Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-24 11:56:37 (8348): Detected: vboxwrapper 26206
2025-07-24 11:56:37 (8348): Detected: BOINC client v7.16.20
2025-07-24 11:56:38 (8348): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-07-24 11:56:38 (8348): Successfully copied 'init_data.xml' to the shared directory.
2025-07-24 11:56:39 (8348): Create VM. (boinc_53dda8d6bbf86258, slot#0)
2025-07-24 11:56:39 (8348): Setting Memory Size for VM. (4800MB)
2025-07-24 11:56:40 (8348): Setting CPU Count for VM. (8)
2025-07-24 11:56:40 (8348): Setting Chipset Options for VM.
2025-07-24 11:56:40 (8348): Setting Graphics Controller Options for VM.
2025-07-24 11:56:40 (8348): Setting Boot Options for VM.
2025-07-24 11:56:41 (8348): Setting Network Configuration for NAT.
2025-07-24 11:56:41 (8348): Enabling VM Network Access.
2025-07-24 11:56:41 (8348): Disabling USB Support for VM.
2025-07-24 11:56:41 (8348): Disabling COM Port Support for VM.
2025-07-24 11:56:42 (8348): Disabling LPT Port Support for VM.
2025-07-24 11:56:42 (8348): Disabling Audio Support for VM.
2025-07-24 11:56:42 (8348): Disabling Clipboard Support for VM.
2025-07-24 11:56:42 (8348): Disabling Drag and Drop Support for VM.
2025-07-24 11:56:43 (8348): Adding storage controller(s) to VM.
2025-07-24 11:56:43 (8348): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-24 11:56:44 (8348): Adding VirtualBox Guest Additions to VM.
2025-07-24 11:56:44 (8348): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-24 11:56:45 (8348): forwarding host port 62427 to guest port 80
2025-07-24 11:56:45 (8348): Enabling remote desktop for VM.
2025-07-24 11:56:45 (8348): Required extension pack not installed, remote desktop not enabled.
2025-07-24 11:56:45 (8348): Enabling shared directory for VM.
2025-07-24 11:56:46 (8348): Starting VM using VBoxManage interface. (boinc_53dda8d6bbf86258, slot#0)
2025-07-24 11:56:51 (8348): Successfully started VM. (PID = '7448')
2025-07-24 11:56:51 (8348): Reporting VM Process ID to BOINC.
2025-07-24 11:56:51 (8348): Guest Log: BIOS: VirtualBox 6.0.14
2025-07-24 11:56:51 (8348): Guest Log: CPUID EDX: 0x178bfbff
2025-07-24 11:56:51 (8348): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-24 11:56:51 (8348): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-24 11:56:51 (8348): Detected: Web Application Enabled (http://localhost:62427)
2025-07-24 11:56:51 (8348): Preference change detected
2025-07-24 11:56:51 (8348): Setting CPU throttle for VM. (100%)
2025-07-24 11:56:51 (8348): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-24 11:56:53 (8348): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-24 11:56:53 (8348): Guest Log: BIOS: Booting from Hard Disk...
2025-07-24 11:56:56 (8348): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-24 11:56:56 (8348): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-24 11:56:56 (8348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-24 11:57:09 (8348): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-24 11:57:09 (8348): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-24 11:57:30 (8348): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000291 main     Log opened 2025-07-24T11:57:29.135472000Z
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000511 main     OS Product: Linux
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000589 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000645 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000723 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000725 main     Process ID: 1367
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.000726 main     Package type: LINUX_64BITS_GENERIC
2025-07-24 11:57:30 (8348): Guest Log: 00:00:00.002343 main     5.2.32 r132073 started. Verbose level = 0
2025-07-24 11:57:31 (8348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-24 11:57:31 (8348): Guest Log: [INFO] Mounting shared directory
2025-07-24 11:57:31 (8348): Guest Log: [INFO] Checking for init_data.xml
2025-07-24 11:57:40 (8348): Guest Log: 00:00:10.008469 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 789 045 807 000ns (GuestNow=1 753 329 460 094 391 000 ns GuestLast=1 753 358 249 140 198 000 ns fSetTimeLastLoop=true )
2025-07-24 11:57:57 (8348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-24 11:57:57 (8348): Guest Log: [INFO] Detected branch: prod
2025-07-24 11:57:57 (8348): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-24 11:57:57 (8348): Guest Log: Copying input files
2025-07-24 11:58:00 (8348): Guest Log: Copied input files into RunAtlas.
2025-07-24 11:58:00 (8348): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-24 11:58:00 (8348): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-24 11:58:00 (8348): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-24 11:58:00 (8348): Guest Log: Further information can be found at the LHC@home message board.
