (100%)
2025-07-23 12:08:04 (44124): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-23 12:08:06 (44124): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-23 12:08:06 (44124): Guest Log: BIOS: Booting from Hard Disk...
2025-07-23 12:08:09 (44124): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-23 12:08:09 (44124): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-23 12:08:09 (44124): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-23 12:08:14 (44124): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-23 12:08:14 (44124): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-23 12:08:21 (44124): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000139 main     Log opened 2025-07-23T12:08:19.263914000Z
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000232 main     OS Product: Linux
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000266 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000290 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000314 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000315 main     Process ID: 1259
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.000316 main     Package type: LINUX_64BITS_GENERIC
2025-07-23 12:08:21 (44124): Guest Log: 00:00:00.001001 main     5.2.32 r132073 started. Verbose level = 0
2025-07-23 12:08:22 (44124): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-23 12:08:22 (44124): Guest Log: [INFO] Mounting shared directory
2025-07-23 12:08:22 (44124): Guest Log: [INFO] Checking for init_data.xml
2025-07-23 12:08:30 (44124): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-23 12:08:30 (44124): Guest Log: [INFO] Detected branch: prod
2025-07-23 12:08:30 (44124): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-23 12:08:30 (44124): Guest Log: Copying input files
2025-07-23 12:08:31 (44124): Guest Log: 00:00:10.002326 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 688 249 000ns (GuestNow=1 753 286 910 954 160 000 ns GuestLast=1 753 272 499 265 911 000 ns fSetTimeLastLoop=true )
2025-07-23 12:08:32 (44124): Guest Log: Copied input files into RunAtlas.
2025-07-23 12:08:33 (44124): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-23 12:08:33 (44124): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-23 12:08:33 (44124): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-23 12:08:33 (44124): Guest Log: Further information can be found at the LHC@home message board.
2025-07-23 12:08:41 (44124): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-23 12:08:41 (44124): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-23 12:08:41 (44124): Guest Log: 2.6.3.0 1539 0 32172 148664 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-23 12:08:43 (44124): Guest Log: copied the webapp to /var/www
2025-07-23 12:08:43 (44124): Guest Log: ATHENA_PROC_NUMBER=2
2025-07-23 12:08:43 (44124): Guest Log: ATHENA_CORE_NUMBER=2
2025-07-23 12:08:43 (44124): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-23 12:08:43 (44124): Guest Log:  *** Starting ATLAS job. (PandaID=6741872236 taskID=45697490) ***
2025-07-23 13:48:16 (44124): Status Report: Elapsed Time: '6000.000000'
2025-07-23 13:48:16 (44124): Status Report: CPU Time: '11428.656250'
2025-07-23 15:28:29 (44124): Status Report: Elapsed Time: '12000.000000'
2025-07-23 15:28:29 (44124): Status Report: CPU Time: '23367.953125'
2025-07-23 17:08:42 (44124): Status Report: Elapsed Time: '18000.000000'
2025-07-23 17:08:42 (44124): Status Report: CPU Time: '35310.906250'
2025-07-23 18:48:54 (44124): Status Report: Elapsed Time: '24000.000000'
2025-07-23 18:48:54 (44124): Status Report: CPU Time: '47251.468750'
2025-07-23 20:29:07 (44124): Status Report: Elapsed Time: '30000.000000'
2025-07-23 20:29:07 (44124): Status Report: CPU Time: '59192.312500'
2025-07-23 22:09:19 (44124): Status Report: Elapsed Time: '36000.000000'
2025-07-23 22:09:19 (44124): Status Report: CPU Time: '71133.281250'
2025-07-23 23:49:33 (44124): Status Report: Elapsed Time: '42000.000000'
2025-07-23 23:49:33 (44124): Status Report: CPU Time: '83070.328125'
2025-07-24 00:10:06 (44124): Guest Log:  *** Job finished ***
2025-07-24 00:10:06 (44124): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:09:44,545 | INFO     | end of generic workflow (traces error code: 0)
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:09:44,545 | INFO     | traces error code: 0
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:09:44,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:09:54,006 [wrapper] supervise_pilot (15 min periods counter: 49)
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,520 | INFO     | PID=5839 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,521 | INFO     | found 0 job(s) in 20 queues
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,521 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,521 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,521 | INFO     | [monitor] control thread has ended
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,623 [wrapper] ==== pilot stdout END ====
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,630 [wrapper] ==== wrapper stdout RESUME ====
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,636 [wrapper] pilotpid: 5839
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,640 [wrapper] Pilot exit status: 0
