Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:09:04 (3415093): wrapper (7.7.26015): starting
16:09:04 (3415093): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 16:09:04] Arguments: --nthreads 12
[2025-07-22 16:09:04] Threads: 12
[2025-07-22 16:09:04] Checking for CVMFS
[2025-07-22 16:09:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 16:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 16:09:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 16:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 16:09:06] 2.11.5.0 7126 30582 216360 148637 2 549 38054319 45568000 12698 130560 0 215383612 99.717 177436950 22829 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-22 16:09:06] CVMFS is ok
[2025-07-22 16:09:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 16:09:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 16:09:06] Further information can be found at the LHC@home message board.
[2025-07-22 16:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 16:09:06] Checking for apptainer binary...
[2025-07-22 16:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 16:09:06] Running /usr/bin/apptainer --version
[2025-07-22 16:09:06] apptainer version 1.4.1-1.el9
[2025-07-22 16:09:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 16:09:07] wns0039.triumf.lcg
[2025-07-22 16:09:07] apptainer works
[2025-07-22 16:09:07] Set ATHENA_PROC_NUMBER=12
[2025-07-22 16:09:07] Set ATHENA_CORE_NUMBER=12
[2025-07-22 16:09:07] Starting ATLAS job with PandaID=6742555332
[2025-07-22 16:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 16:13:14]  *** The last 200 lines of the pilot log: ***
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | WARNING  | wrong length of table data, x=[1753225813.0], y=[1288.0] (must be same and length>=4)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | could have reported an average CPU frequency of 2616 MHz (4 samples)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | ..............................
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . Timing measurements:
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . get job = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . initial setup = 3 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . payload setup = 14 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . stage-in = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . payload execution = 30 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . stage-out = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . log creation = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | ..............................
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742555332/pilotlog.txt
[2025-07-22 16:13:14] 2025-07-22 23:12:40,991 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 16:13:14] - Log from pilotlog.txt -
[2025-07-22 16:13:14] 2025-07-22 23:12:40,978 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742555332/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | INFO     | extracted standard info from prmon json
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | WARNING  | wrong length of table data, x=[1753225813.0], y=[1288.0] (must be same and length>=4)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | could have reported an average CPU frequency of 2616 MHz (4 samples)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | ..............................
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . Timing measurements:
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . get job = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . initial setup = 3 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . payload setup = 14 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . stage-in = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . payload execution = 30 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . stage-out = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . log creation = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | ..............................
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742555332/pilotlog.txt
[2025-07-22 16:13:14] 2025-07-22 23:12:40,991 | WARNING  | 
[2025-07-22 16:13:14] [begin log extracts]
[2025-07-22 16:13:14] - Log from pilotlog.txt -
[2025-07-22 16:13:14] 2025-07-22 23:12:40,978 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742555332/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | INFO     | extracted standard info from prmon json
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 16:13:14] 2025-07-22 23:12:40,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | WARNING  | wrong length of table data, x=[1753225813.0], y=[1288.0] (must be same and length>=4)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | could have reported an average CPU frequency of 2616 MHz (4 samples)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | ..............................
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . Timing measurements:
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . get job = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . initial setup = 3 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . payload setup = 14 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . stage-in = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . payload execution = 30 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . stage-out = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,980 | INFO     | . log creation = 0 s
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | ..............................
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 16:13:14] 2025-07-22 23:12:40,981 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742555332/pilotlog.txt
[2025-07-22 16:13:14] [end log extracts]
[2025-07-22 16:13:14] 2025-07-22 23:12:40,992 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 16:13:14] 2025-07-22 23:12:40,992 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 16:13:14] 2025-07-22 23:12:41,049 | INFO     | 
[2025-07-22 16:13:14] 2025-07-22 23:12:41,049 | INFO     | job summary report
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | --------------------------------------------------
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | PanDA job id: 6742555332
