Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 15:24:35 (18816): Detected: vboxwrapper 26206
2025-07-27 15:24:35 (18816): Detected: BOINC client v7.22.2
2025-07-27 15:24:36 (18816): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-27 15:24:36 (18816): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 15:24:37 (18816): Create VM. (boinc_f05797c6db8d61e4, slot#6)
2025-07-27 15:24:38 (18816): Setting Memory Size for VM. (4700MB)
2025-07-27 15:24:38 (18816): Setting CPU Count for VM. (7)
2025-07-27 15:24:38 (18816): Setting Chipset Options for VM.
2025-07-27 15:24:39 (18816): Setting Graphics Controller Options for VM.
2025-07-27 15:24:39 (18816): Setting Boot Options for VM.
2025-07-27 15:24:39 (18816): Setting Network Configuration for NAT.
2025-07-27 15:24:40 (18816): Enabling VM Network Access.
2025-07-27 15:24:40 (18816): Disabling USB Support for VM.
2025-07-27 15:24:40 (18816): Disabling COM Port Support for VM.
2025-07-27 15:24:41 (18816): Disabling LPT Port Support for VM.
2025-07-27 15:24:41 (18816): Disabling Audio Support for VM.
2025-07-27 15:24:41 (18816): Disabling Clipboard Support for VM.
2025-07-27 15:24:42 (18816): Disabling Drag and Drop Support for VM.
2025-07-27 15:24:42 (18816): Adding storage controller(s) to VM.
2025-07-27 15:24:42 (18816): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 15:24:46 (18816): Adding VirtualBox Guest Additions to VM.
2025-07-27 15:24:47 (18816): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 15:24:47 (18816): forwarding host port 58382 to guest port 80
2025-07-27 15:24:47 (18816): Enabling remote desktop for VM.
2025-07-27 15:24:48 (18816): Required extension pack not installed, remote desktop not enabled.
2025-07-27 15:24:48 (18816): Enabling shared directory for VM.
2025-07-27 15:24:48 (18816): Starting VM using VBoxManage interface. (boinc_f05797c6db8d61e4, slot#6)
2025-07-27 15:25:00 (18816): Successfully started VM. (PID = '11364')
2025-07-27 15:25:00 (18816): Reporting VM Process ID to BOINC.
2025-07-27 15:25:00 (18816): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-27 15:25:00 (18816): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 15:25:00 (18816): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 15:25:00 (18816): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 15:25:00 (18816): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 15:25:00 (18816): Detected: Web Application Enabled (http://localhost:58382)
2025-07-27 15:25:00 (18816): Preference change detected
2025-07-27 15:25:00 (18816): Setting CPU throttle for VM. (75%)
2025-07-27 15:25:00 (18816): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 15:25:02 (18816): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 15:25:02 (18816): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 15:25:07 (18816): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 15:25:07 (18816): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 15:25:07 (18816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 15:25:24 (18816): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 15:25:24 (18816): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 15:25:58 (18816): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.000999 main     Log opened 2025-07-27T15:25:56.636225000Z
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.001632 main     OS Product: Linux
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.001779 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.001931 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.002107 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.002111 main     Process ID: 1316
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.002113 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 15:25:58 (18816): Guest Log: 00:00:00.005996 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 15:25:58 (18816): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 15:25:58 (18816): Guest Log: [INFO] Mounting shared directory
2025-07-27 15:25:58 (18816): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 15:26:05 (18816): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 15:26:05 (18816): Guest Log: [INFO] Detected branch: prod
2025-07-27 15:26:05 (18816): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 15:26:05 (18816): Guest Log: Copying input files
2025-07-27 15:26:08 (18816): Guest Log: 00:00:10.088778 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 404 503 846 000ns (GuestNow=1 753 644 361 153 837 000 ns GuestLast=1 753 629 956 649 991 000 ns fSetTimeLastLoop=true )
2025-07-27 15:26:13 (18816): Guest Log: Copied input files into RunAtlas.
