Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:57:22 (2662387): wrapper (7.7.26015): starting
17:57:22 (2662387): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 17:57:22] Arguments: --nthreads 12
[2025-07-22 17:57:22] Threads: 12
[2025-07-22 17:57:22] Checking for CVMFS
[2025-07-22 17:57:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 17:57:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 17:57:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 17:57:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 17:57:23] 2.11.5.0 10565 18912 217420 148639 1 337 45231260 45568000 10919 130560 0 131657473 99.750 98789920 21464 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-22 17:57:23] CVMFS is ok
[2025-07-22 17:57:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 17:57:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 17:57:23] Further information can be found at the LHC@home message board.
[2025-07-22 17:57:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 17:57:23] Checking for apptainer binary...
[2025-07-22 17:57:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 17:57:23] Running /usr/bin/apptainer --version
[2025-07-22 17:57:23] apptainer version 1.4.1-1.el9
[2025-07-22 17:57:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 17:57:23] wns0072.triumf.lcg
[2025-07-22 17:57:23] apptainer works
[2025-07-22 17:57:23] Set ATHENA_PROC_NUMBER=12
[2025-07-22 17:57:23] Set ATHENA_CORE_NUMBER=12
[2025-07-22 17:57:23] Starting ATLAS job with PandaID=6742556431
[2025-07-22 17:57:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 18:01:43]  *** The last 200 lines of the pilot log: ***
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 18:01:43] 2025-07-23 01:01:10,474 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 18:01:43] 2025-07-23 01:01:10,474 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | WARNING  | wrong length of table data, x=[1753232308.0], y=[1321.0] (must be same and length>=4)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | could have reported an average CPU frequency of 2503 MHz (4 samples)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | ..............................
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . Timing measurements:
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . get job = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . initial setup = 2 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . payload setup = 10 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . stage-in = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . payload execution = 29 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . stage-out = 1 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . log creation = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | ..............................
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 18:01:43] 2025-07-23 01:01:10,476 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742556431/pilotlog.txt
[2025-07-22 18:01:43] 2025-07-23 01:01:10,488 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 18:01:43] - Log from pilotlog.txt -
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742556431/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | extracted standard info from prmon json
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 18:01:43] 2025-07-23 01:01:10,474 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 18:01:43] 2025-07-23 01:01:10,474 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | WARNING  | wrong length of table data, x=[1753232308.0], y=[1321.0] (must be same and length>=4)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | could have reported an average CPU frequency of 2503 MHz (4 samples)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | ..............................
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . Timing measurements:
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . get job = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . initial setup = 2 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . payload setup = 10 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . stage-in = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . payload execution = 29 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . stage-out = 1 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . log creation = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | ..............................
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 18:01:43] 2025-07-23 01:01:10,476 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742556431/pilotlog.txt
[2025-07-22 18:01:43] 2025-07-23 01:01:10,488 | WARNING  | 
[2025-07-22 18:01:43] [begin log extracts]
[2025-07-22 18:01:43] - Log from pilotlog.txt -
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742556431/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | extracted standard info from prmon json
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 18:01:43] 2025-07-23 01:01:10,473 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 18:01:43] 2025-07-23 01:01:10,474 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 18:01:43] 2025-07-23 01:01:10,474 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | WARNING  | wrong length of table data, x=[1753232308.0], y=[1321.0] (must be same and length>=4)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | could have reported an average CPU frequency of 2503 MHz (4 samples)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | ..............................
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . Timing measurements:
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . get job = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . initial setup = 2 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . payload setup = 10 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . stage-in = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . payload execution = 29 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . stage-out = 1 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | . log creation = 0 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | ..............................
