Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-23 18:20:04 (13202): Detected: vboxwrapper 26206
2025-07-23 18:20:04 (13202): Detected: BOINC client v8.2.4
2025-07-23 18:20:05 (13202): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-07-23 18:20:05 (13202): Successfully copied 'init_data.xml' to the shared directory.
2025-07-23 18:20:05 (13202): Create VM. (boinc_8aef809da5bd6100, slot#5)
2025-07-23 18:20:05 (13202): Setting Memory Size for VM. (4800MB)
2025-07-23 18:20:05 (13202): Setting CPU Count for VM. (8)
2025-07-23 18:20:05 (13202): Setting Chipset Options for VM.
2025-07-23 18:20:05 (13202): Setting Graphics Controller Options for VM.
2025-07-23 18:20:05 (13202): Setting Boot Options for VM.
2025-07-23 18:20:05 (13202): Setting Network Configuration for NAT.
2025-07-23 18:20:05 (13202): Enabling VM Network Access.
2025-07-23 18:20:05 (13202): Disabling USB Support for VM.
2025-07-23 18:20:05 (13202): Disabling COM Port Support for VM.
2025-07-23 18:20:05 (13202): Disabling LPT Port Support for VM.
2025-07-23 18:20:05 (13202): Disabling Audio Support for VM.
2025-07-23 18:20:05 (13202): Disabling Clipboard Support for VM.
2025-07-23 18:20:05 (13202): Disabling Drag and Drop Support for VM.
2025-07-23 18:20:05 (13202): Adding storage controller(s) to VM.
2025-07-23 18:20:05 (13202): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-23 18:20:07 (13202): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-23 18:20:07 (13202): forwarding host port 44571 to guest port 80
2025-07-23 18:20:07 (13202): Enabling remote desktop for VM.
2025-07-23 18:20:07 (13202): Required extension pack not installed, remote desktop not enabled.
2025-07-23 18:20:07 (13202): Enabling shared directory for VM.
2025-07-23 18:20:07 (13202): Starting VM using VBoxManage interface. (boinc_8aef809da5bd6100, slot#5)
2025-07-23 18:20:08 (13202): Successfully started VM. (PID = '13699')
2025-07-23 18:20:08 (13202): Reporting VM Process ID to BOINC.
2025-07-23 18:20:08 (13202): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-23 18:20:08 (13202): Guest Log: CPUID EDX: 0x178bfbff
2025-07-23 18:20:08 (13202): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-23 18:20:08 (13202): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-23 18:20:08 (13202): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-23 18:20:08 (13202): Detected: Web Application Enabled (http://localhost:44571)
2025-07-23 18:20:09 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 18:20:28 (13202): Preference change detected
2025-07-23 18:20:28 (13202): Setting CPU throttle for VM. (90%)
2025-07-23 18:20:28 (13202): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-23 18:20:29 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 18:20:30 (13202): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-23 18:20:30 (13202): Guest Log: BIOS: Booting from Hard Disk...
2025-07-23 18:20:33 (13202): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-23 18:20:33 (13202): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-23 18:20:33 (13202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-23 18:20:41 (13202): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-23 18:20:41 (13202): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-23 18:20:48 (13202): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.000437 main     Log opened 2025-07-23T10:20:26.044105000Z
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.000893 main     OS Product: Linux
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.001017 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.001099 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.001176 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.001180 main     Process ID: 1341
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.001182 main     Package type: LINUX_64BITS_GENERIC
2025-07-23 18:20:48 (13202): Guest Log: 00:00:00.004777 main     5.2.32 r132073 started. Verbose level = 0
2025-07-23 18:20:48 (13202): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-23 18:20:48 (13202): Guest Log: [INFO] Mounting shared directory
2025-07-23 18:20:48 (13202): Guest Log: [INFO] Checking for init_data.xml
2025-07-23 18:21:06 (13202): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-23 18:21:06 (13202): Guest Log: [INFO] Detected branch: prod
2025-07-23 18:21:06 (13202): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-23 18:21:06 (13202): Guest Log: Copying input files
2025-07-23 18:21:08 (13202): Guest Log: Copied input files into RunAtlas.