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,683 [wrapper] pandaids: 6741872236
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,710 [wrapper] cleanup supervisor_pilot 32631 5840
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,719 [wrapper] Test setup, not cleaning
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,724 [wrapper] apfmon messages muted
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,728 [wrapper] ==== wrapper stdout END ====
2025-07-24 00:10:06 (44124): Guest Log: 2025-07-24 04:10:04,732 [wrapper] ==== wrapper stderr END ====
2025-07-24 00:10:06 (44124): Guest Log:  *** Error codes and diagnostics ***
2025-07-24 00:10:06 (44124): Guest Log:     "exeErrorCode": 0,
2025-07-24 00:10:06 (44124): Guest Log:     "exeErrorDiag": "",
2025-07-24 00:10:06 (44124): Guest Log:     "pilotErrorCode": 0,
2025-07-24 00:10:06 (44124): Guest Log:     "pilotErrorDiag": "",
2025-07-24 00:10:06 (44124): Guest Log:  *** Listing of results directory ***
2025-07-24 00:10:06 (44124): Guest Log: total 309220
2025-07-24 00:10:06 (44124): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 23 02:21 queuedata.json
2025-07-24 00:10:06 (44124): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 23 02:25 pilot3.tar.gz
2025-07-24 00:10:06 (44124): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 23 02:26 runpilot2-wrapper.sh
2025-07-24 00:10:06 (44124): Guest Log: -rwxr-xr-x. 1 atlas atlas      9011 Jul 23 16:08 init_data.xml
2025-07-24 00:10:06 (44124): Guest Log: -rwxr-xr-x. 1 atlas atlas    542905 Jul 23 16:08 input.tar.gz
2025-07-24 00:10:06 (44124): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 23 16:08 start_atlas.sh
2025-07-24 00:10:06 (44124): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 23 16:08 EVNT.45697488._000202.pool.root.1 -> /data/./ATLAS.root_0
2025-07-24 00:10:06 (44124): Guest Log: -rw-r--r--. 1 atlas atlas      2590 Jul 23 16:08 pandaJob.out
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas    978487 Jul 23 16:09 agis_schedconf.cvmfs.json
2025-07-24 00:10:06 (44124): Guest Log: drwx------. 4 atlas atlas      4096 Jul 23 16:09 pilot3
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas 304233756 Jul 24 04:08 HITS.45697490._004141.pool.root.1
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas      1039 Jul 24 04:09 memory_monitor_summary.json
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas   1593041 Jul 24 04:09 agis_ddmendpoints.agis.ALL.json
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas    554094 Jul 24 04:09 log.45697490._004141.job.log.tgz.1
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas      7811 Jul 24 04:09 heartbeat.json
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas        95 Jul 24 04:10 pilot_heartbeat.json
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas       744 Jul 24 04:10 pilotlog.txt
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas   3746023 Jul 24 04:10 log.45697490._004141.job.log.1
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas       357 Jul 24 04:10 output.list
2025-07-24 00:10:06 (44124): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 24 04:10 runtime_log
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas   4321280 Jul 24 04:10 result.tar.gz
2025-07-24 00:10:06 (44124): Guest Log: -rw-r--r--. 1 atlas atlas      8579 Jul 24 04:10 runtime_log.err
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas       653 Jul 24 04:10 0c2MDmMMey7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNfKLDm6ZxfWm.diag
2025-07-24 00:10:06 (44124): Guest Log: Looking for outputfile HITS.45697490._004141.pool.root.1
2025-07-24 00:10:06 (44124): Guest Log: HITS file was successfully produced
2025-07-24 00:10:06 (44124): Guest Log: -rw-------. 1 atlas atlas 304233756 Jul 24 04:08 /home/atlas/RunAtlas/HITS.45697490._004141.pool.root.1
2025-07-24 00:10:09 (44124): Guest Log: Successfully finished the ATLAS job!
2025-07-24 00:10:09 (44124): Guest Log: Copying the results back to the shared directory!
2025-07-24 00:10:09 (44124): Guest Log:  *** Contents of shared directory: ***
2025-07-24 00:10:09 (44124): Guest Log: total 638392
2025-07-24 00:10:09 (44124): Guest Log: -rwxrwxrwx. 1 root root 344582756 Jul 23 16:07 ATLAS.root_0
2025-07-24 00:10:09 (44124): Guest Log: -rwxrwxrwx. 1 root root 304233756 Jul 24 04:10 HITS.pool.root.1
2025-07-24 00:10:09 (44124): Guest Log: -rwxrwxrwx. 1 root root      9011 Jul 23 16:07 init_data.xml
2025-07-24 00:10:09 (44124): Guest Log: -rwxrwxrwx. 1 root root    542905 Jul 23 09:32 input.tar.gz
2025-07-24 00:10:09 (44124): Guest Log: -rwxrwxrwx. 1 root root   4321280 Jul 24 04:10 result.tar.gz
2025-07-24 00:10:09 (44124): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 09:32 start_atlas.sh
2025-07-24 00:10:09 (44124): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-24 00:10:09 (44124): VM Completion File Detected.
2025-07-24 00:10:09 (44124): Powering off VM.
2025-07-24 00:10:10 (44124): Successfully stopped VM.
2025-07-24 00:10:10 (44124): Deregistering VM. (boinc_0b96d214d85fe05e, slot#3)
2025-07-24 00:10:10 (44124): Removing network bandwidth throttle group from VM.
2025-07-24 00:10:10 (44124): Removing VM from VirtualBox.
00:10:16 (44124): called boinc_finish(0)

</stderr_txt>
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