2025-07-24 11:58:35 (8348): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-24 11:58:40 (8348): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-24 11:58:40 (8348): Guest Log: 2.6.3.0 1649 0 32156 148681 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-24 11:58:44 (8348): Guest Log: copied the webapp to /var/www
2025-07-24 11:58:44 (8348): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-24 11:58:44 (8348): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-24 11:58:45 (8348): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-24 11:58:45 (8348): Guest Log:  *** Starting ATLAS job. (PandaID=6742500362 taskID=45697541) ***
2025-07-24 12:17:49 (8348): Guest Log:  *** Job finished ***
2025-07-24 12:17:49 (8348): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:26,904 | INFO     | end of generic workflow (traces error code: 0)
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:26,904 | INFO     | traces error code: 0
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:26,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,413 | INFO     | PID=6057 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,414 | INFO     | found 0 job(s) in 20 queues
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,415 | CRITICAL | thread 'MainThread' is not alive
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,415 | INFO     | [monitor] control thread has ended
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,546 [wrapper] ==== pilot stdout END ====
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,560 [wrapper] ==== wrapper stdout RESUME ====
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,572 [wrapper] pilotpid: 6057
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,585 [wrapper] Pilot exit status: 0
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,741 [wrapper] pandaids: 6742500362
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,813 [wrapper] cleanup supervisor_pilot 19255 6058
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,825 [wrapper] Test setup, not cleaning
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,837 [wrapper] apfmon messages muted
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,848 [wrapper] ==== wrapper stdout END ====
2025-07-24 12:17:49 (8348): Guest Log: 2025-07-24 04:17:47,860 [wrapper] ==== wrapper stderr END ====
2025-07-24 12:17:49 (8348): Guest Log:  *** Error codes and diagnostics ***
2025-07-24 12:17:49 (8348): Guest Log:     "exeErrorCode": 65,
2025-07-24 12:17:49 (8348): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitialize(): standard std::exception is caught\"",
2025-07-24 12:17:49 (8348): Guest Log:     "pilotErrorCode": 1305,
2025-07-24 12:17:49 (8348): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitia",
2025-07-24 12:17:49 (8348): Guest Log:  *** Listing of results directory ***
2025-07-24 12:17:49 (8348): Guest Log: total 4076
2025-07-24 12:17:49 (8348): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 22 15:14 pilot3.tar.gz
2025-07-24 12:17:49 (8348): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 22 16:18 queuedata.json
2025-07-24 12:17:49 (8348): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 22 16:19 runpilot2-wrapper.sh
2025-07-24 12:17:49 (8348): Guest Log: -rwxr-xr-x. 1 atlas atlas    6001 Jul 24 03:57 init_data.xml
2025-07-24 12:17:49 (8348): Guest Log: -rwxr-xr-x. 1 atlas atlas  542904 Jul 24 03:57 input.tar.gz
2025-07-24 12:17:49 (8348): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 24 03:57 start_atlas.sh
2025-07-24 12:17:49 (8348): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 24 03:57 EVNT.45697539._000200.pool.root.1 -> /data/./ATLAS.root_0
2025-07-24 12:17:49 (8348): Guest Log: -rw-r--r--. 1 atlas atlas    2592 Jul 24 03:58 pandaJob.out
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas  979640 Jul 24 04:02 agis_schedconf.cvmfs.json
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas 1593041 Jul 24 04:02 agis_ddmendpoints.agis.ALL.json
2025-07-24 12:17:49 (8348): Guest Log: drwx------. 4 atlas atlas    4096 Jul 24 04:03 pilot3
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas    1015 Jul 24 04:14 memory_monitor_summary.json
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas   53597 Jul 24 04:15 log.45697541._001504.job.log.tgz.1
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas   10073 Jul 24 04:17 heartbeat.json
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas      95 Jul 24 04:17 pilot_heartbeat.json
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas     814 Jul 24 04:17 pilotlog.txt
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas  128105 Jul 24 04:17 log.45697541._001504.job.log.1
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas     188 Jul 24 04:17 output.list
2025-07-24 12:17:49 (8348): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 24 04:17 runtime_log
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas  204800 Jul 24 04:17 result.tar.gz
2025-07-24 12:17:49 (8348): Guest Log: -rw-r--r--. 1 atlas atlas    8453 Jul 24 04:17 runtime_log.err
2025-07-24 12:17:49 (8348): Guest Log: -rw-------. 1 atlas atlas     647 Jul 24 04:17 NrpMDmotUy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBAvKDmyoJpHo.diag
2025-07-24 12:17:49 (8348): Guest Log: Looking for outputfile HITS.45697541._001504.pool.root.1
2025-07-24 12:17:49 (8348): Guest Log: No HITS file was produced
2025-07-24 12:17:49 (8348): Guest Log: Successfully finished the ATLAS job!
2025-07-24 12:17:49 (8348): Guest Log: Copying the results back to the shared directory!
2025-07-24 12:17:49 (8348): Guest Log:  *** Contents of shared directory: ***
2025-07-24 12:17:49 (8348): Guest Log: total 337180
2025-07-24 12:17:49 (8348): Guest Log: -rwxrwxrwx. 1 root root 344494677 Jul 24 03:56 ATLAS.root_0
2025-07-24 12:17:49 (8348): Guest Log: -rwxrwxrwx. 1 root root      6001 Jul 24 03:56 init_data.xml
2025-07-24 12:17:49 (8348): Guest Log: -rwxrwxrwx. 1 root root    542904 Jul 23 05:11 input.tar.gz
2025-07-24 12:17:49 (8348): Guest Log: -rwxrwxrwx. 1 root root    204800 Jul 24 04:17 result.tar.gz
2025-07-24 12:17:49 (8348): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 05:11 start_atlas.sh
2025-07-24 12:17:49 (8348): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-24 12:17:49 (8348): VM Completion File Detected.
2025-07-24 12:17:49 (8348): Powering off VM.
2025-07-24 12:17:50 (8348): Successfully stopped VM.
2025-07-24 12:17:50 (8348): Deregistering VM. (boinc_53dda8d6bbf86258, slot#0)
2025-07-24 12:17:50 (8348): Removing network bandwidth throttle group from VM.
2025-07-24 12:17:50 (8348): Removing VM from VirtualBox.
12:17:56 (8348): called boinc_finish(0)

</stderr_txt>
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