Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:11:06 (2297965): wrapper (7.7.26015): starting
20:11:06 (2297965): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 20:11:06] Arguments: --nthreads 8
[2025-07-22 20:11:06] Threads: 8
[2025-07-22 20:11:06] Checking for CVMFS
[2025-07-22 20:11:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 20:11:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 20:11:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 20:11:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 20:11:07] 2.12.6.0 870721 11884 429296 148638 3 926 28291265 32935937 38874 16776704 0 83194271 99.644 88389596 20748 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-22 20:11:07] CVMFS is ok
[2025-07-22 20:11:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 20:11:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 20:11:08] Further information can be found at the LHC@home message board.
[2025-07-22 20:11:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 20:11:08] Checking for apptainer binary...
[2025-07-22 20:11:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 20:11:08] Running /usr/bin/apptainer --version
[2025-07-22 20:11:08] apptainer version 1.4.1-1.el9
[2025-07-22 20:11:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 20:11:08] lc-10-11.aglt2.org
[2025-07-22 20:11:08] apptainer works
[2025-07-22 20:11:08] Set ATHENA_PROC_NUMBER=8
[2025-07-22 20:11:08] Set ATHENA_CORE_NUMBER=8
[2025-07-22 20:11:09] Starting ATLAS job with PandaID=6742500566
[2025-07-22 20:11:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:40:05 (2297965): BOINC client no longer exists - exiting
10:40:05 (2297965): timer handler: client dead, exiting
10:45:42 (1863865): wrapper (7.7.26015): starting
10:45:42 (1863865): wrapper: running run_atlas (--nthreads 8)
[2025-07-23 10:45:42] Arguments: --nthreads 8
[2025-07-23 10:45:42] Threads: 8
[2025-07-23 10:45:42] This job has been restarted, cleaning up previous attempt
[2025-07-23 10:45:42] Checking for CVMFS
[2025-07-23 10:45:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-23 10:45:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-23 10:45:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-23 10:45:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-23 10:45:43] 2.12.6.0 870721 12758 415208 148661 2 423 18619692 32935937 29709 16776704 0 88134940 99.639 94152464 20793 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-23 10:45:43] CVMFS is ok
[2025-07-23 10:45:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-23 10:45:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-23 10:45:43] Further information can be found at the LHC@home message board.
[2025-07-23 10:45:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-23 10:45:43] Checking for apptainer binary...
[2025-07-23 10:45:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-23 10:45:43] Running /usr/bin/apptainer --version
[2025-07-23 10:45:43] apptainer version 1.4.1-1.el9
[2025-07-23 10:45:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-23 10:45:43] lc-10-11.aglt2.org
[2025-07-23 10:45:43] apptainer works
[2025-07-23 10:45:43] Set ATHENA_PROC_NUMBER=8
[2025-07-23 10:45:43] Set ATHENA_CORE_NUMBER=8
[2025-07-23 10:45:43] Starting ATLAS job with PandaID=6742500566
[2025-07-23 10:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 14:44:32]  *** The last 200 lines of the pilot log: ***
[2025-07-23 14:44:32] 2025-07-23 18:43:57,770 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 14:44:32] 2025-07-23 18:43:57,770 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 14:44:32] 2025-07-23 18:43:57,771 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 14:44:32] 2025-07-23 18:43:57,771 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 14:44:32] 2025-07-23 18:43:57,777 | INFO     | fitting pss+swap vs Time
[2025-07-23 14:44:32] 2025-07-23 18:43:57,777 | INFO     | sum of square deviations: 3922287091.5279055
[2025-07-23 14:44:32] 2025-07-23 18:43:57,779 | INFO     | sum of deviations: 40425456574.309
[2025-07-23 14:44:32] 2025-07-23 18:43:57,779 | INFO     | mean x: 1753289103.1030042
[2025-07-23 14:44:32] 2025-07-23 18:43:57,779 | INFO     | mean y: 2182557.9871244635
[2025-07-23 14:44:32] 2025-07-23 18:43:57,779 | INFO     | -- intersect: -18068272471.374256
[2025-07-23 14:44:32] 2025-07-23 18:43:57,779 | INFO     | intersect: -18068272471.374256