[2025-07-22 18:01:43] 2025-07-23 01:01:10,475 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 18:01:43] 2025-07-23 01:01:10,476 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742556431/pilotlog.txt
[2025-07-22 18:01:43] [end log extracts]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,488 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,489 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | 
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | job summary report
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | --------------------------------------------------
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | PanDA job id: 6742556431
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | task id: 45697541
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 17:58:42,758 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | pilot state: failed 
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | transexitcode: 65
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | exeerrorcode: 65
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | exitcode: 65
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | cpuconsumptiontime: 15 s
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | nevents: 0
[2025-07-22 18:01:43] 2025-07-23 01:01:10,552 | INFO     | neventsw: 0
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | pid: 2672263
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | pgrp: 2672263
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | corecount: 12
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | event service: False
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | sizes: {0: 2397504, 12: 2397794, 22: 2397794, 44: 2421030, 47: 2425322, 51: 2425438, 180: 2425732}
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | --------------------------------------------------
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | 
[2025-07-22 18:01:43] 2025-07-23 01:01:10,553 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 18:01:43] 2025-07-23 01:01:10,572 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,572 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,573 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 18:01:43] 2025-07-23 01:01:10,574 | INFO     | job 6742556431 has completed (purged errors)
[2025-07-22 18:01:43] 2025-07-23 01:01:10,574 | INFO     | overall cleanup function is called
[2025-07-22 18:01:43] 2025-07-23 01:01:11,581 | INFO     | --- collectZombieJob: --- 10, [2672263]
[2025-07-22 18:01:43] 2025-07-23 01:01:11,581 | INFO     | zombie collector waiting for pid 2672263
[2025-07-22 18:01:43] 2025-07-23 01:01:11,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 18:01:43] 2025-07-23 01:01:11,581 | INFO     | collected zombie processes
[2025-07-22 18:01:43] 2025-07-23 01:01:11,581 | INFO     | will attempt to kill all subprocesses of pid=2672263
[2025-07-22 18:01:43] 2025-07-23 01:01:12,297 | INFO     | process IDs to be killed: [2672263] (in reverse order)
[2025-07-22 18:01:43] 2025-07-23 01:01:12,368 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 18:01:43] 2025-07-23 01:01:12,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 18:01:43] 2025-07-23 01:01:12,401 | INFO     | did not find any defunct processes belonging to 2672263
[2025-07-22 18:01:43] 2025-07-23 01:01:12,447 | INFO     | did not find any defunct processes belonging to 2672263
[2025-07-22 18:01:43] 2025-07-23 01:01:12,447 | INFO     | ready for new job
[2025-07-22 18:01:43] 2025-07-23 01:01:12,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 18:01:43] 2025-07-23 01:01:12,449 | INFO     | ***************************************
[2025-07-22 18:01:43] 2025-07-23 01:01:12,449 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 18:01:43] 2025-07-23 01:01:12,449 | INFO     | ***************************************
[2025-07-22 18:01:43] 2025-07-23 01:01:12,450 | INFO     | 
[2025-07-22 18:01:43] 2025-07-23 01:01:12,458 | INFO     | architecture information:
[2025-07-22 18:01:43] 2025-07-23 01:01:12,474 | INFO     | executing command: cat /etc/os-release
[2025-07-22 18:01:43] 2025-07-23 01:01:12,579 | INFO     | cat /etc/os-release:
[2025-07-22 18:01:43] NAME="CentOS Linux"
[2025-07-22 18:01:43] VERSION="7 (Core)"
[2025-07-22 18:01:43] ID="centos"
[2025-07-22 18:01:43] ID_LIKE="rhel fedora"
[2025-07-22 18:01:43] VERSION_ID="7"
[2025-07-22 18:01:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 18:01:43] ANSI_COLOR="0;31"
[2025-07-22 18:01:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 18:01:43] HOME_URL="https://www.centos.org/"
[2025-07-22 18:01:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 18:01:43] 
[2025-07-22 18:01:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 18:01:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 18:01:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 18:01:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 18:01:43] 
[2025-07-22 18:01:43] 2025-07-23 01:01:12,579 | INFO     | ***************************************
[2025-07-22 18:01:43] 2025-07-23 01:01:13,082 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 18:01:43] 2025-07-23 01:01:13,117 | INFO     | sufficient remaining disk space (2113387102208 B)
[2025-07-22 18:01:43] 2025-07-23 01:01:13,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 18:01:43] 2025-07-23 01:01:13,118 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 18:01:43] 2025-07-23 01:01:13,118 | INFO     | update_server=False
[2025-07-22 18:01:43] 2025-07-23 01:01:13,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 18:01:43] 2025-07-23 01:01:13,224 | INFO     | all data control threads have been joined
[2025-07-22 18:01:43] 2025-07-23 01:01:13,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 18:01:43] 2025-07-23 01:01:13,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 18:01:43] 2025-07-23 01:01:13,634 | INFO     | all job control threads have been joined
[2025-07-22 18:01:43] 2025-07-23 01:01:13,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 18:01:43] 2025-07-23 01:01:13,697 | INFO     | aborting loop
[2025-07-22 18:01:43] 2025-07-23 01:01:14,041 | INFO     | all payload control threads have been joined
[2025-07-22 18:01:43] 2025-07-23 01:01:14,124 | INFO     | [job] retrieve thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,230 | INFO     | [data] control thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,295 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,312 | INFO     | [data] copytool_in thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,462 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,641 | INFO     | [job] control thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,703 | INFO     | [job] job monitor thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,959 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:14,963 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:15,030 | INFO     | [payload] validate_post thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:15,047 | INFO     | [payload] control thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:15,256 | INFO     | [data] copytool_out thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:15,456 | INFO     | [job] validate thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:15,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 18:01:43] 2025-07-23 01:01:15,584 | INFO     | [payload] failed_post thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:16,573 | INFO     | [job] queue monitor thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:17,354 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 18:01:43] 2025-07-23 01:01:18,252 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686413989696)>', '<ExcThread(monitor, started 140685210547968)>']
[2025-07-22 18:01:43] 2025-07-23 01:01:23,278 | INFO     | all workflow threads have been joined
[2025-07-22 18:01:43] 2025-07-23 01:01:23,278 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 18:01:43] 2025-07-23 01:01:23,278 | INFO     | traces error code: 0
[2025-07-22 18:01:43] 2025-07-23 01:01:23,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 18:01:43] 2025-07-23 01:01:43,567 | INFO     | PID=2665953 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 18:01:43] 2025-07-23 01:01:43,568 | INFO     | .. there are 20 such processes running
[2025-07-22 18:01:43] 2025-07-23 01:01:43,570 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 18:01:43] 2025-07-23 01:01:43,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 18:01:43] 2025-07-23 01:01:43,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 18:01:43] 2025-07-23 01:01:43,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 18:01:43] 2025-07-23 01:01:43,570 | INFO     | [monitor] control thread has ended
[2025-07-22 18:01:43] 2025-07-23 01:01:43,717 [wrapper] ==== pilot stdout END ====
[2025-07-22 18:01:43] 2025-07-23 01:01:43,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 18:01:43] 2025-07-23 01:01:43,721 [wrapper] pilotpid: 2665953
