Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:54:23 (718061): wrapper (7.7.26015): starting
21:54:23 (718061): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 21:54:23] Arguments: --nthreads 8
[2025-07-22 21:54:23] Threads: 8
[2025-07-22 21:54:23] Checking for CVMFS
[2025-07-22 21:54:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 21:54:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 21:54:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 21:54:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 21:54:24] 2.13.1.0 3153527 1978 84900 148640 3 188 40810242 40960000 13696 16776704 0 25454700 99.999 69739 46867 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 21:54:24] CVMFS is ok
[2025-07-22 21:54:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 21:54:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 21:54:24] Further information can be found at the LHC@home message board.
[2025-07-22 21:54:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 21:54:24] Checking for apptainer binary...
[2025-07-22 21:54:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 21:54:24] Running /usr/bin/apptainer --version
[2025-07-22 21:54:24] apptainer version 1.4.1-1.el9
[2025-07-22 21:54:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 21:54:24] c-208-37.aglt2.org
[2025-07-22 21:54:24] apptainer works
[2025-07-22 21:54:24] Set ATHENA_PROC_NUMBER=8
[2025-07-22 21:54:24] Set ATHENA_CORE_NUMBER=8
[2025-07-22 21:54:24] Starting ATLAS job with PandaID=6742553510
[2025-07-22 21:54:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 23:13:44]  *** The last 200 lines of the pilot log: ***
[2025-07-22 23:13:44]  lfn=log.45697541._002567.job.log.tgz.1
[2025-07-22 23:13:44]  mtime=0
[2025-07-22 23:13:44]  protocol_id=None
[2025-07-22 23:13:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-22 23:13:44]  replicas=None
[2025-07-22 23:13:44]  scope=mc23_13p6TeV
[2025-07-22 23:13:44]  status=None
[2025-07-22 23:13:44]  status_code=0
[2025-07-22 23:13:44]  storage_token=
[2025-07-22 23:13:44]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6742553510/log.45697541._002567.job.log.tgz.1
[2025-07-22 23:13:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/4f/log.45697541._002567.job.log.tgz.1
[2025-07-22 23:13:44]  workdir=None
[2025-07-22 23:13:44] ]
[2025-07-22 23:13:44] 2025-07-23 03:13:05,590 | INFO     | transferring file log.45697541._002567.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6742553510/log.45697541._002567.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-22 23:13:44] 2025-07-23 03:13:05,590 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6742553510/log.45697541._002567.job.log.tgz.1 /tmp/boinchome/slots/5/log.45697541._002567.job
[2025-07-22 23:13:44] 2025-07-23 03:13:05,609 | INFO     | adding to output.list: log.45697541._002567.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/4f/log.45697541._002567.job.log.tg
[2025-07-22 23:13:44] 2025-07-23 03:13:05,610 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 23:13:44] 2025-07-23 03:13:05,610 | INFO     | summary of transferred files:
[2025-07-22 23:13:44] 2025-07-23 03:13:05,610 | INFO     |  -- lfn=log.45697541._002567.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 23:13:44] 2025-07-23 03:13:05,610 | INFO     | stage-out finished correctly
[2025-07-22 23:13:44] 2025-07-23 03:13:05,712 | INFO     | PID=721758 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 23:13:44] 2025-07-23 03:13:05,712 | INFO     | .. there are 16 such processes running
[2025-07-22 23:13:44] 2025-07-23 03:13:07,323 | INFO     | monitor loop #342: job 0:6742553510 is in state 'finished'
[2025-07-22 23:13:44] 2025-07-23 03:13:07,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 23:13:44] 2025-07-23 03:13:08,493 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 23:13:44] 2025-07-23 03:13:08,564 | INFO     | job 6742553510 has state=finished
[2025-07-22 23:13:44] 2025-07-23 03:13:08,564 | INFO     | preparing for final server update for job 6742553510 in state='finished'
[2025-07-22 23:13:44] 2025-07-23 03:13:08,565 | INFO     | this job has now completed (state=finished)
[2025-07-22 23:13:44] 2025-07-23 03:13:08,565 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 23:13:44] 2025-07-23 03:13:08,565 | INFO     | log transfer has been attempted: DONE
[2025-07-22 23:13:44] 2025-07-23 03:13:08,565 | INFO     | job 6742553510 has finished - writing final server update
[2025-07-22 23:13:44] 2025-07-23 03:13:08,565 | INFO     | total number of processed events: 400 (read)
[2025-07-22 23:13:44] 2025-07-23 03:13:08,565 | INFO     | executing command: lscpu
[2025-07-22 23:13:44] 2025-07-23 03:13:08,620 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 23:13:44] 2025-07-23 03:13:09,825 | INFO     | monitor loop #343: job 0:6742553510 is in state 'finished'
[2025-07-22 23:13:44] 2025-07-23 03:13:09,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,112 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-22 23:13:44] 2025-07-23 03:13:12,117 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3782.836156249999