2025-07-23 18:21:08 (13202): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-23 18:21:08 (13202): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-23 18:21:08 (13202): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-23 18:21:08 (13202): Guest Log: Further information can be found at the LHC@home message board.
2025-07-23 18:21:18 (13202): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-23 18:21:19 (13202): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-23 18:21:19 (13202): Guest Log: 2.6.3.0 1622 0 32184 148655 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-23 18:21:19 (13202): Guest Log: copied the webapp to /var/www
2025-07-23 18:21:20 (13202): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-23 18:21:20 (13202): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-23 18:21:20 (13202): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-23 18:21:20 (13202): Guest Log:  *** Starting ATLAS job. (PandaID=6742556922 taskID=45697541) ***
2025-07-23 18:22:39 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 18:23:00 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 18:34:29 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 18:34:50 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 18:35:10 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 18:35:31 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 18:43:10 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 18:43:31 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 18:48:01 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 18:48:21 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 19:04:23 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 19:04:42 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 19:40:46 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 19:41:05 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 19:53:06 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 19:53:26 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 20:02:20 (13202): Status Report: Elapsed Time: '6000.000000'
2025-07-23 20:02:20 (13202): Status Report: CPU Time: '35021.250000'
2025-07-23 20:44:50 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 20:45:10 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 21:02:01 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 21:02:21 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 21:40:53 (13202): VM state change detected. (old = 'running', new = 'paused')
2025-07-23 21:41:13 (13202): VM state change detected. (old = 'paused', new = 'running')
2025-07-23 21:42:22 (13202): Status Report: Elapsed Time: '12000.000000'
2025-07-23 21:42:22 (13202): Status Report: CPU Time: '76142.040000'
2025-07-23 21:50:55 (13202): Guest Log:  *** Job finished ***
2025-07-23 21:50:55 (13202): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:49,997 | INFO     | [job] control thread has finished
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:50,521 | INFO     | [data] copytool_out thread has finished
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:51,242 | INFO     | [data] queue_monitor thread has finished
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:52,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407319693120)>', '<ExcThread(monitor, started 140406876518144)>']
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:52,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:52,244 | INFO     | [monitor] control thread has ended
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,095 | INFO     | all workflow threads have been joined
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,096 | INFO     | end of generic workflow (traces error code: 0)
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,097 | INFO     | traces error code: 0
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,098 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,160 [wrapper] ==== pilot stdout END ====
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,163 [wrapper] ==== wrapper stdout RESUME ====
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,167 [wrapper] pilotpid: 5990
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,170 [wrapper] Pilot exit status: 0
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,450 [wrapper] pandaids: 6742556922
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,557 [wrapper] cleanup supervisor_pilot 11372 5991
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,562 [wrapper] Test setup, not cleaning
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,567 [wrapper] apfmon messages muted
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,571 [wrapper] ==== wrapper stdout END ====
2025-07-23 21:50:55 (13202): Guest Log: 2025-07-23 13:46:57,574 [wrapper] ==== wrapper stderr END ====
2025-07-23 21:50:55 (13202): Guest Log:  *** Error codes and diagnostics ***
2025-07-23 21:50:55 (13202): Guest Log:     "exeErrorCode": 0,
2025-07-23 21:50:55 (13202): Guest Log:     "exeErrorDiag": "",
2025-07-23 21:50:55 (13202): Guest Log:     "pilotErrorCode": 0,
2025-07-23 21:50:55 (13202): Guest Log:     "pilotErrorDiag": "",
2025-07-23 21:50:55 (13202): Guest Log:  *** Listing of results directory ***
2025-07-23 21:50:55 (13202): Guest Log: total 304876
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 22 21:10 queuedata.json
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 22 21:11 pilot3.tar.gz
2025-07-23 21:50:55 (13202): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 22 21:15 runpilot2-wrapper.sh
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas      6263 Jul 23 10:20 init_data.xml
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas    542900 Jul 23 10:20 input.tar.gz
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 23 10:20 start_atlas.sh
2025-07-23 21:50:55 (13202): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 23 10:20 EVNT.45697539._000145.pool.root.1 -> /data/./ATLAS.root_0
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas      2594 Jul 23 10:20 pandaJob.out
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas    978437 Jul 23 10:23 agis_schedconf.cvmfs.json
2025-07-23 21:50:55 (13202): Guest Log: drwx------. 4 atlas atlas      4096 Jul 23 10:23 pilot3
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas 305692467 Jul 23 13:45 HITS.45697541._004449.pool.root.1
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas      1032 Jul 23 13:46 memory_monitor_summary.json
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas   1593041 Jul 23 13:46 agis_ddmendpoints.agis.ALL.json
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas    361617 Jul 23 13:46 log.45697541._004449.job.log.tgz.1
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas        95 Jul 23 13:46 pilot_heartbeat.json
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas      7790 Jul 23 13:46 heartbeat.json
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas      4726 Jul 23 13:46 pilotlog.txt
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas    986833 Jul 23 13:46 log.45697541._004449.job.log.1
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas       357 Jul 23 13:46 output.list
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 23 13:46 runtime_log
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas   1372160 Jul 23 13:46 result.tar.gz
2025-07-23 21:50:55 (13202): Guest Log: -rw-r--r--. 1 atlas atlas      8611 Jul 23 13:46 runtime_log.err
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas       666 Jul 23 13:46 FqPMDm0VZy7n9Rq4apOajLDm4fhM0noT9bVof3QYDm1TvKDmfTlmUm.diag
2025-07-23 21:50:55 (13202): Guest Log: Looking for outputfile HITS.45697541._004449.pool.root.1
2025-07-23 21:50:55 (13202): Guest Log: HITS file was successfully produced
2025-07-23 21:50:55 (13202): Guest Log: -rw-------. 1 atlas atlas 305692467 Jul 23 13:45 /home/atlas/RunAtlas/HITS.45697541._004449.pool.root.1
2025-07-23 21:50:55 (13202): Guest Log: Successfully finished the ATLAS job!
2025-07-23 21:50:55 (13202): Guest Log: Copying the results back to the shared directory!
2025-07-23 21:50:55 (13202): Guest Log:  *** Contents of shared directory: ***
2025-07-23 21:50:56 (13202): Guest Log: total 342716
2025-07-23 21:50:56 (13202): Guest Log: -rw-r--r--. 1 root root 348993665 Jul 23 10:20 ATLAS.root_0
2025-07-23 21:50:56 (13202): Guest Log: -rw-r--r--. 1 root root      6263 Jul 23 10:20 init_data.xml
2025-07-23 21:50:56 (13202): Guest Log: -rw-r--r--. 1 root root    542900 Jul 23 10:20 input.tar.gz
2025-07-23 21:50:56 (13202): Guest Log: -rw-r--r--. 1 root root   1372160 Jul 23  2025 result.tar.gz
2025-07-23 21:50:56 (13202): Guest Log: -rw-r--r--. 1 root root     15095 Jul 23 10:20 start_atlas.sh
2025-07-23 21:50:56 (13202): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-23 21:50:56 (13202): VM Completion File Detected.
2025-07-23 21:50:56 (13202): Powering off VM.
2025-07-23 21:50:57 (13202): Successfully stopped VM.
2025-07-23 21:50:57 (13202): Deregistering VM. (boinc_8aef809da5bd6100, slot#5)
2025-07-23 21:50:57 (13202): Removing network bandwidth throttle group from VM.
2025-07-23 21:50:57 (13202): Removing VM from VirtualBox.
21:51:02 (13202): called boinc_finish(0)

</stderr_txt>
]]>

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