Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
02:39:53 (330634): wrapper (7.7.26015): starting
02:39:53 (330634): wrapper: running run_atlas (--nthreads 4)
[2025-07-23 02:39:53] Arguments: --nthreads 4
[2025-07-23 02:39:53] Threads: 4
[2025-07-23 02:39:53] Checking for CVMFS
[2025-07-23 02:39:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 02:39:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 02:39:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 02:39:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 02:39:54] 2.13.1.0 79548 767 53000 148640 2 56 2407221 6144001 0 130560 0 253913 99.968 30555 914 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-23 02:39:54] CVMFS is ok
[2025-07-23 02:39:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 02:39:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-23 02:39:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-23 02:39:54] Further information can be found at the LHC@home message board.
[2025-07-23 02:39:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 02:39:54] Checking for apptainer binary...
[2025-07-23 02:39:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 02:39:54] Running /usr/bin/apptainer --version
[2025-07-23 02:39:54] apptainer version 1.4.1
[2025-07-23 02:39:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 02:39:54] archlinux
[2025-07-23 02:39:54] apptainer works
[2025-07-23 02:39:54] Set ATHENA_PROC_NUMBER=4
[2025-07-23 02:39:54] Set ATHENA_CORE_NUMBER=4
[2025-07-23 02:39:54] Starting ATLAS job with PandaID=6742553901
[2025-07-23 02:39:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 09:07:09]  *** The last 200 lines of the pilot log: ***
[2025-07-23 09:07:09] 2025-07-23 08:06:33,982 | INFO     | executing command: lscpu
[2025-07-23 09:07:09] 2025-07-23 08:06:33,996 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 09:07:09] 2025-07-23 08:06:35,616 | INFO     | monitor loop #1725: job 0:6742553901 is in state 'finished'
[2025-07-23 09:07:09] 2025-07-23 08:06:35,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,139 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-23 09:07:09] 2025-07-23 08:06:37,140 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 2353.377
[2025-07-23 09:07:09] 2025-07-23 08:06:37,141 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6742553901/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,141 | INFO     | extracted standard info from prmon json
[2025-07-23 09:07:09] 2025-07-23 08:06:37,141 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 09:07:09] 2025-07-23 08:06:37,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 09:07:09] 2025-07-23 08:06:37,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 09:07:09] 2025-07-23 08:06:37,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 09:07:09] 2025-07-23 08:06:37,146 | INFO     | fitting pss+swap vs Time
[2025-07-23 09:07:09] 2025-07-23 08:06:37,146 | INFO     | sum of square deviations: 17014774835.0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,148 | INFO     | sum of deviations: 37999293090.99998
[2025-07-23 09:07:09] 2025-07-23 08:06:37,149 | INFO     | mean x: 1753246401.5
[2025-07-23 09:07:09] 2025-07-23 08:06:37,149 | INFO     | mean y: 2443512.831578947
[2025-07-23 09:07:09] 2025-07-23 08:06:37,149 | INFO     | -- intersect: -3913101918.5599337
[2025-07-23 09:07:09] 2025-07-23 08:06:37,149 | INFO     | intersect: -3913101918.5599337
[2025-07-23 09:07:09] 2025-07-23 08:06:37,149 | INFO     | chi2: 3.03653120948481
[2025-07-23 09:07:09] 2025-07-23 08:06:37,149 | INFO     | sum of square deviations: 16351934500.0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | sum of deviations: 60516495760.99996
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | mean x: 1753246249.0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | mean y: 2448637.2933333335
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | -- intersect: -6486099809.105935
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | intersect: -6486099809.105935
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | chi2: 2.382346569474604
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | current chi2=2.382346569474604 (change=21.5438141378826 %)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,152 | INFO     | right removable region: 374
[2025-07-23 09:07:09] 2025-07-23 08:06:37,153 | INFO     | sum of square deviations: 16351934500.0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,155 | INFO     | sum of deviations: -45439925714.99999
[2025-07-23 09:07:09] 2025-07-23 08:06:37,155 | INFO     | mean x: 1753246554.0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,155 | INFO     | mean y: 2462675.3226666665
[2025-07-23 09:07:09] 2025-07-23 08:06:37,155 | INFO     | -- intersect: 4874509659.9678
[2025-07-23 09:07:09] 2025-07-23 08:06:37,155 | INFO     | intersect: 4874509659.9678
[2025-07-23 09:07:09] 2025-07-23 08:06:37,156 | INFO     | chi2: 1.0281052883462318
[2025-07-23 09:07:09] 2025-07-23 08:06:37,156 | INFO     | current chi2=1.0281052883462318 (change=66.142113569099 %)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,156 | INFO     | sum of square deviations: 15706536352.5
[2025-07-23 09:07:09] 2025-07-23 08:06:37,158 | INFO     | sum of deviations: -54429816208.999985
[2025-07-23 09:07:09] 2025-07-23 08:06:37,158 | INFO     | mean x: 1753246706.5
[2025-07-23 09:07:09] 2025-07-23 08:06:37,158 | INFO     | mean y: 2464761.3405405404
[2025-07-23 09:07:09] 2025-07-23 08:06:37,158 | INFO     | -- intersect: 6078208888.63441
[2025-07-23 09:07:09] 2025-07-23 08:06:37,158 | INFO     | intersect: 6078208888.63441
[2025-07-23 09:07:09] 2025-07-23 08:06:37,159 | INFO     | chi2: 0.8402236470138239
[2025-07-23 09:07:09] 2025-07-23 08:06:37,159 | INFO     | current chi2=0.8402236470138239 (change=18.27455256403035 %)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,159 | INFO     | left removable region: 20
[2025-07-23 09:07:09] 2025-07-23 08:06:37,159 | INFO     | sum of square deviations: 13755764892.5
[2025-07-23 09:07:09] 2025-07-23 08:06:37,161 | INFO     | sum of deviations: -331226919.49999887
[2025-07-23 09:07:09] 2025-07-23 08:06:37,161 | INFO     | mean x: 1753246828.5
[2025-07-23 09:07:09] 2025-07-23 08:06:37,161 | INFO     | mean y: 2462502.4604519773
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | -- intersect: 44679169.48445897
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | intersect: 44679169.48445897
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | chi2: 0.05226317656168822
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | -- intersect: 44679169.48445897
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | current memory leak: -0.02 B/s (using 354 data points, chi2=0.05)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | could have reported an average CPU frequency of 2303 MHz (16 samples)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | ..............................
[2025-07-23 09:07:09] 2025-07-23 08:06:37,162 | INFO     | . Timing measurements:
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . get job = 0 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . initial setup = 12 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . payload setup = 7 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . stage-in = 2 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . payload execution = 23147 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . stage-out = 1 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | . log creation = 0 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,163 | INFO     | ..............................
[2025-07-23 09:07:09] 2025-07-23 08:06:37,219 | INFO     | 
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | job summary report
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | --------------------------------------------------
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | PanDA job id: 6742553901
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | task id: 45697541
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | errors: (none)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | pilot state: finished 
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | transexitcode: 0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | exeerrorcode: 0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | exeerrordiag: 
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | exitcode: 0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | exitmsg: OK
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | cpuconsumptiontime: 87045 s
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | nevents: 400
[2025-07-23 09:07:09] 2025-07-23 08:06:37,220 | INFO     | neventsw: 0
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | pid: 340793
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | pgrp: 340793
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | corecount: 4
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | event service: False
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | sizes: {0: 2397506, 5: 2397768, 11: 2397824, 23158: 2432743, 23159: 2441741, 23162: 2441797, 23167: 2442119}
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | --------------------------------------------------
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | 
[2025-07-23 09:07:09] 2025-07-23 08:06:37,221 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,232 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | job 6742553901 has completed (purged errors)
[2025-07-23 09:07:09] 2025-07-23 08:06:37,233 | INFO     | overall cleanup function is called
[2025-07-23 09:07:09] 2025-07-23 08:06:38,240 | INFO     | --- collectZombieJob: --- 10, [340793]
[2025-07-23 09:07:09] 2025-07-23 08:06:38,240 | INFO     | zombie collector waiting for pid 340793
[2025-07-23 09:07:09] 2025-07-23 08:06:38,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 09:07:09] 2025-07-23 08:06:38,240 | INFO     | collected zombie processes
[2025-07-23 09:07:09] 2025-07-23 08:06:38,240 | INFO     | will attempt to kill all subprocesses of pid=340793
[2025-07-23 09:07:09] 2025-07-23 08:06:38,294 | INFO     | process IDs to be killed: [340793] (in reverse order)
[2025-07-23 09:07:09] 2025-07-23 08:06:38,320 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 09:07:09] 2025-07-23 08:06:38,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 09:07:09] 2025-07-23 08:06:38,322 | INFO     | did not find any defunct processes belonging to 340793
[2025-07-23 09:07:09] 2025-07-23 08:06:38,323 | INFO     | did not find any defunct processes belonging to 340793
[2025-07-23 09:07:09] 2025-07-23 08:06:38,324 | INFO     | ready for new job
[2025-07-23 09:07:09] 2025-07-23 08:06:38,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 09:07:09] 2025-07-23 08:06:38,325 | INFO     | ***************************************
[2025-07-23 09:07:09] 2025-07-23 08:06:38,325 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 09:07:09] 2025-07-23 08:06:38,325 | INFO     | ***************************************
[2025-07-23 09:07:09] 2025-07-23 08:06:38,325 | INFO     | 
[2025-07-23 09:07:09] 2025-07-23 08:06:38,325 | INFO     | architecture information:
[2025-07-23 09:07:09] 2025-07-23 08:06:38,326 | INFO     | executing command: cat /etc/os-release
[2025-07-23 09:07:09] 2025-07-23 08:06:38,334 | INFO     | cat /etc/os-release:
[2025-07-23 09:07:09] NAME="CentOS Linux"
[2025-07-23 09:07:09] VERSION="7 (Core)"
[2025-07-23 09:07:09] ID="centos"
[2025-07-23 09:07:09] ID_LIKE="rhel fedora"
[2025-07-23 09:07:09] VERSION_ID="7"
[2025-07-23 09:07:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 09:07:09] ANSI_COLOR="0;31"
[2025-07-23 09:07:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 09:07:09] HOME_URL="https://www.centos.org/"
[2025-07-23 09:07:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 09:07:09] 
[2025-07-23 09:07:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 09:07:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 09:07:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 09:07:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 09:07:09] 
[2025-07-23 09:07:09] 2025-07-23 08:06:38,334 | INFO     | ***************************************
[2025-07-23 09:07:09] 2025-07-23 08:06:38,837 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-23 09:07:09] 2025-07-23 08:06:38,849 | INFO     | sufficient remaining disk space (22649241600 B)
[2025-07-23 09:07:09] 2025-07-23 08:06:38,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 09:07:09] 2025-07-23 08:06:38,849 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 09:07:09] 2025-07-23 08:06:38,849 | INFO     | update_server=False
[2025-07-23 09:07:09] 2025-07-23 08:06:38,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 09:07:09] 2025-07-23 08:06:38,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 09:07:09] 2025-07-23 08:06:38,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 09:07:09] 2025-07-23 08:06:39,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 09:07:09] 2025-07-23 08:06:39,122 | INFO     | aborting loop
[2025-07-23 09:07:09] 2025-07-23 08:06:39,741 | INFO     | all data control threads have been joined
[2025-07-23 09:07:09] 2025-07-23 08:06:39,820 | INFO     | all job control threads have been joined
[2025-07-23 09:07:09] 2025-07-23 08:06:39,855 | INFO     | [job] retrieve thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:39,856 | INFO     | [job] queue monitor thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:39,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 09:07:09] 2025-07-23 08:06:39,986 | INFO     | [payload] validate_post thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:40,128 | INFO     | [job] job monitor thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:40,276 | INFO     | all payload control threads have been joined
[2025-07-23 09:07:09] 2025-07-23 08:06:40,685 | INFO     | [payload] failed_post thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:40,738 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:40,747 | INFO     | [data] control thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:40,825 | INFO     | [job] control thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:40,916 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:41,055 | INFO     | [job] validate thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:41,163 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:41,208 | INFO     | [data] copytool_in thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:41,282 | INFO     | [payload] control thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:41,894 | INFO     | [data] copytool_out thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:42,856 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:49,117 | INFO     | job.realtimelogging is not enabled
[2025-07-23 09:07:09] 2025-07-23 08:06:50,123 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 09:07:09] 2025-07-23 08:06:51,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684651988800)>', '<ExcThread(monitor, started 140684287776512)>']
[2025-07-23 09:07:09] 2025-07-23 08:06:56,978 | INFO     | all workflow threads have been joined
[2025-07-23 09:07:09] 2025-07-23 08:06:56,979 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 09:07:09] 2025-07-23 08:06:56,979 | INFO     | traces error code: 0
[2025-07-23 09:07:09] 2025-07-23 08:06:56,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 09:07:09] 2025-07-23 08:07:09,491 | INFO     | PID=334253 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 09:07:09] 2025-07-23 08:07:09,492 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 09:07:09] 2025-07-23 08:07:09,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 09:07:09] 2025-07-23 08:07:09,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 09:07:09] 2025-07-23 08:07:09,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 09:07:09] 2025-07-23 08:07:09,492 | INFO     | [monitor] control thread has ended
[2025-07-23 09:07:09] 2025-07-23 08:07:09,574 [wrapper] ==== pilot stdout END ====
[2025-07-23 09:07:09] 2025-07-23 08:07:09,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 09:07:09] 2025-07-23 08:07:09,577 [wrapper] pilotpid: 334253
[2025-07-23 09:07:09] 2025-07-23 08:07:09,579 [wrapper] Pilot exit status: 0
[2025-07-23 09:07:09] 2025-07-23 08:07:09,586 [wrapper] pandaids: 6742553901
[2025-07-23 09:07:09] 2025-07-23 08:07:09,602 [wrapper] cleanup supervisor_pilot  448541 334254
[2025-07-23 09:07:09] 2025-07-23 08:07:09,604 [wrapper] Test setup, not cleaning
[2025-07-23 09:07:09] 2025-07-23 08:07:09,606 [wrapper] apfmon messages muted
[2025-07-23 09:07:09] 2025-07-23 08:07:09,608 [wrapper] ==== wrapper stdout END ====
[2025-07-23 09:07:09] 2025-07-23 08:07:09,610 [wrapper] ==== wrapper stderr END ====
[2025-07-23 09:07:09]  *** Error codes and diagnostics ***
[2025-07-23 09:07:09]     "exeErrorCode": 0,
[2025-07-23 09:07:09]     "exeErrorDiag": "",
[2025-07-23 09:07:09]     "pilotErrorCode": 0,
[2025-07-23 09:07:09]     "pilotErrorDiag": "",
[2025-07-23 09:07:09]  *** Listing of results directory ***
[2025-07-23 09:07:09] total 646552
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc    530466 Jul 22 18:14 pilot3.tar.gz
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc      5112 Jul 22 19:07 queuedata.json
[2025-07-23 09:07:09] -rwx------ 1 boinc boinc     36292 Jul 22 19:08 runpilot2-wrapper.sh
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc       100 Jul 23 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 09:07:09] -rwxr-xr-x 1 boinc boinc      7986 Jul 23 02:39 run_atlas
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc       105 Jul 23 02:39 job.xml
[2025-07-23 09:07:09] -rw-r--r-- 2 boinc boinc 343808875 Jul 23 02:39 EVNT.45697539._000072.pool.root.1
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc      6494 Jul 23 02:39 init_data.xml
[2025-07-23 09:07:09] drwxrwx--x 2 boinc boinc      4096 Jul 23 02:39 shared
[2025-07-23 09:07:09] -rw-r--r-- 2 boinc boinc    542909 Jul 23 02:39 input.tar.gz
[2025-07-23 09:07:09] -rw-r--r-- 2 boinc boinc     15095 Jul 23 02:39 start_atlas.sh
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc         0 Jul 23 02:39 boinc_lockfile
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc      2593 Jul 23 02:39 pandaJob.out
[2025-07-23 09:07:09] -rw------- 1 boinc boinc    977736 Jul 23 02:40 agis_schedconf.cvmfs.json
[2025-07-23 09:07:09] drwx------ 4 boinc boinc      4096 Jul 23 02:40 pilot3
[2025-07-23 09:07:09] -rw------- 1 boinc boinc 309392751 Jul 23 09:05 HITS.45697541._002632.pool.root.1
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc       531 Jul 23 09:05 boinc_task_state.xml
[2025-07-23 09:07:09] -rw------- 1 boinc boinc      1025 Jul 23 09:06 memory_monitor_summary.json
[2025-07-23 09:07:09] -rw------- 1 boinc boinc   1593041 Jul 23 09:06 agis_ddmendpoints.agis.ALL.json
[2025-07-23 09:07:09] -rw------- 1 boinc boinc    423924 Jul 23 09:06 log.45697541._002632.job.log.tgz.1
[2025-07-23 09:07:09] -rw------- 1 boinc boinc      7762 Jul 23 09:06 heartbeat.json
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc      8192 Jul 23 09:06 boinc_mmap_file
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc        28 Jul 23 09:06 wrapper_checkpoint.txt
[2025-07-23 09:07:09] -rw------- 1 boinc boinc       746 Jul 23 09:07 pilotlog.txt
[2025-07-23 09:07:09] -rw------- 1 boinc boinc        95 Jul 23 09:07 pilot_heartbeat.json
[2025-07-23 09:07:09] -rw------- 1 boinc boinc   2072080 Jul 23 09:07 log.45697541._002632.job.log.1
[2025-07-23 09:07:09] -rw------- 1 boinc boinc       357 Jul 23 09:07 output.list
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc       620 Jul 23 09:07 runtime_log
[2025-07-23 09:07:09] -rw------- 1 boinc boinc   2519040 Jul 23 09:07 result.tar.gz
[2025-07-23 09:07:09] -rw------- 1 boinc boinc       646 Jul 23 09:07 snuNDmWaWy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmgIvKDmJLafXn.diag
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc      8616 Jul 23 09:07 runtime_log.err
[2025-07-23 09:07:09] -rw-r--r-- 1 boinc boinc     21230 Jul 23 09:07 stderr.txt
[2025-07-23 09:07:09] HITS file was successfully produced:
[2025-07-23 09:07:09] -rw------- 1 boinc boinc 309392751 Jul 23 09:05 shared/HITS.pool.root.1
[2025-07-23 09:07:09]  *** Contents of shared directory: ***
[2025-07-23 09:07:09] total 640912
[2025-07-23 09:07:09] -rw-r--r-- 2 boinc boinc 343808875 Jul 23 02:39 ATLAS.root_0
[2025-07-23 09:07:09] -rw-r--r-- 2 boinc boinc    542909 Jul 23 02:39 input.tar.gz
[2025-07-23 09:07:09] -rw-r--r-- 2 boinc boinc     15095 Jul 23 02:39 start_atlas.sh
[2025-07-23 09:07:09] -rw------- 1 boinc boinc 309392751 Jul 23 09:05 HITS.pool.root.1
[2025-07-23 09:07:09] -rw------- 1 boinc boinc   2519040 Jul 23 09:07 result.tar.gz
09:07:11 (330634): run_atlas exited; CPU time 87244.267828
09:07:11 (330634): called boinc_finish(0)

</stderr_txt>
]]>

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