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | task id: 45697541
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 16:10:21,580 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | pilot state: failed 
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | transexitcode: 65
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | exeerrorcode: 65
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | exitcode: 65
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | cpuconsumptiontime: 15 s
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | nevents: 0
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | neventsw: 0
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | pid: 3424971
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | pgrp: 3424971
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | corecount: 12
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | event service: False
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | sizes: {0: 2397281, 1: 2397480, 10: 2397742, 11: 2397770, 48: 2425241, 51: 2425241, 176: 2425595}
[2025-07-22 16:13:14] 2025-07-22 23:12:41,050 | INFO     | --------------------------------------------------
[2025-07-22 16:13:14] 2025-07-22 23:12:41,051 | INFO     | 
[2025-07-22 16:13:14] 2025-07-22 23:12:41,051 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | job 6742555332 has completed (purged errors)
[2025-07-22 16:13:14] 2025-07-22 23:12:41,065 | INFO     | overall cleanup function is called
[2025-07-22 16:13:14] 2025-07-22 23:12:42,075 | INFO     | --- collectZombieJob: --- 10, [3424971]
[2025-07-22 16:13:14] 2025-07-22 23:12:42,075 | INFO     | zombie collector waiting for pid 3424971
[2025-07-22 16:13:14] 2025-07-22 23:12:42,075 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 16:13:14] 2025-07-22 23:12:42,075 | INFO     | collected zombie processes
[2025-07-22 16:13:14] 2025-07-22 23:12:42,075 | INFO     | will attempt to kill all subprocesses of pid=3424971
[2025-07-22 16:13:14] 2025-07-22 23:12:42,689 | INFO     | process IDs to be killed: [3424971] (in reverse order)
[2025-07-22 16:13:14] 2025-07-22 23:12:42,747 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 16:13:14] 2025-07-22 23:12:42,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 16:13:14] 2025-07-22 23:12:42,754 | INFO     | did not find any defunct processes belonging to 3424971
[2025-07-22 16:13:14] 2025-07-22 23:12:42,760 | INFO     | did not find any defunct processes belonging to 3424971
[2025-07-22 16:13:14] 2025-07-22 23:12:42,760 | INFO     | ready for new job
[2025-07-22 16:13:14] 2025-07-22 23:12:42,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 16:13:14] 2025-07-22 23:12:42,762 | INFO     | ***************************************
[2025-07-22 16:13:14] 2025-07-22 23:12:42,762 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 16:13:14] 2025-07-22 23:12:42,762 | INFO     | ***************************************
[2025-07-22 16:13:14] 2025-07-22 23:12:42,762 | INFO     | 
[2025-07-22 16:13:14] 2025-07-22 23:12:42,763 | INFO     | architecture information:
[2025-07-22 16:13:14] 2025-07-22 23:12:42,764 | INFO     | executing command: cat /etc/os-release
[2025-07-22 16:13:14] 2025-07-22 23:12:42,774 | INFO     | cat /etc/os-release:
[2025-07-22 16:13:14] NAME="CentOS Linux"
[2025-07-22 16:13:14] VERSION="7 (Core)"
[2025-07-22 16:13:14] ID="centos"
[2025-07-22 16:13:14] ID_LIKE="rhel fedora"
[2025-07-22 16:13:14] VERSION_ID="7"
[2025-07-22 16:13:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 16:13:14] ANSI_COLOR="0;31"
[2025-07-22 16:13:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 16:13:14] HOME_URL="https://www.centos.org/"
[2025-07-22 16:13:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 16:13:14] 
[2025-07-22 16:13:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 16:13:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 16:13:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 16:13:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 16:13:14] 
[2025-07-22 16:13:14] 2025-07-22 23:12:42,774 | INFO     | ***************************************
[2025-07-22 16:13:14] 2025-07-22 23:12:43,278 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 16:13:14] 2025-07-22 23:12:43,321 | INFO     | sufficient remaining disk space (1998589001728 B)
[2025-07-22 16:13:14] 2025-07-22 23:12:43,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 16:13:14] 2025-07-22 23:12:43,322 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 16:13:14] 2025-07-22 23:12:43,322 | INFO     | update_server=False
[2025-07-22 16:13:14] 2025-07-22 23:12:43,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 16:13:14] 2025-07-22 23:12:43,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 16:13:14] 2025-07-22 23:12:43,377 | INFO     | aborting loop
[2025-07-22 16:13:14] 2025-07-22 23:12:43,517 | INFO     | all payload control threads have been joined
[2025-07-22 16:13:14] 2025-07-22 23:12:43,616 | INFO     | all job control threads have been joined
[2025-07-22 16:13:14] 2025-07-22 23:12:44,117 | INFO     | all data control threads have been joined
[2025-07-22 16:13:14] 2025-07-22 23:12:44,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 16:13:14] 2025-07-22 23:12:44,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 16:13:14] 2025-07-22 23:12:44,328 | INFO     | [job] retrieve thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:44,383 | INFO     | [job] job monitor thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:44,523 | INFO     | [payload] control thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:44,542 | INFO     | [payload] validate_post thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:44,564 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:44,621 | INFO     | [job] control thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:44,752 | INFO     | [job] validate thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:45,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:45,026 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:45,035 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:45,123 | INFO     | [data] control thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:45,215 | INFO     | [data] copytool_in thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:45,444 | INFO     | [payload] failed_post thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:46,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 16:13:14] 2025-07-22 23:12:46,260 | INFO     | [data] copytool_out thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:47,091 | INFO     | [job] queue monitor thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:48,257 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 16:13:14] 2025-07-22 23:12:50,224 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140265039918912)>', '<ExcThread(monitor, started 140264354076416)>']
[2025-07-22 16:13:14] 2025-07-22 23:12:55,258 | INFO     | all workflow threads have been joined
[2025-07-22 16:13:14] 2025-07-22 23:12:55,259 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 16:13:14] 2025-07-22 23:12:55,259 | INFO     | traces error code: 0
[2025-07-22 16:13:14] 2025-07-22 23:12:55,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 16:13:14] 2025-07-22 23:13:13,439 | INFO     | PID=3418662 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 16:13:14] 2025-07-22 23:13:13,440 | INFO     | .. there are 20 such processes running
[2025-07-22 16:13:14] 2025-07-22 23:13:13,440 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 16:13:14] 2025-07-22 23:13:13,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 16:13:14] 2025-07-22 23:13:13,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 16:13:14] 2025-07-22 23:13:13,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 16:13:14] 2025-07-22 23:13:13,444 | INFO     | [monitor] control thread has ended
[2025-07-22 16:13:14] 2025-07-22 23:13:13,651 [wrapper] ==== pilot stdout END ====
[2025-07-22 16:13:14] 2025-07-22 23:13:13,653 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 16:13:14] 2025-07-22 23:13:13,655 [wrapper] pilotpid: 3418662
[2025-07-22 16:13:14] 2025-07-22 23:13:13,657 [wrapper] Pilot exit status: 0
[2025-07-22 16:13:14] 2025-07-22 23:13:13,667 [wrapper] pandaids: 6742555332
[2025-07-22 16:13:14] 2025-07-22 23:13:13,706 [wrapper] cleanup supervisor_pilot 3418668 3418663
[2025-07-22 16:13:14] 2025-07-22 23:13:13,708 [wrapper] Test setup, not cleaning
[2025-07-22 16:13:14] 2025-07-22 23:13:13,710 [wrapper] apfmon messages muted
[2025-07-22 16:13:14] 2025-07-22 23:13:13,712 [wrapper] ==== wrapper stdout END ====
[2025-07-22 16:13:14] 2025-07-22 23:13:13,733 [wrapper] ==== wrapper stderr END ====
[2025-07-22 16:13:14]  *** Error codes and diagnostics ***
[2025-07-22 16:13:14]     "exeErrorCode": 65,
[2025-07-22 16:13:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 16:13:14]     "pilotErrorCode": 1305,
[2025-07-22 16:13:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 16:13:14]  *** Listing of results directory ***
[2025-07-22 16:13:14] total 339464
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc    530466 Jul 22 12:19 pilot3.tar.gz
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc      5112 Jul 22 12:26 queuedata.json
[2025-07-22 16:13:14] -rwx------. 1 boinc boinc     36292 Jul 22 12:27 runpilot2-wrapper.sh
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc       100 Jul 22 16:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 16:13:14] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 16:09 run_atlas
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc       105 Jul 22 16:09 job.xml
[2025-07-22 16:13:14] -rw-r--r--. 2 boinc boinc 343551346 Jul 22 16:09 EVNT.45697539._000100.pool.root.1
[2025-07-22 16:13:14] -rw-r--r--. 2 boinc boinc     15095 Jul 22 16:09 start_atlas.sh
[2025-07-22 16:13:14] drwxrwx--x. 2 boinc boinc      4096 Jul 22 16:09 shared
[2025-07-22 16:13:14] -rw-r--r--. 2 boinc boinc    542909 Jul 22 16:09 input.tar.gz
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc      6597 Jul 22 16:09 init_data.xml
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc         0 Jul 22 16:09 boinc_lockfile
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc      2592 Jul 22 16:09 pandaJob.out
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc    977736 Jul 22 16:09 agis_schedconf.cvmfs.json
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc   1593031 Jul 22 16:09 agis_ddmendpoints.agis.ALL.json
[2025-07-22 16:13:14] drwx------. 4 boinc boinc      4096 Jul 22 16:09 pilot3
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc       961 Jul 22 16:10 memory_monitor_summary.json
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc     20333 Jul 22 16:10 log.45697541._003320.job.log.tgz.1
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc        95 Jul 22 16:12 pilot_heartbeat.json
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc      8405 Jul 22 16:12 heartbeat.json
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc       523 Jul 22 16:12 boinc_task_state.xml
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc      8192 Jul 22 16:13 boinc_mmap_file
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc        22 Jul 22 16:13 wrapper_checkpoint.txt
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc       823 Jul 22 16:13 pilotlog.txt
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc     77080 Jul 22 16:13 log.45697541._003320.job.log.1
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc       188 Jul 22 16:13 output.list
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc       620 Jul 22 16:13 runtime_log
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc    112640 Jul 22 16:13 result.tar.gz
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc       644 Jul 22 16:13 uqZMDmApXy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWMvKDmoCXa4m.diag
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc      8485 Jul 22 16:13 runtime_log.err
[2025-07-22 16:13:14] -rw-r--r--. 1 boinc boinc     21791 Jul 22 16:13 stderr.txt
[2025-07-22 16:13:14] No HITS result produced
[2025-07-22 16:13:14]  *** Contents of shared directory: ***
[2025-07-22 16:13:14] total 336164
[2025-07-22 16:13:14] -rw-r--r--. 2 boinc boinc 343551346 Jul 22 16:09 ATLAS.root_0
[2025-07-22 16:13:14] -rw-r--r--. 2 boinc boinc     15095 Jul 22 16:09 start_atlas.sh
[2025-07-22 16:13:14] -rw-r--r--. 2 boinc boinc    542909 Jul 22 16:09 input.tar.gz
[2025-07-22 16:13:14] -rw-------. 1 boinc boinc    112640 Jul 22 16:13 result.tar.gz
16:13:15 (3415093): run_atlas exited; CPU time 22.168187
16:13:15 (3415093): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN