Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:38:28 (3930371): wrapper (7.7.26015): starting
23:38:28 (3930371): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 23:38:28] Arguments: --nthreads 12
[2025-07-22 23:38:28] Threads: 12
[2025-07-22 23:38:28] Checking for CVMFS
[2025-07-22 23:38:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 23:38:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 23:38:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 23:38:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 23:38:31] 2.11.5.0 6492 31034 209468 148649 1 284 29511288 45568000 19455 130560 0 255907135 99.764 182465541 25961 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-22 23:38:31] CVMFS is ok
[2025-07-22 23:38:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 23:38:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 23:38:31] Further information can be found at the LHC@home message board.
[2025-07-22 23:38:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 23:38:31] Checking for apptainer binary...
[2025-07-22 23:38:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 23:38:31] Running /usr/bin/apptainer --version
[2025-07-22 23:38:32] apptainer version 1.4.1-1.el9
[2025-07-22 23:38:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 23:38:32] wns0028.triumf.lcg
[2025-07-22 23:38:32] apptainer works
[2025-07-22 23:38:32] Set ATHENA_PROC_NUMBER=12
[2025-07-22 23:38:32] Set ATHENA_CORE_NUMBER=12
[2025-07-22 23:38:32] Starting ATLAS job with PandaID=6741674972
[2025-07-22 23:38:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 23:44:13]  *** The last 200 lines of the pilot log: ***
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | WARNING  | wrong length of table data, x=[1753252823.0], y=[1766.0] (must be same and length>=4)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | could have reported an average CPU frequency of 2628 MHz (4 samples)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | ..............................
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . Timing measurements:
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . get job = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . initial setup = 5 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . payload setup = 25 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . stage-in = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . payload execution = 78 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . stage-out = 2 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . log creation = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | ..............................
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 23:44:13] 2025-07-23 06:43:38,256 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741674972/pilotlog.txt
[2025-07-22 23:44:13] 2025-07-23 06:43:38,369 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 23:44:13] - Log from pilotlog.txt -
[2025-07-22 23:44:13] 2025-07-23 06:43:38,250 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741674972/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | INFO     | extracted standard info from prmon json
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | WARNING  | wrong length of table data, x=[1753252823.0], y=[1766.0] (must be same and length>=4)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | could have reported an average CPU frequency of 2628 MHz (4 samples)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | ..............................
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . Timing measurements:
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . get job = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . initial setup = 5 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . payload setup = 25 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . stage-in = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . payload execution = 78 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . stage-out = 2 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . log creation = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | ..............................
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 23:44:13] 2025-07-23 06:43:38,256 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741674972/pilotlog.txt
[2025-07-22 23:44:13] 2025-07-23 06:43:38,370 | WARNING  | 
[2025-07-22 23:44:13] [begin log extracts]
[2025-07-22 23:44:13] - Log from pilotlog.txt -
[2025-07-22 23:44:13] 2025-07-23 06:43:38,250 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741674972/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | INFO     | extracted standard info from prmon json
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 23:44:13] 2025-07-23 06:43:38,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | WARNING  | wrong length of table data, x=[1753252823.0], y=[1766.0] (must be same and length>=4)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | could have reported an average CPU frequency of 2628 MHz (4 samples)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | ..............................
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . Timing measurements:
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . get job = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . initial setup = 5 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . payload setup = 25 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . stage-in = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . payload execution = 78 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . stage-out = 2 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | . log creation = 0 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | ..............................