[2025-07-23 14:44:32] 2025-07-23 18:43:57,780 | INFO     | chi2: 2.766393946675173
[2025-07-23 14:44:32] 2025-07-23 18:43:57,780 | INFO     | sum of square deviations: 3675164196.473668
[2025-07-23 14:44:32] 2025-07-23 18:43:57,782 | INFO     | sum of deviations: 54050721496.63162
[2025-07-23 14:44:32] 2025-07-23 18:43:57,782 | INFO     | mean x: 1753288950.6052632
[2025-07-23 14:44:32] 2025-07-23 18:43:57,782 | INFO     | mean y: 2190821.6403508773
[2025-07-23 14:44:32] 2025-07-23 18:43:57,782 | INFO     | -- intersect: -25783468731.53428
[2025-07-23 14:44:32] 2025-07-23 18:43:57,782 | INFO     | intersect: -25783468731.53428
[2025-07-23 14:44:32] 2025-07-23 18:43:57,783 | INFO     | chi2: 1.9965071291611467
[2025-07-23 14:44:32] 2025-07-23 18:43:57,783 | INFO     | current chi2=1.9965071291611467 (change=27.829977666027094 %)
[2025-07-23 14:44:32] 2025-07-23 18:43:57,783 | INFO     | sum of square deviations: 3438632242.6277905
[2025-07-23 14:44:32] 2025-07-23 18:43:57,785 | INFO     | sum of deviations: 52602369594.13904
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | mean x: 1753288798.103139
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | mean y: 2189883.515695067
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | -- intersect: -26818690878.25064
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | intersect: -26818690878.25064
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | chi2: 1.9947040855607503
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | current chi2=1.9947040855607503 (change=0.09030990042865367 %)
[2025-07-23 14:44:32] 2025-07-23 18:43:57,786 | INFO     | right removable region: 222
[2025-07-23 14:44:32] 2025-07-23 18:43:57,787 | INFO     | sum of square deviations: 3675149556.473668
[2025-07-23 14:44:32] 2025-07-23 18:43:57,789 | INFO     | sum of deviations: 824545049.5789509
[2025-07-23 14:44:32] 2025-07-23 18:43:57,789 | INFO     | mean x: 1753289255.6052632
[2025-07-23 14:44:32] 2025-07-23 18:43:57,789 | INFO     | mean y: 2206853.51754386
[2025-07-23 14:44:32] 2025-07-23 18:43:57,789 | INFO     | -- intersect: -391155635.2668338
[2025-07-23 14:44:32] 2025-07-23 18:43:57,789 | INFO     | intersect: -391155635.2668338
[2025-07-23 14:44:32] 2025-07-23 18:43:57,790 | INFO     | chi2: 1.0856470696735767
[2025-07-23 14:44:32] 2025-07-23 18:43:57,790 | INFO     | current chi2=1.0856470696735767 (change=60.755876039333586 %)
[2025-07-23 14:44:32] 2025-07-23 18:43:57,790 | INFO     | sum of square deviations: 3438616871.4170523
[2025-07-23 14:44:32] 2025-07-23 18:43:57,792 | INFO     | sum of deviations: -14163948202.66368
[2025-07-23 14:44:32] 2025-07-23 18:43:57,793 | INFO     | mean x: 1753289408.1076233
[2025-07-23 14:44:32] 2025-07-23 18:43:57,793 | INFO     | mean y: 2216491.860986547
[2025-07-23 14:44:32] 2025-07-23 18:43:57,793 | INFO     | -- intersect: 7224161037.977682
[2025-07-23 14:44:32] 2025-07-23 18:43:57,793 | INFO     | intersect: 7224161037.977682
[2025-07-23 14:44:32] 2025-07-23 18:43:57,793 | INFO     | chi2: 0.878931977402033
[2025-07-23 14:44:32] 2025-07-23 18:43:57,794 | INFO     | current chi2=0.878931977402033 (change=19.040726774466133 %)
[2025-07-23 14:44:32] 2025-07-23 18:43:57,794 | INFO     | left removable region: 20
[2025-07-23 14:44:32] 2025-07-23 18:43:57,794 | INFO     | sum of square deviations: 2555755543.881201
[2025-07-23 14:44:32] 2025-07-23 18:43:57,795 | INFO     | sum of deviations: 1353235800.3861346
[2025-07-23 14:44:32] 2025-07-23 18:43:57,796 | INFO     | mean x: 1753289377.6138613
[2025-07-23 14:44:32] 2025-07-23 18:43:57,796 | INFO     | mean y: 2224508.504950495
[2025-07-23 14:44:32] 2025-07-23 18:43:57,796 | INFO     | -- intersect: -926116998.9229162
[2025-07-23 14:44:32] 2025-07-23 18:43:57,797 | INFO     | intersect: -926116998.9229162
[2025-07-23 14:44:32] 2025-07-23 18:43:57,797 | INFO     | chi2: 0.0847841376025324
[2025-07-23 14:44:32] 2025-07-23 18:43:57,797 | INFO     | -- intersect: -926116998.9229162
[2025-07-23 14:44:32] 2025-07-23 18:43:57,800 | INFO     | current memory leak: 0.53 B/s (using 202 data points, chi2=0.08)
[2025-07-23 14:44:32] 2025-07-23 18:43:57,801 | INFO     | could have reported an average CPU frequency of 2538 MHz (11 samples)
[2025-07-23 14:44:32] 2025-07-23 18:43:57,801 | INFO     | ..............................
[2025-07-23 14:44:32] 2025-07-23 18:43:57,801 | INFO     | . Timing measurements:
[2025-07-23 14:44:32] 2025-07-23 18:43:57,801 | INFO     | . get job = 0 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,801 | INFO     | . initial setup = 3 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,802 | INFO     | . payload setup = 20 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,802 | INFO     | . stage-in = 0 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,802 | INFO     | . payload execution = 14198 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,802 | INFO     | . stage-out = 8 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,802 | INFO     | . log creation = 0 s
[2025-07-23 14:44:32] 2025-07-23 18:43:57,802 | INFO     | ..............................
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | 
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | job summary report
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | --------------------------------------------------
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | PanDA job id: 6742500566
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | task id: 45697541
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | errors: (none)
[2025-07-23 14:44:32] 2025-07-23 18:43:58,145 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | pilot state: finished 
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | transexitcode: 0
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | exeerrorcode: 0
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | exeerrordiag: 
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | exitcode: 0
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | exitmsg: OK
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | cpuconsumptiontime: 75047 s
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | nevents: 400
[2025-07-23 14:44:32] 2025-07-23 18:43:58,146 | INFO     | neventsw: 0
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | pid: 1893899
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | pgrp: 1893899
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | corecount: 8
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | event service: False
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | sizes: {0: 2397335, 1: 2397534, 11: 2397796, 12: 2397824, 14223: 2428210, 14224: 2428209, 14233: 2437447, 14248: 2437585}
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | --------------------------------------------------
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | 
[2025-07-23 14:44:32] 2025-07-23 18:43:58,147 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-07-23 14:44:32] 2025-07-23 18:43:58,255 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 14:44:32] 2025-07-23 18:43:58,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,258 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 14:44:32] 2025-07-23 18:43:58,258 | INFO     | job 6742500566 has completed (purged errors)
[2025-07-23 14:44:32] 2025-07-23 18:43:58,258 | INFO     | overall cleanup function is called
[2025-07-23 14:44:32] 2025-07-23 18:43:59,299 | INFO     | --- collectZombieJob: --- 10, [1893899]
[2025-07-23 14:44:32] 2025-07-23 18:43:59,300 | INFO     | zombie collector waiting for pid 1893899
[2025-07-23 14:44:32] 2025-07-23 18:43:59,300 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 14:44:32] 2025-07-23 18:43:59,300 | INFO     | collected zombie processes
[2025-07-23 14:44:32] 2025-07-23 18:43:59,300 | INFO     | will attempt to kill all subprocesses of pid=1893899
[2025-07-23 14:44:32] 2025-07-23 18:44:00,815 | INFO     | process IDs to be killed: [1893899] (in reverse order)
[2025-07-23 14:44:32] 2025-07-23 18:44:01,015 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 14:44:32] 2025-07-23 18:44:01,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 14:44:32] 2025-07-23 18:44:01,053 | INFO     | did not find any defunct processes belonging to 1893899
[2025-07-23 14:44:32] 2025-07-23 18:44:01,079 | INFO     | did not find any defunct processes belonging to 1893899
[2025-07-23 14:44:32] 2025-07-23 18:44:01,084 | INFO     | ready for new job
[2025-07-23 14:44:32] 2025-07-23 18:44:01,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 14:44:32] 2025-07-23 18:44:01,087 | INFO     | ***************************************
[2025-07-23 14:44:32] 2025-07-23 18:44:01,087 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 14:44:32] 2025-07-23 18:44:01,087 | INFO     | ***************************************
[2025-07-23 14:44:32] 2025-07-23 18:44:01,088 | INFO     | 
[2025-07-23 14:44:32] 2025-07-23 18:44:01,095 | INFO     | architecture information:
[2025-07-23 14:44:32] 2025-07-23 18:44:01,098 | INFO     | executing command: cat /etc/os-release
[2025-07-23 14:44:32] 2025-07-23 18:44:01,127 | INFO     | cat /etc/os-release:
[2025-07-23 14:44:32] NAME="CentOS Linux"
[2025-07-23 14:44:32] VERSION="7 (Core)"
[2025-07-23 14:44:32] ID="centos"
[2025-07-23 14:44:32] ID_LIKE="rhel fedora"
[2025-07-23 14:44:32] VERSION_ID="7"
[2025-07-23 14:44:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 14:44:32] ANSI_COLOR="0;31"
[2025-07-23 14:44:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 14:44:32] HOME_URL="https://www.centos.org/"
[2025-07-23 14:44:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 14:44:32] 
[2025-07-23 14:44:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 14:44:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 14:44:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 14:44:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 14:44:32] 
[2025-07-23 14:44:32] 2025-07-23 18:44:01,128 | INFO     | ***************************************
[2025-07-23 14:44:32] 2025-07-23 18:44:01,635 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-07-23 14:44:32] 2025-07-23 18:44:01,681 | INFO     | sufficient remaining disk space (88792367104 B)
[2025-07-23 14:44:32] 2025-07-23 18:44:01,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 14:44:32] 2025-07-23 18:44:01,682 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 14:44:32] 2025-07-23 18:44:01,682 | INFO     | update_server=False
[2025-07-23 14:44:32] 2025-07-23 18:44:01,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 14:44:32] 2025-07-23 18:44:01,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 14:44:32] 2025-07-23 18:44:01,893 | INFO     | all data control threads have been joined
[2025-07-23 14:44:32] 2025-07-23 18:44:01,912 | INFO     | all payload control threads have been joined
[2025-07-23 14:44:32] 2025-07-23 18:44:02,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 14:44:32] 2025-07-23 18:44:02,066 | INFO     | aborting loop
[2025-07-23 14:44:32] 2025-07-23 18:44:02,316 | INFO     | all job control threads have been joined
[2025-07-23 14:44:32] 2025-07-23 18:44:02,688 | INFO     | [job] retrieve thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:02,899 | INFO     | [data] control thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:02,918 | INFO     | [payload] control thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,007 | INFO     | [payload] validate_post thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 14:44:32] 2025-07-23 18:44:03,072 | INFO     | [job] job monitor thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,154 | INFO     | [job] validate thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,167 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,220 | INFO     | [data] copytool_in thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 14:44:32] 2025-07-23 18:44:03,322 | INFO     | [job] control thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,727 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,727 | INFO     | [data] copytool_out thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,728 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,851 | INFO     | [payload] failed_post thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:03,945 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:04,050 | INFO     | [job] queue monitor thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:07,306 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 14:44:32] 2025-07-23 18:44:08,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887847192384)>', '<ExcThread(monitor, started 139887219046144)>']
[2025-07-23 14:44:32] 2025-07-23 18:44:13,917 | INFO     | all workflow threads have been joined
[2025-07-23 14:44:32] 2025-07-23 18:44:13,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 14:44:32] 2025-07-23 18:44:13,917 | INFO     | traces error code: 0
[2025-07-23 14:44:32] 2025-07-23 18:44:13,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 14:44:32] 2025-07-23 18:44:31,491 | INFO     | PID=1874719 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 14:44:32] 2025-07-23 18:44:31,491 | INFO     | .. there are 47 such processes running
[2025-07-23 14:44:32] 2025-07-23 18:44:31,493 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 14:44:32] 2025-07-23 18:44:31,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 14:44:32] 2025-07-23 18:44:31,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 14:44:32] 2025-07-23 18:44:31,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 14:44:32] 2025-07-23 18:44:31,494 | INFO     | [monitor] control thread has ended
[2025-07-23 14:44:32] 2025-07-23 18:44:32,414 [wrapper] ==== pilot stdout END ====
[2025-07-23 14:44:32] 2025-07-23 18:44:32,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 14:44:32] 2025-07-23 18:44:32,426 [wrapper] pilotpid: 1874719
[2025-07-23 14:44:32] 2025-07-23 18:44:32,430 [wrapper] Pilot exit status: 0
[2025-07-23 14:44:32] 2025-07-23 18:44:32,467 [wrapper] pandaids: 6742500566 6742500566
[2025-07-23 14:44:32] 2025-07-23 18:44:32,599 [wrapper] cleanup supervisor_pilot 3211787 1874720
[2025-07-23 14:44:32] 2025-07-23 18:44:32,604 [wrapper] Test setup, not cleaning
[2025-07-23 14:44:32] 2025-07-23 18:44:32,608 [wrapper] apfmon messages muted
[2025-07-23 14:44:32] 2025-07-23 18:44:32,641 [wrapper] ==== wrapper stdout END ====
[2025-07-23 14:44:32] 2025-07-23 18:44:32,648 [wrapper] ==== wrapper stderr END ====
[2025-07-23 14:44:32]  *** Error codes and diagnostics ***
[2025-07-23 14:44:32]     "exeErrorCode": 0,
[2025-07-23 14:44:32]     "exeErrorDiag": "",
[2025-07-23 14:44:32]     "pilotErrorCode": 0,
[2025-07-23 14:44:32]     "pilotErrorDiag": "",
[2025-07-23 14:44:32]  *** Listing of results directory ***
[2025-07-23 14:44:32] total 973592
[2025-07-23 14:44:32] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 12:21 pilot3.tar.gz
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 12:27 queuedata.json
[2025-07-23 14:44:32] -rwx------. 1 boincer umatlas     36292 Jul 22 12:29 runpilot2-wrapper.sh
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas       100 Jul 22 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 14:44:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 20:11 run_atlas
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas       105 Jul 22 20:11 job.xml
[2025-07-23 14:44:32] -rw-r--r--. 3 boincer umatlas 343323779 Jul 22 20:11 EVNT.45697539._000206.pool.root.1
[2025-07-23 14:44:32] -rw-r--r--. 3 boincer umatlas 343323779 Jul 22 20:11 ATLAS.root_0
[2025-07-23 14:44:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 20:11 start_atlas.sh
[2025-07-23 14:44:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 20:11 shared
[2025-07-23 14:44:32] -rw-r--r--. 2 boincer umatlas    542900 Jul 22 20:11 input.tar.gz
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas         0 Jul 22 20:11 boinc_lockfile
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas      2593 Jul 23 10:45 pandaJob.out
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas    978487 Jul 23 10:46 agis_schedconf.cvmfs.json
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas      6867 Jul 23 14:39 init_data.xml
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas 303408788 Jul 23 14:41 HITS.45697541._001649.pool.root.1
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas       533 Jul 23 14:42 boinc_task_state.xml
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas      1045 Jul 23 14:43 memory_monitor_summary.json
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas   1593041 Jul 23 14:43 agis_ddmendpoints.agis.ALL.json
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas    386395 Jul 23 14:43 log.45697541._001649.job.log.tgz.1
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas      7827 Jul 23 14:43 heartbeat.json
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 23 14:44 boinc_mmap_file
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas        29 Jul 23 14:44 wrapper_checkpoint.txt
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas        96 Jul 23 14:44 pilot_heartbeat.json
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas       823 Jul 23 14:44 pilotlog.txt
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas   1124520 Jul 23 14:44 log.45697541._001649.job.log.1
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas       357 Jul 23 14:44 output.list
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas       620 Jul 23 14:44 runtime_log
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas   1525760 Jul 23 14:44 result.tar.gz
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas       781 Jul 23 14:44 x1cMDmH3Uy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTmJLDmjqOzPo.diag
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas      8746 Jul 23 14:44 runtime_log.err
[2025-07-23 14:44:32] -rw-r--r--. 1 boincer umatlas     23278 Jul 23 14:44 stderr.txt
[2025-07-23 14:44:32] HITS file was successfully produced:
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas 303408788 Jul 23 14:41 shared/HITS.pool.root.1
[2025-07-23 14:44:32]  *** Contents of shared directory: ***
[2025-07-23 14:44:32] total 633628
[2025-07-23 14:44:32] -rw-r--r--. 3 boincer umatlas 343323779 Jul 22 20:11 ATLAS.root_0
[2025-07-23 14:44:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 20:11 start_atlas.sh
[2025-07-23 14:44:32] -rw-r--r--. 2 boincer umatlas    542900 Jul 22 20:11 input.tar.gz
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas 303408788 Jul 23 14:41 HITS.pool.root.1
[2025-07-23 14:44:32] -rw-------. 1 boincer umatlas   1525760 Jul 23 14:44 result.tar.gz
14:44:34 (1863865): run_atlas exited; CPU time 75750.229864
14:44:34 (1863865): called boinc_finish(0)

</stderr_txt>
]]>

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