[2025-07-22 18:01:43] 2025-07-23 01:01:43,723 [wrapper] Pilot exit status: 0
[2025-07-22 18:01:43] 2025-07-23 01:01:43,731 [wrapper] pandaids: 6742556431
[2025-07-22 18:01:43] 2025-07-23 01:01:43,769 [wrapper] cleanup supervisor_pilot 2665959 2665954
[2025-07-22 18:01:43] 2025-07-23 01:01:43,772 [wrapper] Test setup, not cleaning
[2025-07-22 18:01:43] 2025-07-23 01:01:43,774 [wrapper] apfmon messages muted
[2025-07-22 18:01:43] 2025-07-23 01:01:43,776 [wrapper] ==== wrapper stdout END ====
[2025-07-22 18:01:43] 2025-07-23 01:01:43,778 [wrapper] ==== wrapper stderr END ====
[2025-07-22 18:01:43]  *** Error codes and diagnostics ***
[2025-07-22 18:01:43]     "exeErrorCode": 65,
[2025-07-22 18:01:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 18:01:43]     "pilotErrorCode": 1305,
[2025-07-22 18:01:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 18:01:43]  *** Listing of results directory ***
[2025-07-22 18:01:43] total 338252
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc    530466 Jul 22 13:12 pilot3.tar.gz
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc      5112 Jul 22 13:35 queuedata.json
[2025-07-22 18:01:43] -rwx------. 1 boinc boinc     36292 Jul 22 13:40 runpilot2-wrapper.sh
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc       100 Jul 22 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 18:01:43] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 17:57 run_atlas
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc       105 Jul 22 17:57 job.xml
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc      6597 Jul 22 17:57 init_data.xml
[2025-07-22 18:01:43] -rw-r--r--. 2 boinc boinc 342293788 Jul 22 17:57 EVNT.45697539._000129.pool.root.1
[2025-07-22 18:01:43] -rw-r--r--. 2 boinc boinc     15095 Jul 22 17:57 start_atlas.sh
[2025-07-22 18:01:43] drwxrwx--x. 2 boinc boinc      4096 Jul 22 17:57 shared
[2025-07-22 18:01:43] -rw-r--r--. 2 boinc boinc    542904 Jul 22 17:57 input.tar.gz
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc         0 Jul 22 17:57 boinc_lockfile
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc      2593 Jul 22 17:57 pandaJob.out
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc    977736 Jul 22 17:57 agis_schedconf.cvmfs.json
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc   1593031 Jul 22 17:57 agis_ddmendpoints.agis.ALL.json
[2025-07-22 18:01:43] drwx------. 4 boinc boinc      4096 Jul 22 17:57 pilot3
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc       522 Jul 22 17:58 boinc_task_state.xml
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc       951 Jul 22 17:58 memory_monitor_summary.json
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc     20644 Jul 22 17:58 log.45697541._004055.job.log.tgz.1
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc      8402 Jul 22 18:01 heartbeat.json
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc      8192 Jul 22 18:01 boinc_mmap_file
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc        22 Jul 22 18:01 wrapper_checkpoint.txt
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc        95 Jul 22 18:01 pilot_heartbeat.json
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc       823 Jul 22 18:01 pilotlog.txt
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc     78453 Jul 22 18:01 log.45697541._004055.job.log.1
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc       188 Jul 22 18:01 output.list
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc       620 Jul 22 18:01 runtime_log
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc    122880 Jul 22 18:01 result.tar.gz
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc      8485 Jul 22 18:01 runtime_log.err
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc       645 Jul 22 18:01 eGtNDmgxYy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxAKLDmRr7pOn.diag
[2025-07-22 18:01:43] -rw-r--r--. 1 boinc boinc     21792 Jul 22 18:01 stderr.txt
[2025-07-22 18:01:43] No HITS result produced
[2025-07-22 18:01:43]  *** Contents of shared directory: ***
[2025-07-22 18:01:43] total 334944
[2025-07-22 18:01:43] -rw-r--r--. 2 boinc boinc 342293788 Jul 22 17:57 ATLAS.root_0
[2025-07-22 18:01:43] -rw-r--r--. 2 boinc boinc     15095 Jul 22 17:57 start_atlas.sh
[2025-07-22 18:01:43] -rw-r--r--. 2 boinc boinc    542904 Jul 22 17:57 input.tar.gz
[2025-07-22 18:01:43] -rw-------. 1 boinc boinc    122880 Jul 22 18:01 result.tar.gz
18:01:44 (2662387): run_atlas exited; CPU time 22.286920
18:01:44 (2662387): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN