Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-24 15:50:23 (1084): Detected: vboxwrapper 26206
2025-07-24 15:50:23 (1084): Detected: BOINC client v7.16.20
2025-07-24 15:50:23 (1084): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-07-24 15:50:24 (1084): Successfully copied 'init_data.xml' to the shared directory.
2025-07-24 15:50:24 (1084): Create VM. (boinc_66c26c91c10e9c7d, slot#0)
2025-07-24 15:50:25 (1084): Setting Memory Size for VM. (4800MB)
2025-07-24 15:50:25 (1084): Setting CPU Count for VM. (8)
2025-07-24 15:50:25 (1084): Setting Chipset Options for VM.
2025-07-24 15:50:26 (1084): Setting Graphics Controller Options for VM.
2025-07-24 15:50:26 (1084): Setting Boot Options for VM.
2025-07-24 15:50:26 (1084): Setting Network Configuration for NAT.
2025-07-24 15:50:26 (1084): Enabling VM Network Access.
2025-07-24 15:50:27 (1084): Disabling USB Support for VM.
2025-07-24 15:50:27 (1084): Disabling COM Port Support for VM.
2025-07-24 15:50:27 (1084): Disabling LPT Port Support for VM.
2025-07-24 15:50:27 (1084): Disabling Audio Support for VM.
2025-07-24 15:50:28 (1084): Disabling Clipboard Support for VM.
2025-07-24 15:50:28 (1084): Disabling Drag and Drop Support for VM.
2025-07-24 15:50:28 (1084): Adding storage controller(s) to VM.
2025-07-24 15:50:28 (1084): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-24 15:50:30 (1084): Adding VirtualBox Guest Additions to VM.
2025-07-24 15:50:30 (1084): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-24 15:50:30 (1084): forwarding host port 63815 to guest port 80
2025-07-24 15:50:30 (1084): Enabling remote desktop for VM.
2025-07-24 15:50:31 (1084): Required extension pack not installed, remote desktop not enabled.
2025-07-24 15:50:31 (1084): Enabling shared directory for VM.
2025-07-24 15:50:31 (1084): Starting VM using VBoxManage interface. (boinc_66c26c91c10e9c7d, slot#0)
2025-07-24 15:50:36 (1084): Successfully started VM. (PID = '10100')
2025-07-24 15:50:36 (1084): Reporting VM Process ID to BOINC.
2025-07-24 15:50:36 (1084): Guest Log: BIOS: VirtualBox 6.0.14
2025-07-24 15:50:36 (1084): Guest Log: CPUID EDX: 0x178bfbff
2025-07-24 15:50:36 (1084): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-24 15:50:36 (1084): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-24 15:50:36 (1084): Detected: Web Application Enabled (http://localhost:63815)
2025-07-24 15:50:36 (1084): Preference change detected
2025-07-24 15:50:36 (1084): Setting CPU throttle for VM. (100%)
2025-07-24 15:50:37 (1084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-24 15:50:38 (1084): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-24 15:50:38 (1084): Guest Log: BIOS: Booting from Hard Disk...
2025-07-24 15:50:41 (1084): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-24 15:50:41 (1084): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-24 15:50:41 (1084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-24 15:50:54 (1084): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-24 15:50:54 (1084): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-24 15:51:15 (1084): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000322 main     Log opened 2025-07-24T15:51:13.962655000Z
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000498 main     OS Product: Linux
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000576 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000633 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000687 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000689 main     Process ID: 1385
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.000691 main     Package type: LINUX_64BITS_GENERIC
2025-07-24 15:51:15 (1084): Guest Log: 00:00:00.002448 main     5.2.32 r132073 started. Verbose level = 0
2025-07-24 15:51:16 (1084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-24 15:51:16 (1084): Guest Log: [INFO] Mounting shared directory
2025-07-24 15:51:16 (1084): Guest Log: [INFO] Checking for init_data.xml
2025-07-24 15:51:25 (1084): Guest Log: 00:00:10.007137 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 388 422 000ns (GuestNow=1 753 343 485 579 490 000 ns GuestLast=1 753 372 273 967 912 000 ns fSetTimeLastLoop=true )
2025-07-24 15:51:41 (1084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-24 15:51:41 (1084): Guest Log: [INFO] Detected branch: prod
2025-07-24 15:51:41 (1084): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-24 15:51:41 (1084): Guest Log: Copying input files
2025-07-24 15:51:47 (1084): Guest Log: Copied input files into RunAtlas.