[2025-07-22 23:13:44] 2025-07-23 03:13:12,131 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6742553510/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,131 | INFO     | extracted standard info from prmon json
[2025-07-22 23:13:44] 2025-07-23 03:13:12,131 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 23:13:44] 2025-07-23 03:13:12,131 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 23:13:44] 2025-07-23 03:13:12,132 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 23:13:44] 2025-07-23 03:13:12,132 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | fitting pss+swap vs Time
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | sum of square deviations: 106336877.5
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | sum of deviations: 76175244.5
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | mean x: 1753238107.5
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | mean y: 2578770.6142857145
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | -- intersect: -1253366905.4803483
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | intersect: -1253366905.4803483
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | chi2: 0.0014239212689826676
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | -- intersect: -1253366905.4803483
[2025-07-22 23:13:44] 2025-07-23 03:13:12,133 | INFO     | current memory leak: 0.72 B/s (using 70 data points, chi2=0.00)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | could have reported an average CPU frequency of 3776 MHz (6 samples)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | ..............................
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . Timing measurements:
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . get job = 0 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . initial setup = 2 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . payload setup = 5 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . stage-in = 0 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . payload execution = 4687 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . stage-out = 0 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | . log creation = 0 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,134 | INFO     | ..............................
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | 
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | job summary report
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | --------------------------------------------------
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | PanDA job id: 6742553510
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | task id: 45697541
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | errors: (none)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | pilot state: finished 
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | transexitcode: 0
[2025-07-22 23:13:44] 2025-07-23 03:13:12,191 | INFO     | exeerrorcode: 0
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | exeerrordiag: 
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | exitcode: 0
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | exitmsg: OK
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | cpuconsumptiontime: 35121 s
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | nevents: 400
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | neventsw: 0
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | pid: 728267
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | pgrp: 728267
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | corecount: 8
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | event service: False
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | sizes: {0: 2397333, 1: 2397532, 5: 2397794, 11: 2397850, 4696: 2424156, 4698: 2433154, 4701: 2433338, 4704: 2433532}
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | --------------------------------------------------
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | 
[2025-07-22 23:13:44] 2025-07-23 03:13:12,192 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | job 6742553510 has completed (purged errors)
[2025-07-22 23:13:44] 2025-07-23 03:13:12,211 | INFO     | overall cleanup function is called
[2025-07-22 23:13:44] 2025-07-23 03:13:13,218 | INFO     | --- collectZombieJob: --- 10, [728267]
[2025-07-22 23:13:44] 2025-07-23 03:13:13,218 | INFO     | zombie collector waiting for pid 728267
[2025-07-22 23:13:44] 2025-07-23 03:13:13,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 23:13:44] 2025-07-23 03:13:13,218 | INFO     | collected zombie processes
[2025-07-22 23:13:44] 2025-07-23 03:13:13,218 | INFO     | will attempt to kill all subprocesses of pid=728267
[2025-07-22 23:13:44] 2025-07-23 03:13:13,563 | INFO     | process IDs to be killed: [728267] (in reverse order)
[2025-07-22 23:13:44] 2025-07-23 03:13:13,676 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 23:13:44] 2025-07-23 03:13:13,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 23:13:44] 2025-07-23 03:13:13,691 | INFO     | did not find any defunct processes belonging to 728267
[2025-07-22 23:13:44] 2025-07-23 03:13:13,702 | INFO     | did not find any defunct processes belonging to 728267
[2025-07-22 23:13:44] 2025-07-23 03:13:13,703 | INFO     | ready for new job
[2025-07-22 23:13:44] 2025-07-23 03:13:13,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 23:13:44] 2025-07-23 03:13:13,704 | INFO     | ***************************************
[2025-07-22 23:13:44] 2025-07-23 03:13:13,704 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 23:13:44] 2025-07-23 03:13:13,704 | INFO     | ***************************************
[2025-07-22 23:13:44] 2025-07-23 03:13:13,704 | INFO     | 
[2025-07-22 23:13:44] 2025-07-23 03:13:13,708 | INFO     | architecture information:
[2025-07-22 23:13:44] 2025-07-23 03:13:13,709 | INFO     | executing command: cat /etc/os-release
[2025-07-22 23:13:44] 2025-07-23 03:13:13,726 | INFO     | cat /etc/os-release:
[2025-07-22 23:13:44] NAME="CentOS Linux"
[2025-07-22 23:13:44] VERSION="7 (Core)"
[2025-07-22 23:13:44] ID="centos"
[2025-07-22 23:13:44] ID_LIKE="rhel fedora"
[2025-07-22 23:13:44] VERSION_ID="7"
[2025-07-22 23:13:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 23:13:44] ANSI_COLOR="0;31"
[2025-07-22 23:13:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 23:13:44] HOME_URL="https://www.centos.org/"
[2025-07-22 23:13:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 23:13:44] 
[2025-07-22 23:13:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 23:13:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 23:13:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 23:13:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 23:13:44] 
[2025-07-22 23:13:44] 2025-07-23 03:13:13,727 | INFO     | ***************************************
[2025-07-22 23:13:44] 2025-07-23 03:13:14,230 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-22 23:13:44] 2025-07-23 03:13:14,247 | INFO     | sufficient remaining disk space (160094486528 B)
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | INFO     | update_server=False
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | INFO     | aborting loop
[2025-07-22 23:13:44] 2025-07-23 03:13:14,248 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 23:13:44] 2025-07-23 03:13:14,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 23:13:44] 2025-07-23 03:13:14,937 | INFO     | all payload control threads have been joined
[2025-07-22 23:13:44] 2025-07-23 03:13:14,984 | INFO     | all data control threads have been joined
[2025-07-22 23:13:44] 2025-07-23 03:13:15,139 | INFO     | all job control threads have been joined
[2025-07-22 23:13:44] 2025-07-23 03:13:15,248 | INFO     | [job] retrieve thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,253 | INFO     | [job] job monitor thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,355 | INFO     | [data] copytool_in thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,362 | INFO     | [job] validate thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,423 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,452 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,633 | INFO     | [payload] failed_post thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,752 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,938 | INFO     | [payload] control thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:15,990 | INFO     | [data] control thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:16,140 | INFO     | [job] control thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:16,253 | INFO     | [data] copytool_out thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:16,507 | INFO     | [payload] validate_post thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:17,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 23:13:44] 2025-07-23 03:13:18,205 | INFO     | [job] queue monitor thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:18,555 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:24,462 | INFO     | job.realtimelogging is not enabled
[2025-07-22 23:13:44] 2025-07-23 03:13:25,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 23:13:44] 2025-07-23 03:13:27,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360302962496)>', '<ExcThread(monitor, started 140359959029504)>']
[2025-07-22 23:13:44] 2025-07-23 03:13:32,374 | INFO     | all workflow threads have been joined
[2025-07-22 23:13:44] 2025-07-23 03:13:32,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 23:13:44] 2025-07-23 03:13:32,374 | INFO     | traces error code: 0
[2025-07-22 23:13:44] 2025-07-23 03:13:32,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 23:13:44] 2025-07-23 03:13:44,218 | INFO     | PID=721758 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-22 23:13:44] 2025-07-23 03:13:44,219 | INFO     | .. there are 16 such processes running
[2025-07-22 23:13:44] 2025-07-23 03:13:44,219 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 23:13:44] 2025-07-23 03:13:44,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 23:13:44] 2025-07-23 03:13:44,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 23:13:44] 2025-07-23 03:13:44,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 23:13:44] 2025-07-23 03:13:44,219 | INFO     | [monitor] control thread has ended
