Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 13:27:21 (9832): Detected: vboxwrapper 26206
2025-07-26 13:27:21 (9832): Detected: BOINC client v8.0.2
2025-07-26 13:27:21 (9832): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-26 13:27:22 (9832): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 13:27:22 (9832): Create VM. (boinc_96bcf23f835d471b, slot#7)
2025-07-26 13:27:23 (9832): Setting Memory Size for VM. (4700MB)
2025-07-26 13:27:23 (9832): Setting CPU Count for VM. (7)
2025-07-26 13:27:23 (9832): Setting Chipset Options for VM.
2025-07-26 13:27:23 (9832): Setting Graphics Controller Options for VM.
2025-07-26 13:27:24 (9832): Setting Boot Options for VM.
2025-07-26 13:27:24 (9832): Setting Network Configuration for NAT.
2025-07-26 13:27:24 (9832): Enabling VM Network Access.
2025-07-26 13:27:24 (9832): Disabling USB Support for VM.
2025-07-26 13:27:25 (9832): Disabling COM Port Support for VM.
2025-07-26 13:27:25 (9832): Disabling LPT Port Support for VM.
2025-07-26 13:27:25 (9832): Disabling Audio Support for VM.
2025-07-26 13:27:25 (9832): Disabling Clipboard Support for VM.
2025-07-26 13:27:26 (9832): Disabling Drag and Drop Support for VM.
2025-07-26 13:27:26 (9832): Adding storage controller(s) to VM.
2025-07-26 13:27:26 (9832): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 13:27:29 (9832): Adding VirtualBox Guest Additions to VM.
2025-07-26 13:27:29 (9832): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 13:27:29 (9832): forwarding host port 64091 to guest port 80
2025-07-26 13:27:30 (9832): Enabling remote desktop for VM.
2025-07-26 13:27:30 (9832): Required extension pack not installed, remote desktop not enabled.
2025-07-26 13:27:30 (9832): Enabling shared directory for VM.
2025-07-26 13:27:30 (9832): Starting VM using VBoxManage interface. (boinc_96bcf23f835d471b, slot#7)
2025-07-26 13:27:37 (9832): Successfully started VM. (PID = '2532')
2025-07-26 13:27:37 (9832): Reporting VM Process ID to BOINC.
2025-07-26 13:27:37 (9832): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-26 13:27:37 (9832): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 13:27:37 (9832): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 13:27:37 (9832): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 13:27:37 (9832): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 13:27:37 (9832): Detected: Web Application Enabled (http://localhost:64091)
2025-07-26 13:27:37 (9832): Preference change detected
2025-07-26 13:27:37 (9832): Setting CPU throttle for VM. (100%)
2025-07-26 13:27:37 (9832): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 13:27:39 (9832): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 13:27:39 (9832): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 13:27:42 (9832): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 13:27:42 (9832): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 13:27:42 (9832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 13:27:51 (9832): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 13:27:51 (9832): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 13:28:00 (9832): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000217 main     Log opened 2025-07-26T13:27:57.594371000Z
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000368 main     OS Product: Linux
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000409 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000442 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000475 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000477 main     Process ID: 1351
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.000478 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 13:28:00 (9832): Guest Log: 00:00:00.001736 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 13:28:00 (9832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 13:28:00 (9832): Guest Log: [INFO] Mounting shared directory
2025-07-26 13:28:00 (9832): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 13:28:08 (9832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 13:28:08 (9832): Guest Log: [INFO] Detected branch: prod
2025-07-26 13:28:08 (9832): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 13:28:08 (9832): Guest Log: Copying input files
2025-07-26 13:28:10 (9832): Guest Log: 00:00:10.021833 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 639 214 000ns (GuestNow=1 753 550 889 236 579 000 ns GuestLast=1 753 536 477 597 365 000 ns fSetTimeLastLoop=true )
2025-07-26 13:28:10 (9832): Guest Log: Copied input files into RunAtlas.
2025-07-26 13:28:10 (9832): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 13:28:10 (9832): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 13:28:10 (9832): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 13:28:10 (9832): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 13:28:19 (9832): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 13:28:19 (9832): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 13:28:19 (9832): Guest Log: 2.6.3.0 1651 0 30140 148784 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 13:28:20 (9832): Guest Log: copied the webapp to /var/www
2025-07-26 13:28:20 (9832): Guest Log: ATHENA_PROC_NUMBER=7
2025-07-26 13:28:20 (9832): Guest Log: ATHENA_CORE_NUMBER=7
2025-07-26 13:28:20 (9832): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 13:28:20 (9832): Guest Log:  *** Starting ATLAS job. (PandaID=6742554675 taskID=45697541) ***
2025-07-26 15:07:45 (9832): Status Report: Elapsed Time: '6000.000000'
2025-07-26 15:07:45 (9832): Status Report: CPU Time: '5789.937500'
2025-07-26 16:47:54 (9832): Status Report: Elapsed Time: '12000.000000'
2025-07-26 16:47:54 (9832): Status Report: CPU Time: '11761.609375'
2025-07-26 18:28:03 (9832): Status Report: Elapsed Time: '18000.000000'
2025-07-26 18:28:03 (9832): Status Report: CPU Time: '17740.890625'
2025-07-26 20:08:12 (9832): Status Report: Elapsed Time: '24000.000000'
2025-07-26 20:08:12 (9832): Status Report: CPU Time: '23691.890625'
2025-07-26 21:30:34 (9832): Guest Log:  *** Job finished ***
2025-07-26 21:30:34 (9832): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:19,812 | INFO     | [data] queue_monitor thread has finished
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:26,280 | INFO     | job.realtimelogging is not enabled
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:27,290 | INFO     | [payload] run_realtimelog thread has finished
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:28,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642056521536)>', '<ExcThread(monitor, started 140641312958208)>']
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:29,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:29,329 | INFO     | [monitor] control thread has ended
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,416 | INFO     | all workflow threads have been joined
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,416 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,416 | INFO     | traces error code: 0
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,538 [wrapper] ==== pilot stdout END ====
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,543 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,548 [wrapper] pilotpid: 5976
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,553 [wrapper] Pilot exit status: 0
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,604 [wrapper] pandaids: 6742554675
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,643 [wrapper] cleanup supervisor_pilot  3274 5977
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,663 [wrapper] Test setup, not cleaning
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,668 [wrapper] apfmon messages muted
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,686 [wrapper] ==== wrapper stdout END ====
2025-07-26 21:30:34 (9832): Guest Log: 2025-07-27 01:30:33,692 [wrapper] ==== wrapper stderr END ====
2025-07-26 21:30:34 (9832): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 21:30:34 (9832): Guest Log:     "exeErrorCode": 0,
2025-07-26 21:30:34 (9832): Guest Log:     "exeErrorDiag": "",
2025-07-26 21:30:34 (9832): Guest Log:     "pilotErrorCode": 0,
2025-07-26 21:30:34 (9832): Guest Log:     "pilotErrorDiag": "",
2025-07-26 21:30:34 (9832): Guest Log:  *** Listing of results directory ***
2025-07-26 21:30:34 (9832): Guest Log: total 308536
2025-07-26 21:30:34 (9832): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 22 18:15 pilot3.tar.gz
2025-07-26 21:30:34 (9832): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 22 18:25 queuedata.json
2025-07-26 21:30:34 (9832): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 22 18:29 runpilot2-wrapper.sh
2025-07-26 21:30:34 (9832): Guest Log: -rwxr-xr-x. 1 atlas atlas     10797 Jul 26 17:28 init_data.xml
2025-07-26 21:30:34 (9832): Guest Log: -rwxr-xr-x. 1 atlas atlas    542902 Jul 26 17:28 input.tar.gz
2025-07-26 21:30:34 (9832): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 17:28 start_atlas.sh
2025-07-26 21:30:34 (9832): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 17:28 EVNT.45697539._000084.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 21:30:34 (9832): Guest Log: -rw-r--r--. 1 atlas atlas      2593 Jul 26 17:28 pandaJob.out
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 26 17:28 agis_schedconf.cvmfs.json
2025-07-26 21:30:34 (9832): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 17:28 pilot3
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas 306796635 Jul 27 01:29 HITS.45697541._002921.pool.root.1
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 01:29 pilot_heartbeat.json
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas      1034 Jul 27 01:29 memory_monitor_summary.json
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 01:29 agis_ddmendpoints.agis.ALL.json
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas    475964 Jul 27 01:29 log.45697541._002921.job.log.tgz.1
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas      7832 Jul 27 01:30 heartbeat.json
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas      4612 Jul 27 01:30 pilotlog.txt
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas   2187739 Jul 27 01:30 log.45697541._002921.job.log.1
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 01:30 output.list
2025-07-26 21:30:34 (9832): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 01:30 runtime_log
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas   2682880 Jul 27 01:30 result.tar.gz
2025-07-26 21:30:34 (9832): Guest Log: -rw-r--r--. 1 atlas atlas      8603 Jul 27 01:30 runtime_log.err
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas       662 Jul 27 01:30 PsVMDm4uWy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgyJLDmsxGjZn.diag
2025-07-26 21:30:34 (9832): Guest Log: Looking for outputfile HITS.45697541._002921.pool.root.1
2025-07-26 21:30:34 (9832): Guest Log: HITS file was successfully produced
2025-07-26 21:30:34 (9832): Guest Log: -rw-------. 1 atlas atlas 306796635 Jul 27 01:29 /home/atlas/RunAtlas/HITS.45697541._002921.pool.root.1
2025-07-26 21:30:36 (9832): Guest Log: Successfully finished the ATLAS job!
2025-07-26 21:30:36 (9832): Guest Log: Copying the results back to the shared directory!
2025-07-26 21:30:36 (9832): Guest Log:  *** Contents of shared directory: ***
2025-07-26 21:30:36 (9832): Guest Log: total 638488
2025-07-26 21:30:36 (9832): Guest Log: -rwxrwxrwx. 1 root root 343755932 Jul 26 17:27 ATLAS.root_0
2025-07-26 21:30:36 (9832): Guest Log: -rwxrwxrwx. 1 root root 306796635 Jul 27 01:30 HITS.pool.root.1
2025-07-26 21:30:36 (9832): Guest Log: -rwxrwxrwx. 1 root root     10797 Jul 26 17:27 init_data.xml
2025-07-26 21:30:36 (9832): Guest Log: -rwxrwxrwx. 1 root root    542902 Jul 23 01:59 input.tar.gz
2025-07-26 21:30:36 (9832): Guest Log: -rwxrwxrwx. 1 root root   2682880 Jul 27 01:30 result.tar.gz
2025-07-26 21:30:36 (9832): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 23 01:59 start_atlas.sh
2025-07-26 21:30:36 (9832): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 21:30:36 (9832): VM Completion File Detected.
2025-07-26 21:30:36 (9832): Powering off VM.
2025-07-26 21:30:37 (9832): Successfully stopped VM.
2025-07-26 21:30:37 (9832): Deregistering VM. (boinc_96bcf23f835d471b, slot#7)
2025-07-26 21:30:37 (9832): Removing network bandwidth throttle group from VM.
2025-07-26 21:30:37 (9832): Removing VM from VirtualBox.
21:30:43 (9832): called boinc_finish(0)

</stderr_txt>
]]>

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