2025-07-24 15:51:47 (1084): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-24 15:51:47 (1084): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-24 15:51:48 (1084): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-24 15:51:48 (1084): Guest Log: Further information can be found at the LHC@home message board.
2025-07-24 15:52:23 (1084): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-24 15:52:24 (1084): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-24 15:52:24 (1084): Guest Log: 2.6.3.0 1668 0 30164 148686 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-24 15:52:29 (1084): Guest Log: copied the webapp to /var/www
2025-07-24 15:52:29 (1084): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-24 15:52:29 (1084): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-24 15:52:29 (1084): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-24 15:52:29 (1084): Guest Log:  *** Starting ATLAS job. (PandaID=6742271793 taskID=45697532) ***
2025-07-24 16:34:47 (1084): Preference change detected
2025-07-24 16:34:47 (1084): Setting CPU throttle for VM. (100%)
2025-07-24 16:34:47 (1084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-24 17:30:42 (1084): Status Report: Elapsed Time: '6000.000000'
2025-07-24 17:30:42 (1084): Status Report: CPU Time: '28516.734375'
2025-07-24 19:10:48 (1084): Status Report: Elapsed Time: '12000.000000'
2025-07-24 19:10:48 (1084): Status Report: CPU Time: '76170.328125'
2025-07-24 20:40:51 (1084): Guest Log:  *** Job finished ***
2025-07-24 20:40:51 (1084): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:40,896 | INFO     | [payload] control thread has finished
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:41,721 | INFO     | [data] copytool_out thread has finished
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:43,243 | INFO     | [data] queue_monitor thread has finished
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:44,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668777465664)>', '<ExcThread(monitor, started 139667965994752)>']
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:44,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:44,453 | INFO     | [monitor] control thread has ended
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,149 | INFO     | all workflow threads have been joined
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,149 | INFO     | end of generic workflow (traces error code: 0)
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,150 | INFO     | traces error code: 0
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,357 [wrapper] ==== pilot stdout END ====
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,371 [wrapper] ==== wrapper stdout RESUME ====
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,384 [wrapper] pilotpid: 6044
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:49,397 [wrapper] Pilot exit status: 0
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:50,241 [wrapper] pandaids: 6742271793
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:50,318 [wrapper] cleanup supervisor_pilot 16545 6045
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:50,330 [wrapper] Test setup, not cleaning
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:50,346 [wrapper] apfmon messages muted
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:50,358 [wrapper] ==== wrapper stdout END ====
2025-07-24 20:40:51 (1084): Guest Log: 2025-07-24 12:40:50,369 [wrapper] ==== wrapper stderr END ====
2025-07-24 20:40:51 (1084): Guest Log:  *** Error codes and diagnostics ***
2025-07-24 20:40:51 (1084): Guest Log:     "exeErrorCode": 0,
2025-07-24 20:40:51 (1084): Guest Log:     "exeErrorDiag": "",
2025-07-24 20:40:51 (1084): Guest Log:     "pilotErrorCode": 0,
2025-07-24 20:40:51 (1084): Guest Log:     "pilotErrorDiag": "",
2025-07-24 20:40:51 (1084): Guest Log:  *** Listing of results directory ***
2025-07-24 20:40:52 (1084): Guest Log: total 276980
2025-07-24 20:40:52 (1084): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 22 12:22 pilot3.tar.gz
2025-07-24 20:40:52 (1084): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 22 12:50 queuedata.json
2025-07-24 20:40:52 (1084): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 22 12:51 runpilot2-wrapper.sh
2025-07-24 20:40:52 (1084): Guest Log: -rwxr-xr-x. 1 atlas atlas      6001 Jul 24 07:51 init_data.xml
2025-07-24 20:40:52 (1084): Guest Log: -rwxr-xr-x. 1 atlas atlas    542908 Jul 24 07:51 input.tar.gz
2025-07-24 20:40:52 (1084): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 24 07:51 start_atlas.sh
2025-07-24 20:40:52 (1084): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 24 07:51 EVNT.45697530._000215.pool.root.1 -> /data/./ATLAS.root_0
2025-07-24 20:40:52 (1084): Guest Log: -rw-r--r--. 1 atlas atlas      2614 Jul 24 07:52 pandaJob.out
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas    978866 Jul 24 07:54 agis_schedconf.cvmfs.json
2025-07-24 20:40:52 (1084): Guest Log: drwx------. 4 atlas atlas      4096 Jul 24 07:55 pilot3
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas 276278234 Jul 24 12:39 HITS.45697532._005423.pool.root.1
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas      1036 Jul 24 12:40 memory_monitor_summary.json
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas        95 Jul 24 12:40 pilot_heartbeat.json
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas   1593041 Jul 24 12:40 agis_ddmendpoints.agis.ALL.json
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas    397541 Jul 24 12:40 log.45697532._005423.job.log.tgz.1
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas      7854 Jul 24 12:40 heartbeat.json
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 24 12:40 pilotlog.txt
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas   1371317 Jul 24 12:40 log.45697532._005423.job.log.1
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas       357 Jul 24 12:40 output.list
2025-07-24 20:40:52 (1084): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 24 12:40 runtime_log
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas   1792000 Jul 24 12:40 result.tar.gz
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas       662 Jul 24 12:40 S75MDmvdRy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0OJLDmRycaYm.diag
2025-07-24 20:40:52 (1084): Guest Log: -rw-r--r--. 1 atlas atlas      8606 Jul 24 12:40 runtime_log.err
2025-07-24 20:40:52 (1084): Guest Log: Looking for outputfile HITS.45697532._005423.pool.root.1
2025-07-24 20:40:52 (1084): Guest Log: HITS file was successfully produced
2025-07-24 20:40:52 (1084): Guest Log: -rw-------. 1 atlas atlas 276278234 Jul 24 12:39 /home/atlas/RunAtlas/HITS.45697532._005423.pool.root.1
2025-07-24 20:40:54 (1084): Guest Log: Successfully finished the ATLAS job!
2025-07-24 20:40:54 (1084): Guest Log: Copying the results back to the shared directory!
2025-07-24 20:40:54 (1084): Guest Log:  *** Contents of shared directory: ***
2025-07-24 20:40:56 (1084): Guest Log: total 594996
2025-07-24 20:40:56 (1084): Guest Log: -rwxrwxrwx. 1 root root 330631162 Jul 24 07:50 ATLAS.root_0
2025-07-24 20:40:56 (1084): Guest Log: -rwxrwxrwx. 1 root root 276278234 Jul 24 12:40 HITS.pool.root.1
2025-07-24 20:40:56 (1084): Guest Log: -rwxrwxrwx. 1 root root      6001 Jul 24 07:50 init_data.xml
2025-07-24 20:40:56 (1084): Guest Log: -rwxrwxrwx. 1 root root    542908 Jul 23 04:41 input.tar.gz
2025-07-24 20:40:56 (1084): Guest Log: -rwxrwxrwx. 1 root root   1792000 Jul 24 12:40 result.tar.gz
2025-07-24 20:40:56 (1084): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 04:41 start_atlas.sh
2025-07-24 20:40:56 (1084): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-24 20:40:56 (1084): VM Completion File Detected.
2025-07-24 20:40:56 (1084): Powering off VM.
2025-07-24 20:40:57 (1084): Successfully stopped VM.
2025-07-24 20:40:57 (1084): Deregistering VM. (boinc_66c26c91c10e9c7d, slot#0)
2025-07-24 20:40:57 (1084): Removing network bandwidth throttle group from VM.
2025-07-24 20:40:57 (1084): Removing VM from VirtualBox.
20:41:03 (1084): called boinc_finish(0)

</stderr_txt>
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