[2025-07-22 23:13:44] 2025-07-23 03:13:44,305 [wrapper] ==== pilot stdout END ====
[2025-07-22 23:13:44] 2025-07-23 03:13:44,309 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 23:13:44] 2025-07-23 03:13:44,312 [wrapper] pilotpid: 721758
[2025-07-22 23:13:44] 2025-07-23 03:13:44,315 [wrapper] Pilot exit status: 0
[2025-07-22 23:13:44] 2025-07-23 03:13:44,326 [wrapper] pandaids: 6742553510
[2025-07-22 23:13:44] 2025-07-23 03:13:44,408 [wrapper] cleanup supervisor_pilot 1100953 721759
[2025-07-22 23:13:44] 2025-07-23 03:13:44,411 [wrapper] Test setup, not cleaning
[2025-07-22 23:13:44] 2025-07-23 03:13:44,414 [wrapper] apfmon messages muted
[2025-07-22 23:13:44] 2025-07-23 03:13:44,417 [wrapper] ==== wrapper stdout END ====
[2025-07-22 23:13:44] 2025-07-23 03:13:44,419 [wrapper] ==== wrapper stderr END ====
[2025-07-22 23:13:44]  *** Error codes and diagnostics ***
[2025-07-22 23:13:44]     "exeErrorCode": 0,
[2025-07-22 23:13:44]     "exeErrorDiag": "",
[2025-07-22 23:13:44]     "pilotErrorCode": 0,
[2025-07-22 23:13:44]     "pilotErrorDiag": "",
[2025-07-22 23:13:44]  *** Listing of results directory ***
[2025-07-22 23:13:44] total 638096
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 13:14 pilot3.tar.gz
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 14:07 queuedata.json
[2025-07-22 23:13:44] -rwx------. 1 boincer umatlas     36292 Jul 22 14:07 runpilot2-wrapper.sh
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas       100 Jul 22 21:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 23:13:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 21:54 run_atlas
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas       105 Jul 22 21:54 job.xml
[2025-07-22 23:13:44] -rw-r--r--. 2 boincer umatlas 344241453 Jul 22 21:54 EVNT.45697539._000070.pool.root.1
[2025-07-22 23:13:44] -rw-r--r--. 2 boincer umatlas    542904 Jul 22 21:54 input.tar.gz
[2025-07-22 23:13:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 21:54 start_atlas.sh
[2025-07-22 23:13:44] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 21:54 shared
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas         0 Jul 22 21:54 boinc_lockfile
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas      2592 Jul 22 21:54 pandaJob.out
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas    977736 Jul 22 21:54 agis_schedconf.cvmfs.json
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas   1593031 Jul 22 21:54 agis_ddmendpoints.agis.ALL.json
[2025-07-22 23:13:44] drwx------. 4 boincer umatlas      4096 Jul 22 21:54 pilot3
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas 303777338 Jul 22 23:12 HITS.45697541._002567.pool.root.1
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas       529 Jul 22 23:12 boinc_task_state.xml
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas      7171 Jul 22 23:12 init_data.xml
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas      1029 Jul 22 23:13 memory_monitor_summary.json
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas    296001 Jul 22 23:13 log.45697541._002567.job.log.tgz.1
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas        95 Jul 22 23:13 pilot_heartbeat.json
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas      7756 Jul 22 23:13 heartbeat.json
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 23:13 boinc_mmap_file
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas        27 Jul 22 23:13 wrapper_checkpoint.txt
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas       822 Jul 22 23:13 pilotlog.txt
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas    461518 Jul 22 23:13 log.45697541._002567.job.log.1
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas       357 Jul 22 23:13 output.list
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas       620 Jul 22 23:13 runtime_log
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas    778240 Jul 22 23:13 result.tar.gz
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas      8660 Jul 22 23:13 runtime_log.err
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas       652 Jul 22 23:13 l8MNDmhZWy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLvJLDmIffadn.diag
[2025-07-22 23:13:44] -rw-r--r--. 1 boincer umatlas     21717 Jul 22 23:13 stderr.txt
[2025-07-22 23:13:44] HITS file was successfully produced:
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas 303777338 Jul 22 23:12 shared/HITS.pool.root.1
[2025-07-22 23:13:44]  *** Contents of shared directory: ***
[2025-07-22 23:13:44] total 634152
[2025-07-22 23:13:44] -rw-r--r--. 2 boincer umatlas 344241453 Jul 22 21:54 ATLAS.root_0
[2025-07-22 23:13:44] -rw-r--r--. 2 boincer umatlas    542904 Jul 22 21:54 input.tar.gz
[2025-07-22 23:13:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 21:54 start_atlas.sh
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas 303777338 Jul 22 23:12 HITS.pool.root.1
[2025-07-22 23:13:44] -rw-------. 1 boincer umatlas    778240 Jul 22 23:13 result.tar.gz
23:13:45 (718061): run_atlas exited; CPU time 35224.516755
23:13:45 (718061): called boinc_finish(0)

</stderr_txt>
]]>

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