Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-23 17:44:09 (5492): Detected: vboxwrapper 26206
2025-07-23 17:44:09 (5492): Detected: BOINC client v8.0.2
2025-07-23 17:44:10 (5492): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-23 17:44:10 (5492): Successfully copied 'init_data.xml' to the shared directory.
2025-07-23 17:44:11 (5492): Create VM. (boinc_ee6aaca607ea8420, slot#0)
2025-07-23 17:44:11 (5492): Setting Memory Size for VM. (4600MB)
2025-07-23 17:44:12 (5492): Setting CPU Count for VM. (6)
2025-07-23 17:44:12 (5492): Setting Chipset Options for VM.
2025-07-23 17:44:12 (5492): Setting Graphics Controller Options for VM.
2025-07-23 17:44:12 (5492): Setting Boot Options for VM.
2025-07-23 17:44:13 (5492): Setting Network Configuration for NAT.
2025-07-23 17:44:13 (5492): Enabling VM Network Access.
2025-07-23 17:44:13 (5492): Disabling USB Support for VM.
2025-07-23 17:44:13 (5492): Disabling COM Port Support for VM.
2025-07-23 17:44:14 (5492): Disabling LPT Port Support for VM.
2025-07-23 17:44:14 (5492): Disabling Audio Support for VM.
2025-07-23 17:44:14 (5492): Disabling Clipboard Support for VM.
2025-07-23 17:44:15 (5492): Disabling Drag and Drop Support for VM.
2025-07-23 17:44:15 (5492): Adding storage controller(s) to VM.
2025-07-23 17:44:15 (5492): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-23 17:44:18 (5492): Adding VirtualBox Guest Additions to VM.
2025-07-23 17:44:18 (5492): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-23 17:44:18 (5492): forwarding host port 50291 to guest port 80
2025-07-23 17:44:19 (5492): Enabling remote desktop for VM.
2025-07-23 17:44:19 (5492): Required extension pack not installed, remote desktop not enabled.
2025-07-23 17:44:19 (5492): Enabling shared directory for VM.
2025-07-23 17:44:19 (5492): Starting VM using VBoxManage interface. (boinc_ee6aaca607ea8420, slot#0)
2025-07-23 17:44:26 (5492): Successfully started VM. (PID = '24288')
2025-07-23 17:44:26 (5492): Reporting VM Process ID to BOINC.
2025-07-23 17:44:26 (5492): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-23 17:44:26 (5492): Guest Log: CPUID EDX: 0x178bfbff
2025-07-23 17:44:26 (5492): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-23 17:44:26 (5492): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-23 17:44:26 (5492): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-23 17:44:26 (5492): Detected: Web Application Enabled (http://localhost:50291)
2025-07-23 17:44:26 (5492): Preference change detected
2025-07-23 17:44:26 (5492): Setting CPU throttle for VM. (100%)
2025-07-23 17:44:26 (5492): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-23 17:44:28 (5492): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-23 17:44:28 (5492): Guest Log: BIOS: Booting from Hard Disk...
2025-07-23 17:44:31 (5492): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-23 17:44:31 (5492): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-23 17:44:31 (5492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-23 17:44:36 (5492): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-23 17:44:36 (5492): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-23 17:44:41 (5492): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000172 main     Log opened 2025-07-23T17:44:39.108676000Z
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000261 main     OS Product: Linux
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000299 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000320 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000340 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000340 main     Process ID: 1336
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.000341 main     Package type: LINUX_64BITS_GENERIC
2025-07-23 17:44:41 (5492): Guest Log: 00:00:00.001762 main     5.2.32 r132073 started. Verbose level = 0
2025-07-23 17:44:41 (5492): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-23 17:44:41 (5492): Guest Log: [INFO] Mounting shared directory
2025-07-23 17:44:41 (5492): Guest Log: [INFO] Checking for init_data.xml
2025-07-23 17:44:44 (5492): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-23 17:44:44 (5492): Guest Log: [INFO] Detected branch: prod
2025-07-23 17:44:44 (5492): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-23 17:44:44 (5492): Guest Log: Copying input files
2025-07-23 17:44:46 (5492): Guest Log: Copied input files into RunAtlas.
2025-07-23 17:44:46 (5492): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-23 17:44:46 (5492): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-23 17:44:46 (5492): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-23 17:44:46 (5492): Guest Log: Further information can be found at the LHC@home message board.
2025-07-23 17:44:51 (5492): Guest Log: 00:00:10.010884 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 171 909 000ns (GuestNow=1 753 285 490 939 715 000 ns GuestLast=1 753 292 679 111 624 000 ns fSetTimeLastLoop=true )
2025-07-23 17:44:59 (5492): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-23 17:44:59 (5492): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-23 17:44:59 (5492): Guest Log: 2.6.3.0 1613 0 30012 148664 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-23 17:45:00 (5492): Guest Log: copied the webapp to /var/www
2025-07-23 17:45:00 (5492): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-23 17:45:00 (5492): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-23 17:45:00 (5492): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-23 17:45:00 (5492): Guest Log:  *** Starting ATLAS job. (PandaID=6741870794 taskID=45697490) ***
2025-07-23 19:24:52 (5492): Status Report: Elapsed Time: '6000.000000'
2025-07-23 19:24:52 (5492): Status Report: CPU Time: '31501.546875'
2025-07-23 21:04:58 (5492): Status Report: Elapsed Time: '12000.000000'
2025-07-23 21:04:58 (5492): Status Report: CPU Time: '66445.921875'
2025-07-23 21:50:00 (5492): Guest Log:  *** Job finished ***
2025-07-23 21:50:00 (5492): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:38,210 | INFO     | all workflow threads have been joined
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:38,211 | INFO     | end of generic workflow (traces error code: 0)
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:38,211 | INFO     | traces error code: 0
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:38,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,391 | INFO     | PID=5949 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,391 | INFO     | found 0 job(s) in 20 queues
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,391 | INFO     | [monitor] control thread has ended
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,491 [wrapper] ==== pilot stdout END ====
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,496 [wrapper] ==== wrapper stdout RESUME ====
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,500 [wrapper] pilotpid: 5949
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,504 [wrapper] Pilot exit status: 0
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,654 [wrapper] pandaids: 6741870794
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,681 [wrapper] cleanup supervisor_pilot 15396 5950
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,688 [wrapper] Test setup, not cleaning
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,693 [wrapper] apfmon messages muted
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,697 [wrapper] ==== wrapper stdout END ====
2025-07-23 21:50:00 (5492): Guest Log: 2025-07-23 19:49:57,701 [wrapper] ==== wrapper stderr END ====
2025-07-23 21:50:00 (5492): Guest Log:  *** Error codes and diagnostics ***
2025-07-23 21:50:00 (5492): Guest Log:     "exeErrorCode": 0,
2025-07-23 21:50:00 (5492): Guest Log:     "exeErrorDiag": "",
2025-07-23 21:50:00 (5492): Guest Log:     "pilotErrorCode": 0,
2025-07-23 21:50:00 (5492): Guest Log:     "pilotErrorDiag": "",
2025-07-23 21:50:00 (5492): Guest Log:  *** Listing of results directory ***
2025-07-23 21:50:00 (5492): Guest Log: total 303284
2025-07-23 21:50:00 (5492): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 23 00:24 pilot3.tar.gz
2025-07-23 21:50:00 (5492): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 23 01:01 queuedata.json
2025-07-23 21:50:00 (5492): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 23 01:03 runpilot2-wrapper.sh
2025-07-23 21:50:00 (5492): Guest Log: -rwxr-xr-x. 1 atlas atlas      9157 Jul 23 15:44 init_data.xml
2025-07-23 21:50:00 (5492): Guest Log: -rwxr-xr-x. 1 atlas atlas    542908 Jul 23 15:44 input.tar.gz
2025-07-23 21:50:00 (5492): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 23 15:44 start_atlas.sh
2025-07-23 21:50:00 (5492): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 23 15:44 EVNT.45697488._000157.pool.root.1 -> /data/./ATLAS.root_0
2025-07-23 21:50:00 (5492): Guest Log: -rw-r--r--. 1 atlas atlas      2590 Jul 23 15:45 pandaJob.out
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas    978487 Jul 23 15:45 agis_schedconf.cvmfs.json
2025-07-23 21:50:00 (5492): Guest Log: drwx------. 4 atlas atlas      4096 Jul 23 15:45 pilot3
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas 303646309 Jul 23 19:48 HITS.45697490._003505.pool.root.1
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas        95 Jul 23 19:49 pilot_heartbeat.json
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas      1032 Jul 23 19:49 memory_monitor_summary.json
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas   1593041 Jul 23 19:49 agis_ddmendpoints.agis.ALL.json
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas    347501 Jul 23 19:49 log.45697490._003505.job.log.tgz.1
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas      7826 Jul 23 19:49 heartbeat.json
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas       744 Jul 23 19:49 pilotlog.txt
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas   1210755 Jul 23 19:49 log.45697490._003505.job.log.1
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas       357 Jul 23 19:49 output.list
2025-07-23 21:50:00 (5492): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 23 19:49 runtime_log
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas   1576960 Jul 23 19:49 result.tar.gz
2025-07-23 21:50:00 (5492): Guest Log: -rw-r--r--. 1 atlas atlas      8615 Jul 23 19:49 runtime_log.err
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas       665 Jul 23 19:49 i9gKDmQ4cy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTcvKDmxp0Zqn.diag
2025-07-23 21:50:00 (5492): Guest Log: Looking for outputfile HITS.45697490._003505.pool.root.1
2025-07-23 21:50:00 (5492): Guest Log: HITS file was successfully produced
2025-07-23 21:50:00 (5492): Guest Log: -rw-------. 1 atlas atlas 303646309 Jul 23 19:48 /home/atlas/RunAtlas/HITS.45697490._003505.pool.root.1
2025-07-23 21:50:02 (5492): Guest Log: Successfully finished the ATLAS job!
2025-07-23 21:50:02 (5492): Guest Log: Copying the results back to the shared directory!
2025-07-23 21:50:02 (5492): Guest Log:  *** Contents of shared directory: ***
2025-07-23 21:50:02 (5492): Guest Log: total 637944
2025-07-23 21:50:02 (5492): Guest Log: -rwxrwxrwx. 1 root root 347453166 Jul 23 15:44 ATLAS.root_0
2025-07-23 21:50:02 (5492): Guest Log: -rwxrwxrwx. 1 root root 303646309 Jul 23 19:50 HITS.pool.root.1
2025-07-23 21:50:02 (5492): Guest Log: -rwxrwxrwx. 1 root root      9157 Jul 23 15:44 init_data.xml
2025-07-23 21:50:02 (5492): Guest Log: -rwxrwxrwx. 1 root root    542908 Jul 23 15:43 input.tar.gz
2025-07-23 21:50:02 (5492): Guest Log: -rwxrwxrwx. 1 root root   1576960 Jul 23 19:50 result.tar.gz
2025-07-23 21:50:02 (5492): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 15:43 start_atlas.sh
2025-07-23 21:50:02 (5492): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-23 21:50:02 (5492): VM Completion File Detected.
2025-07-23 21:50:02 (5492): Powering off VM.
2025-07-23 21:50:03 (5492): Successfully stopped VM.
2025-07-23 21:50:03 (5492): Deregistering VM. (boinc_ee6aaca607ea8420, slot#0)
2025-07-23 21:50:03 (5492): Removing network bandwidth throttle group from VM.
2025-07-23 21:50:03 (5492): Removing VM from VirtualBox.
21:50:08 (5492): called boinc_finish(0)

</stderr_txt>
]]>

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