2025-07-27 15:26:13 (18816): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 15:26:13 (18816): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 15:26:13 (18816): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 15:26:13 (18816): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 15:26:29 (18816): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 15:26:35 (18816): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 15:26:35 (18816): Guest Log: 2.6.3.0 1616 0 31980 148822 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 15:26:40 (18816): Guest Log: copied the webapp to /var/www
2025-07-27 15:26:40 (18816): Guest Log: ATHENA_PROC_NUMBER=7
2025-07-27 15:26:40 (18816): Guest Log: ATHENA_CORE_NUMBER=7
2025-07-27 15:26:40 (18816): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 15:26:40 (18816): Guest Log:  *** Starting ATLAS job. (PandaID=6741872059 taskID=45697490) ***
2025-07-27 15:40:21 (18816): Guest Log:  *** Job finished ***
2025-07-27 15:40:21 (18816): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:39:51,306 | INFO     | all workflow threads have been joined
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:39:51,307 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:39:51,308 | INFO     | traces error code: 0
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:39:51,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:12,848 | INFO     | PID=5975 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:12,850 | INFO     | found 0 job(s) in 20 queues
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:12,850 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:12,851 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:12,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:12,851 | INFO     | [monitor] control thread has ended
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,264 [wrapper] ==== pilot stdout END ====
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,295 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,325 [wrapper] pilotpid: 5975
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,355 [wrapper] Pilot exit status: 0
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,712 [wrapper] pandaids: 6741872059
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,938 [wrapper] cleanup supervisor_pilot  5981 5976
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:13,973 [wrapper] Test setup, not cleaning
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:14,008 [wrapper] apfmon messages muted
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:14,043 [wrapper] ==== wrapper stdout END ====
2025-07-27 15:40:21 (18816): Guest Log: 2025-07-27 19:40:14,078 [wrapper] ==== wrapper stderr END ====
2025-07-27 15:40:21 (18816): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 15:40:21 (18816): Guest Log:     "exeErrorCode": 65,
2025-07-27 15:40:21 (18816): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-27 15:40:21 (18816): Guest Log:     "pilotErrorCode": 1305,
2025-07-27 15:40:21 (18816): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-27 15:40:21 (18816): Guest Log:  *** Listing of results directory ***
2025-07-27 15:40:21 (18816): Guest Log: total 4188
2025-07-27 15:40:21 (18816): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 23 01:25 pilot3.tar.gz
2025-07-27 15:40:21 (18816): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 23 01:31 queuedata.json
2025-07-27 15:40:21 (18816): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 23 01:32 runpilot2-wrapper.sh
2025-07-27 15:40:21 (18816): Guest Log: -rwxr-xr-x. 1 atlas atlas    6104 Jul 27 19:26 init_data.xml
2025-07-27 15:40:21 (18816): Guest Log: -rwxr-xr-x. 1 atlas atlas  542908 Jul 27 19:26 input.tar.gz
2025-07-27 15:40:21 (18816): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 27 19:26 start_atlas.sh
2025-07-27 15:40:21 (18816): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 27 19:26 EVNT.45697488._000195.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 15:40:21 (18816): Guest Log: -rw-r--r--. 1 atlas atlas    2589 Jul 27 19:26 pandaJob.out
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas  980125 Jul 27 19:28 agis_schedconf.cvmfs.json
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 27 19:28 agis_ddmendpoints.agis.ALL.json
2025-07-27 15:40:21 (18816): Guest Log: drwx------. 4 atlas atlas    4096 Jul 27 19:28 pilot3
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas   52177 Jul 27 19:37 log.45697490._003968.job.log.tgz.1
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas      95 Jul 27 19:39 pilot_heartbeat.json
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas    8176 Jul 27 19:39 heartbeat.json
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas     744 Jul 27 19:40 pilotlog.txt
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas  193197 Jul 27 19:40 log.45697490._003968.job.log.1
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas     188 Jul 27 19:40 output.list
2025-07-27 15:40:21 (18816): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 27 19:40 runtime_log
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas  266240 Jul 27 19:40 result.tar.gz
2025-07-27 15:40:21 (18816): Guest Log: -rw-------. 1 atlas atlas     647 Jul 27 19:40 UENKDmPWdy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKdKLDmJVc4Im.diag
2025-07-27 15:40:21 (18816): Guest Log: -rw-r--r--. 1 atlas atlas    8449 Jul 27 19:40 runtime_log.err
2025-07-27 15:40:21 (18816): Guest Log: Looking for outputfile HITS.45697490._003968.pool.root.1
2025-07-27 15:40:21 (18816): Guest Log: No HITS file was produced
2025-07-27 15:40:21 (18816): Guest Log: Successfully finished the ATLAS job!
2025-07-27 15:40:21 (18816): Guest Log: Copying the results back to the shared directory!
2025-07-27 15:40:22 (18816): Guest Log:  *** Contents of shared directory: ***
2025-07-27 15:40:22 (18816): Guest Log: total 338524
2025-07-27 15:40:22 (18816): Guest Log: -rwxrwxrwx. 1 root root 345810657 Jul 27 19:24 ATLAS.root_0
2025-07-27 15:40:22 (18816): Guest Log: -rwxrwxrwx. 1 root root      6104 Jul 27 19:24 init_data.xml
2025-07-27 15:40:22 (18816): Guest Log: -rwxrwxrwx. 1 root root    542908 Jul 23 09:43 input.tar.gz
2025-07-27 15:40:22 (18816): Guest Log: -rwxrwxrwx. 1 root root    266240 Jul 27  2025 result.tar.gz
2025-07-27 15:40:22 (18816): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 09:43 start_atlas.sh
2025-07-27 15:40:22 (18816): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 15:40:22 (18816): VM Completion File Detected.
2025-07-27 15:40:22 (18816): Powering off VM.
2025-07-27 15:40:24 (18816): Successfully stopped VM.
2025-07-27 15:40:24 (18816): Deregistering VM. (boinc_f05797c6db8d61e4, slot#6)
2025-07-27 15:40:24 (18816): Removing network bandwidth throttle group from VM.
2025-07-27 15:40:24 (18816): Removing VM from VirtualBox.
15:40:29 (18816): called boinc_finish(0)

</stderr_txt>
]]>

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