[2025-07-22 23:44:13] 2025-07-23 06:43:38,252 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 23:44:13] 2025-07-23 06:43:38,256 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741674972/pilotlog.txt
[2025-07-22 23:44:13] [end log extracts]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,370 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,371 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 23:44:13] 2025-07-23 06:43:38,387 | INFO     | PID=3935631 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 23:44:13] 2025-07-23 06:43:38,388 | INFO     | .. there are 35 such processes running
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | 
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | job summary report
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | --------------------------------------------------
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | PanDA job id: 6741674972
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | task id: 45697523
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 23:41:09,689 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 23:44:13] 2025-07-23 06:43:38,733 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | pilot state: failed 
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | transexitcode: 65
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | exeerrorcode: 65
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | exitcode: 65
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | cpuconsumptiontime: 19 s
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | nevents: 0
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | neventsw: 0
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | pid: 3949436
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | pgrp: 3949436
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | corecount: 12
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | event service: False
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | sizes: {0: 2397367, 1: 2397566, 11: 2397566, 15: 2397856, 22: 2397884, 108: 2421144, 109: 2421248, 112: 2425652, 245: 2425790}
[2025-07-22 23:44:13] 2025-07-23 06:43:38,734 | INFO     | --------------------------------------------------
[2025-07-22 23:44:13] 2025-07-23 06:43:38,735 | INFO     | 
[2025-07-22 23:44:13] 2025-07-23 06:43:38,735 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 23:44:13] 2025-07-23 06:43:38,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 23:44:13] 2025-07-23 06:43:38,842 | INFO     | job 6741674972 has completed (purged errors)
[2025-07-22 23:44:13] 2025-07-23 06:43:38,842 | INFO     | overall cleanup function is called
[2025-07-22 23:44:13] 2025-07-23 06:43:39,883 | INFO     | --- collectZombieJob: --- 10, [3949436]
[2025-07-22 23:44:13] 2025-07-23 06:43:39,883 | INFO     | zombie collector waiting for pid 3949436
[2025-07-22 23:44:13] 2025-07-23 06:43:39,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 23:44:13] 2025-07-23 06:43:39,883 | INFO     | collected zombie processes
[2025-07-22 23:44:13] 2025-07-23 06:43:39,883 | INFO     | will attempt to kill all subprocesses of pid=3949436
[2025-07-22 23:44:13] 2025-07-23 06:43:40,438 | INFO     | process IDs to be killed: [3949436] (in reverse order)
[2025-07-22 23:44:13] 2025-07-23 06:43:40,590 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 23:44:13] 2025-07-23 06:43:40,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 23:44:13] 2025-07-23 06:43:40,609 | INFO     | did not find any defunct processes belonging to 3949436
[2025-07-22 23:44:13] 2025-07-23 06:43:40,627 | INFO     | did not find any defunct processes belonging to 3949436
[2025-07-22 23:44:13] 2025-07-23 06:43:40,627 | INFO     | ready for new job
[2025-07-22 23:44:13] 2025-07-23 06:43:40,627 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 23:44:13] 2025-07-23 06:43:40,628 | INFO     | ***************************************
[2025-07-22 23:44:13] 2025-07-23 06:43:40,628 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 23:44:13] 2025-07-23 06:43:40,628 | INFO     | ***************************************
[2025-07-22 23:44:13] 2025-07-23 06:43:40,628 | INFO     | 
[2025-07-22 23:44:13] 2025-07-23 06:43:40,650 | INFO     | architecture information:
[2025-07-22 23:44:13] 2025-07-23 06:43:40,663 | INFO     | executing command: cat /etc/os-release
[2025-07-22 23:44:13] 2025-07-23 06:43:40,720 | INFO     | cat /etc/os-release:
[2025-07-22 23:44:13] NAME="CentOS Linux"
[2025-07-22 23:44:13] VERSION="7 (Core)"
[2025-07-22 23:44:13] ID="centos"
[2025-07-22 23:44:13] ID_LIKE="rhel fedora"
[2025-07-22 23:44:13] VERSION_ID="7"
[2025-07-22 23:44:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 23:44:13] ANSI_COLOR="0;31"
[2025-07-22 23:44:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 23:44:13] HOME_URL="https://www.centos.org/"
[2025-07-22 23:44:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 23:44:13] 
[2025-07-22 23:44:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 23:44:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 23:44:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 23:44:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 23:44:13] 
[2025-07-22 23:44:13] 2025-07-23 06:43:40,720 | INFO     | ***************************************
[2025-07-22 23:44:13] 2025-07-23 06:43:41,224 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 23:44:13] 2025-07-23 06:43:41,240 | INFO     | sufficient remaining disk space (2015450103808 B)
[2025-07-22 23:44:13] 2025-07-23 06:43:41,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 23:44:13] 2025-07-23 06:43:41,241 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 23:44:13] 2025-07-23 06:43:41,241 | INFO     | update_server=False
[2025-07-22 23:44:13] 2025-07-23 06:43:41,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 23:44:13] 2025-07-23 06:43:41,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 23:44:13] 2025-07-23 06:43:41,246 | INFO     | aborting loop
[2025-07-22 23:44:13] 2025-07-23 06:43:41,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 23:44:13] 2025-07-23 06:43:42,057 | INFO     | all job control threads have been joined
[2025-07-22 23:44:13] 2025-07-23 06:43:42,107 | INFO     | all data control threads have been joined
[2025-07-22 23:44:13] 2025-07-23 06:43:42,248 | INFO     | [job] retrieve thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,252 | INFO     | [job] job monitor thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,263 | INFO     | [data] copytool_in thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,462 | INFO     | [payload] validate_post thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,556 | INFO     | all payload control threads have been joined
[2025-07-22 23:44:13] 2025-07-23 06:43:42,644 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,715 | INFO     | [job] validate thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,864 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:42,881 | INFO     | [payload] failed_post thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,064 | INFO     | [job] control thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,113 | INFO     | [data] control thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 23:44:13] 2025-07-23 06:43:43,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,543 | INFO     | [data] copytool_out thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,562 | INFO     | [payload] control thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,607 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:43,756 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 23:44:13] 2025-07-23 06:43:44,762 | INFO     | [job] queue monitor thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:47,267 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 23:44:13] 2025-07-23 06:43:48,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171764143936)>', '<ExcThread(monitor, started 140170930145024)>']
[2025-07-22 23:44:13] 2025-07-23 06:43:53,512 | INFO     | all workflow threads have been joined
[2025-07-22 23:44:13] 2025-07-23 06:43:53,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 23:44:13] 2025-07-23 06:43:53,512 | INFO     | traces error code: 0
[2025-07-22 23:44:13] 2025-07-23 06:43:53,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 23:44:13] 2025-07-23 06:44:11,448 | INFO     | PID=3935631 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 23:44:13] 2025-07-23 06:44:11,449 | INFO     | .. there are 35 such processes running
[2025-07-22 23:44:13] 2025-07-23 06:44:11,450 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 23:44:13] 2025-07-23 06:44:11,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 23:44:13] 2025-07-23 06:44:11,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 23:44:13] 2025-07-23 06:44:11,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 23:44:13] 2025-07-23 06:44:11,450 | INFO     | [monitor] control thread has ended
[2025-07-22 23:44:13] 2025-07-23 06:44:11,700 [wrapper] ==== pilot stdout END ====
[2025-07-22 23:44:13] 2025-07-23 06:44:11,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 23:44:13] 2025-07-23 06:44:11,733 [wrapper] pilotpid: 3935631
[2025-07-22 23:44:13] 2025-07-23 06:44:11,735 [wrapper] Pilot exit status: 0
[2025-07-22 23:44:13] 2025-07-23 06:44:11,773 [wrapper] pandaids: 6741674972
[2025-07-22 23:44:13] 2025-07-23 06:44:12,089 [wrapper] cleanup supervisor_pilot 3935639 3935632
[2025-07-22 23:44:13] 2025-07-23 06:44:12,104 [wrapper] Test setup, not cleaning
[2025-07-22 23:44:13] 2025-07-23 06:44:12,111 [wrapper] apfmon messages muted
[2025-07-22 23:44:13] 2025-07-23 06:44:12,138 [wrapper] ==== wrapper stdout END ====
[2025-07-22 23:44:13] 2025-07-23 06:44:12,171 [wrapper] ==== wrapper stderr END ====
[2025-07-22 23:44:13]  *** Error codes and diagnostics ***
[2025-07-22 23:44:13]     "exeErrorCode": 65,
[2025-07-22 23:44:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 23:44:13]     "pilotErrorCode": 1305,
[2025-07-22 23:44:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 23:44:13]  *** Listing of results directory ***
[2025-07-22 23:44:13] total 314104
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc    530466 Jul 21 13:13 pilot3.tar.gz
[2025-07-22 23:44:13] -rwx------. 1 boinc boinc     36292 Jul 21 13:16 runpilot2-wrapper.sh
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc      5112 Jul 21 13:16 queuedata.json
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc       100 Jul 22 23:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 23:44:13] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 23:38 run_atlas
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc       105 Jul 22 23:38 job.xml
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc      6596 Jul 22 23:38 init_data.xml
[2025-07-22 23:44:13] -rw-r--r--. 2 boinc boinc 317561974 Jul 22 23:38 EVNT.45697521._000003.pool.root.1
[2025-07-22 23:44:13] -rw-r--r--. 2 boinc boinc     15095 Jul 22 23:38 start_atlas.sh
[2025-07-22 23:44:13] drwxrwx--x. 2 boinc boinc      4096 Jul 22 23:38 shared
[2025-07-22 23:44:13] -rw-r--r--. 2 boinc boinc    542894 Jul 22 23:38 input.tar.gz
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc         0 Jul 22 23:38 boinc_lockfile
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc      2629 Jul 22 23:38 pandaJob.out
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc    977736 Jul 22 23:38 agis_schedconf.cvmfs.json
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc   1593041 Jul 22 23:38 agis_ddmendpoints.agis.ALL.json
[2025-07-22 23:44:13] drwx------. 4 boinc boinc      4096 Jul 22 23:38 pilot3
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc       524 Jul 22 23:41 boinc_task_state.xml
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc       952 Jul 22 23:41 memory_monitor_summary.json
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc     21935 Jul 22 23:41 log.45697523._000095.job.log.tgz.1
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc      8381 Jul 22 23:43 heartbeat.json
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc      8192 Jul 22 23:44 boinc_mmap_file
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc        23 Jul 22 23:44 wrapper_checkpoint.txt
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc        95 Jul 22 23:44 pilot_heartbeat.json
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc       823 Jul 22 23:44 pilotlog.txt
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc     82112 Jul 22 23:44 log.45697523._000095.job.log.1
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc       188 Jul 22 23:44 output.list
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc       620 Jul 22 23:44 runtime_log
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc    122880 Jul 22 23:44 result.tar.gz
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc      8485 Jul 22 23:44 runtime_log.err
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc       646 Jul 22 23:44 DO9NDma7By7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpvsKDmzt8qGn.diag
[2025-07-22 23:44:13] -rw-r--r--. 1 boinc boinc     21934 Jul 22 23:44 stderr.txt
[2025-07-22 23:44:13] No HITS result produced
[2025-07-22 23:44:13]  *** Contents of shared directory: ***
[2025-07-22 23:44:13] total 310792
[2025-07-22 23:44:13] -rw-r--r--. 2 boinc boinc 317561974 Jul 22 23:38 ATLAS.root_0
[2025-07-22 23:44:13] -rw-r--r--. 2 boinc boinc     15095 Jul 22 23:38 start_atlas.sh
[2025-07-22 23:44:13] -rw-r--r--. 2 boinc boinc    542894 Jul 22 23:38 input.tar.gz
[2025-07-22 23:44:13] -rw-------. 1 boinc boinc    122880 Jul 22 23:44 result.tar.gz
23:44:14 (3930371): run_atlas exited; CPU time 29.001314
23:44:14 (3930371): called boinc_finish(0)

</stderr_txt>
]]>

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